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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP176
Library VH
(Link to library)
Clone ID VHP176
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16579-1
Original site URL
Representative seq. ID VHP176P
(Link to Original site)
Representative DNA sequence 
>VHP176 (VHP176Q) /CSM/VH/VHP1-D/VHP176Q.Seq.d/
ATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATG
TGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGG
TGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGT
GTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGG
TCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGT
AACGTAAAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCANATCTTGATGGTA
GTANCAAATATTCAAAANAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAA
TGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTT
ACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAA
GGGAANCGGGTTAAAATTCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATC
CGGGACATXXXXXXXXXXAGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCT
TGTGGCAGCCAAGCGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTT
ATCATTGTGAAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGA
GCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCG
TAATAGTAGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTT
TATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAA
GTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAAC
ATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACA
CTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCC
GCTCAACTCTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTA
GCGTTCAGTTACGAGGGAGTTGAGGCTTTTCCATA
sequence update 2002.10.25
Translated Amino Acid sequence 
vq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir*gvc
nnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rkslnvnssgvvfsaxldgs
xkyskxftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvtl*aer
exg*NSCTIEWDIRVTDRNPGH---

---PRGVRKVTTGITGLWQPSAHSDAAF*sfdvgssyhceaeftkcwivhpltrnvswv*
tvvrqvsftlllsivcviva*fstrgtvmpdhwsvglfdkivtcryhpldng*tplsqnp
f*krkpnalececcr*h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrstl
rl*ttik*trccklpssvqlrgs*gfsi
Translated Amino Acid sequence (All Frames) 
Frame A:
mcnek*ellvghfw*aelamwvepnigirrltftnryhkrc*fiktagrwpwksvsakec
vtthlpnglalkmddassgwsmpnr*kk**yf*rvgrregnvka*m*irvelslvxilmv
vxniqxnll*rpkwgrvp*qwnslmgesilrfgltlsnkvtrsldrk*rwl*h**lyrpk
gxrvkipapsngilg*pivird---

---slevseklpqg*lacgsqaliatllfdpsmsalliivkqnsqsvglfth*qgt*agf
rps*drlvlpyccqlfa***hdlvreelscritgl*vyltk**paatirwimaerl*vri
hsrnanqml*svnvvgnirllvgdhfql*ti*liavtlqfpsgycggwlnsnlyprsaql
fdcrrlsnelgavsfrvafsyegveafp

Frame B:
camknrss*waifgkqnwrcglnqilg*dv*hslidttkgvsslrqqdgghgsryplrsv
*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefewscl*cxs*w*
xqifkxiyfegrsgegfhnngihlwvsrs*glg*lslirllghwieseggfntsdfigrk
gxglkflhhrmgy*gnrs*sgt---

---a*rcqksyhrdnwlvaakrs*rrcflilrcrlflsl*srihkvldcsptnkerelgl
drretg*fyptvvnclrnssmi*yernchagslvcrfi*qnsdlplpsvg*wlnaskses
iletqtkcfrv*ml*vtlgcwwgttfnfkpyd*sllhcsflpvivvgg*iliyilvplns
sivddyqmn*vl*ase*rsvtrelrlfh

Frame C:
vq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir*gvc
nnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rkslnvnssgvvfsaxldgs
xkyskxftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvtl*aer
exg*NSCTIEWDIRVTDRNPGH---

