VHP154
Library VH
(Link to library)
Clone ID VHP154
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12088-1|Contig-U13789-1
Original site URL
Representative seq. ID VHP154P
(Link to Original site)
Representative DNA sequence
>VHP154 (VHP154Q) /CSM/VH/VHP1-C/VHP154Q.Seq.d/
TACAACTGCAGCTAATTTATTCAAGAAAACCGATATATTACTAAAGGTTAGAGGTCCACA
ATTTAATACAAACTTGGGTAAACATGAAGTTGAAATGATGAAAGAAGGTGCTACAGTAAT
TAGCTTTTTATCACCAGCACAAAATGCAGAAACTTTAAAGTTACTATCACAAAAGAAAGC
TAATGCCATTGCAGTTGATTGTATACCAAGAATTAGTAGAGCACAGGTTTTTGATGGTTT
ATCATCAATGGCAAATATTGCAGGTTATAAAGCAGTGATGGAGGCATCCAACTATTTTGG
TAGATTCTTTGGTGGAGCCATTACAGCCGCTGGTAGAGTTCAGCCTGCTAAAGTATTGGT
TATTGGTGCTGGTGTTGCTGGTTTATCTGCTATTGGTACCGCTAAAAATATTGGTGCTAT
CGTTAGAGCATTCGATACTAGATCTGTTACCAAAGAACAAGTTGAATCATTGGGTGGTGA
ATTTTTAGAAGTGAAAATCAAAGAGAGTGGAGAAGGTTCAGGTGGCTATGCAAAACACAT
GTCAAAGGAATACATTGAGGCTGAAATGGCATTGTTTGAACGTCAATGTAAAGAAGTGGA
TATCGTAXXXXXXXXXXTCTTTCATTCATTCAAGGTCATTTATTAACCGCTGCAATTAAT
GGTCCAGATATGCCAGTTGTTGTAACTGTATTAAATAGTTATTCAGGTTGGGCATTGGTT
GCTGAAGGTTTCATGTTAGATTCATCCCTATTGAATATTGTTGGTGCAATTGTTGGTTCA
AGTGGTGCAATCTTATCATATATCATGTGTAAAGCTATGAATAGAAATCTTATGAGTGTT
ATTTTAGGTGGTGTTGGTACATCAAGTATGGGAAAAGGTGAAGCAATGAAAATCACAGGT
ACTCACACTGAAATCAATGTTGATCAAGCAAGTGAAATGATTACCAACTCTAAAAATATT
CTCATTGTACCAGGTTATGGTATGGTTGTTAGTAAAAGTCAATATCCAGTTGCAGAGATG
GTTAAAACTTTAATCCAGAAATGAAAGATATAGATTTAGCGATCGTAATTGGTGCAAATG
ATACCGTCAATAGTGCATCAGTTGAAGATCCAAATTCAATTATCGCTGGTATGCCAGTTA
TTGAAGTTTGGAAAGCAAAACATTGTATCGTTATGAAACGTTCATTAACAAATGCTGGTT
ATGCCGATATTCAAAATCCAGTATTTTATAAACCAAATACTTCAATGTTATTAGGTGATG
CTACAAACACTTGTAAAGAATGGCAAATAAAATGNATAAACATTATAATTCTNCTCATAA
AA
sequence update 2002.10.25
Translated Amino Acid sequence
TTAANLFKKTDILLKVRGPQFNTNLGKHEVEMMKEGATVISFLSPAQNAETLKLLSQKKA
NAIAVDCIPRISRAQVFDGLSSMANIAGYKAVMEASNYFGRFFGGAITAAGRVQPAKVLV
IGAGVAGLSAIGTAKNIGAIVRAFDTRSVTKEQVESLGGEFLEVKIKESGEGSGGYAKHM
SKEYIEAEMALFERQCKEVDIV---

---LSFIQGHLLTAAINGPDMPVVVTVLNSYSGWALVAEGFMLDSSLLNIVGAIVGSSGA
ILSYIMCKAMNRNLMSVILGGVGTSSMGKGEAMKITGTHTEINVDQASEMITNSKNILIV
PGYGMVVSKSQYPVAEMVKTLIQK*ki*i*rs*lvqmipsivhqlkiqiqlslvcqllkf
gkqnivsl*nvh*qmlvmpifkiqyfinqilqcy*vmlqtlvkngk*nx*tl*fxs*


Translated Amino Acid sequence (All Frames)
Frame A:
yncs*fiqenryitkg*rsti*yklg*t*s*nderrcysn*lfitstkcrnfkvtitkes
*chcs*lytkn**stgf*wfiingkycrl*ssdggiqlfw*ilwwshysrw*ssac*sig
ywcwccwficywyr*kywcyr*siry*icyqrts*iigw*ifrsenqrewrrfrwlckth
vkgih*g*ngiv*tsm*rsgyr---

---sfihsrsfinrcn*wsryasccncik*lfrlgigc*rfhvrfipieycwcncwfkwc
nliiyhv*sye*ksyecyfrwcwyikygkr*snenhrysh*nqc*ssk*ndyql*kyshc
trlwygc**ksisscrdg*nfnpemkdidlaivigandtvnsasvedpnsiiagmpviev
wkakhcivmkrsltnagyadiqnpvfykpntsmllgdatntckewqikxiniiillik

Frame B:
TTAANLFKKTDILLKVRGPQFNTNLGKHEVEMMKEGATVISFLSPAQNAETLKLLSQKKA
NAIAVDCIPRISRAQVFDGLSSMANIAGYKAVMEASNYFGRFFGGAITAAGRVQPAKVLV
IGAGVAGLSAIGTAKNIGAIVRAFDTRSVTKEQVESLGGEFLEVKIKESGEGSGGYAKHM
SKEYIEAEMALFERQCKEVDIV---

---LSFIQGHLLTAAINGPDMPVVVTVLNSYSGWALVAEGFMLDSSLLNIVGAIVGSSGA
ILSYIMCKAMNRNLMSVILGGVGTSSMGKGEAMKITGTHTEINVDQASEMITNSKNILIV
PGYGMVVSKSQYPVAEMVKTLIQK*ki*i*rs*lvqmipsivhqlkiqiqlslvcqllkf
gkqnivsl*nvh*qmlvmpifkiqyfinqilqcy*vmlqtlvkngk*nx*tl*fxs*

Frame C:
qlqliysrkpiyy*rlevhnliqtwvnmklk**kkvlq*lafyhqhkmqkl*syyhkrkl
mplqlivyqelvehrflmvyhqwqilqvikq*wrhptilvdslveplqplvefsllkywl
lvlvllvylllvplkilvlslehsildllpknklnhwvvnf*k*kskrvekvqvamqntc
qrntlrlkwhclnvnvkkwis---