---PRGVRKVTTGITGLWQPSAHSDAAF*sfdvgssyhceaeftkcwivhpltrnvswv*
tvvrqvsftlllsivcviva*fstrgtvmpdhwsvglfdkivtcryhpldng*tplsqnp
f*krkpnalececcr*h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrstl
rl*ttik*trccklpssvqlrgs*gfsi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP176 (VHP176Q) /CSM/VH/VHP1-D/VHP176Q.Seq.d/                       2365   0.0
CHL604 (CHL604Q) /CSM/CH/CHL6-A/CHL604Q.Seq.d/                       1207   0.0
VHC874 (VHC874Q) /CSM/VH/VHC8-D/VHC874Q.Seq.d/                       1205   0.0
VHQ477 (VHQ477Q) /CSM/VH/VHQ4-D/VHQ477Q.Seq.d/                       1205   0.0
VHK875 (VHK875Q) /CSM/VH/VHK8-D/VHK875Q.Seq.d/                       1205   0.0
VHI207 (VHI207Q) /CSM/VH/VHI2-A/VHI207Q.Seq.d/                       1205   0.0
VHD592 (VHD592Q) /CSM/VH/VHD5-D/VHD592Q.Seq.d/                       1205   0.0
VHD219 (VHD219Q) /CSM/VH/VHD2-A/VHD219Q.Seq.d/                       1205   0.0
VHC874 (VHC874Q) /CSM/VH/VHC8-D/VHC874Q.Seq.d/                       1205   0.0
VHA465 (VHA465Q) /CSM/VH/VHA4-C/VHA465Q.Seq.d/                       1205   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446153) Dictyostelium discoideum cDNA clone:ddv61g19, 3' ...  1223   0.0    1
(BJ348300) Dictyostelium discoideum cDNA clone:dda32e23, 3' ...  1197   0.0    1
(BJ442973) Dictyostelium discoideum cDNA clone:ddv51c15, 3' ...  1189   0.0    1
(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1187   0.0    2
(AU034938) Dictyostelium discoideum slug cDNA, clone SLE369.     1187   0.0    2
(BJ446798) Dictyostelium discoideum cDNA clone:ddv63j20, 3' ...  1187   0.0    2
(BJ445824) Dictyostelium discoideum cDNA clone:ddv60c19, 3' ...  1187   0.0    1
(BJ443646) Dictyostelium discoideum cDNA clone:ddv53k13, 3' ...  1187   0.0    1
(BJ443401) Dictyostelium discoideum cDNA clone:ddv52f20, 3' ...  1187   0.0    2
(BJ443278) Dictyostelium discoideum cDNA clone:ddv52o12, 3' ...  1187   0.0    1
dna update 2008.12.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP...   132   3e-29
CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    60   9e-14
AY436773_1(AY436773|pid:none) Pyrus communis putative senescence...    79   3e-13
CP001575_406(CP001575|pid:none) Micromonas sp. RCC299 chromosome...    77   1e-12
AK230153_1(AK230153|pid:none) Arabidopsis thaliana mRNA for hypo...    72   5e-11
EU244380_1(EU244380|pid:none) Haliotis diversicolor clone HDr4CJ...    68   6e-10
BC114377_1(BC114377|pid:none) Homo sapiens cDNA clone MGC:134704...    65   5e-09
EF192058_1(EF192058|pid:none) Trichosanthes dioica clone TDM04 p...    55   4e-06
U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo...    39   0.001
AL844507_287(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    45   0.004
protein update 2009. 7.20
PSORT 

 psg: 0.75  gvh: 0.45  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VHP176 is cyt
5' end seq. ID VHP176F
5' end seq. 
>VHP176F.Seq
ATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATG
TGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGG
TGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGT
GTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGG
TCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGT
AACGTAAAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCANATCTTGATGGTA
GTANCAAATATTCAAAANAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAA
TGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTT
ACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAA
GGGAANCGGGTTAAAATTCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATC
CGGGACATNNNNNNNNNN
Length of 5' end seq. 618
3' end seq. ID VHP176Z
3' end seq. 
>VHP176Z.Seq
NNNNNNNNNNAGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAG
CCAAGCGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGT
GAAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTT
TAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTA
GCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGAC
AAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAAT
CCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTT
GTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTT
TCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACT
CTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAG
TTACGAGGGAGTTGAGGCTTTTCCATA
Length of 3' end seq. 627
Connected seq. ID VHP176P
Connected seq. 
>VHP176P.Seq
ATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATG
TGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGG
TGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGT
GTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGG
TCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGT
AACGTAAAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCANATCTTGATGGTA
GTANCAAATATTCAAAANAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAA
TGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTT
ACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAA
GGGAANCGGGTTAAAATTCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATC
CGGGACAT----------AGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCT
TGTGGCAGCCAAGCGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTT
ATCATTGTGAAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGA
GCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCG
TAATAGTAGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTT
TATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAA
GTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAAC
ATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACA
CTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCC
GCTCAACTCTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTA
GCGTTCAGTTACGAGGGAGTTGAGGCTTTTCCATA
Length of connected seq. 1225
Full length Seq ID -
Full length Seq. -
Length of full length seq. -