---fhsfkviy*plqlmvqicqll*ly*iviqvghwllkvsc*ihpy*illvqllvqvvq
syhiscvkl*ieil*vlf*vvlvhqvwekvkq*ksqvltlksmlikqvk*lptlkifsly
qvmvwllvkvniqlqrwlkl*srneryrfsdrnwck*yrq*cis*rskfnyrwyasy*sl
esktlyryetfinkcwlcryskssil*tkyfnvir*cykhl*rmankmxkhynsxhk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP154 (VHP154Q) /CSM/VH/VHP1-C/VHP154Q.Seq.d/ 2549 0.0
VHB345 (VHB345Q) /CSM/VH/VHB3-B/VHB345Q.Seq.d/ 1203 0.0
VHD637 (VHD637Q) /CSM/VH/VHD6-B/VHD637Q.Seq.d/ 1013 0.0
VHM348 (VHM348Q) /CSM/VH/VHM3-B/VHM348Q.Seq.d/ 999 0.0
VHH633 (VHH633Q) /CSM/VH/VHH6-B/VHH633Q.Seq.d/ 997 0.0
VHE583 (VHE583Q) /CSM/VH/VHE5-D/VHE583Q.Seq.d/ 971 0.0
VHC381 (VHC381Q) /CSM/VH/VHC3-D/VHC381Q.Seq.d/ 888 0.0
SHG631 (SHG631Q) /CSM/SH/SHG6-B/SHG631Q.Seq.d/ 842 0.0
VHQ158 (VHQ158Q) /CSM/VH/VHQ1-C/VHQ158Q.Seq.d/ 728 0.0
VHK881 (VHK881Q) /CSM/VH/VHK8-D/VHK881Q.Seq.d/ 664 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ446092) Dictyostelium discoideum cDNA clone:ddv61k13, 3' ... 1386 0.0 1
(BJ427198) Dictyostelium discoideum cDNA clone:ddv61k13, 5' ... 1203 0.0 1
(BJ418604) Dictyostelium discoideum cDNA clone:ddv33j11, 5' ... 1203 0.0 1
(BJ446683) Dictyostelium discoideum cDNA clone:ddv63c15, 3' ... 728 0.0 2
(BJ439744) Dictyostelium discoideum cDNA clone:ddv41o11, 3' ... 620 0.0 2
(BJ420138) Dictyostelium discoideum cDNA clone:ddv38i10, 5' ... 1013 0.0 1
(BJ425359) Dictyostelium discoideum cDNA clone:ddv55p11, 5' ... 999 0.0 1
(BJ422532) Dictyostelium discoideum cDNA clone:ddv46a10, 5' ... 997 0.0 1
(BJ420899) Dictyostelium discoideum cDNA clone:ddv40e21, 5' ... 971 0.0 1
(BJ444165) Dictyostelium discoideum cDNA clone:ddv55p11, 3' ... 515 0.0 3
dna update 2008.12.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BT072456_1(BT072456|pid:none) Salmo salar clone ssal-rgf-526-105... 190 3e-76
BC091271_1(BC091271|pid:none) Rattus norvegicus nicotinamide nuc... 238 3e-75
S54876(S54876) NAD(P) transhydrogenase (B-specific) (EC 1.6.1.1)... 238 3e-75
AK088044_1(AK088044|pid:none) Mus musculus 2 days neonate thymus... 238 3e-75
AK040460_1(AK040460|pid:none) Mus musculus 0 day neonate thymus ... 238 3e-75
AK085903_1(AK085903|pid:none) Mus musculus 16 days neonate heart... 236 3e-75
(Q13423) RecName: Full=NAD(P) transhydrogenase, mitochondrial; ... 243 5e-75
AK297558_1(AK297558|pid:none) Homo sapiens cDNA FLJ61320 complet... 186 5e-75
AK299622_1(AK299622|pid:none) Homo sapiens cDNA FLJ57576 complet... 186 5e-75
(P11024) RecName: Full=NAD(P) transhydrogenase, mitochondrial; ... 240 7e-75
protein update 2009. 7.20
PSORT

psg: 0.66 gvh: 0.48 alm: 0.30 top: 0.53 tms: 0.20 mit: 0.25 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
28.0 %: plasma membrane
20.0 %: mitochondrial
4.0 %: Golgi
4.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for VHP154 is end

5' end seq. ID VHP154F
5' end seq.
>VHP154F.Seq
TACAACTGCAGCTAATTTATTCAAGAAAACCGATATATTACTAAAGGTTAGAGGTCCACA
ATTTAATACAAACTTGGGTAAACATGAAGTTGAAATGATGAAAGAAGGTGCTACAGTAAT
TAGCTTTTTATCACCAGCACAAAATGCAGAAACTTTAAAGTTACTATCACAAAAGAAAGC
TAATGCCATTGCAGTTGATTGTATACCAAGAATTAGTAGAGCACAGGTTTTTGATGGTTT
ATCATCAATGGCAAATATTGCAGGTTATAAAGCAGTGATGGAGGCATCCAACTATTTTGG
TAGATTCTTTGGTGGAGCCATTACAGCCGCTGGTAGAGTTCAGCCTGCTAAAGTATTGGT
TATTGGTGCTGGTGTTGCTGGTTTATCTGCTATTGGTACCGCTAAAAATATTGGTGCTAT
CGTTAGAGCATTCGATACTAGATCTGTTACCAAAGAACAAGTTGAATCATTGGGTGGTGA
ATTTTTAGAAGTGAAAATCAAAGAGAGTGGAGAAGGTTCAGGTGGCTATGCAAAACACAT
GTCAAAGGAATACATTGAGGCTGAAATGGCATTGTTTGAACGTCAATGTAAAGAAGTGGA
TATCGTANNNNNNNNNN
Length of 5' end seq. 617
3' end seq. ID VHP154Z
3' end seq.
>VHP154Z.Seq
NNNNNNNNNNTCTTTCATTCATTCAAGGTCATTTATTAACCGCTGCAATTAATGGTCCAG
ATATGCCAGTTGTTGTAACTGTATTAAATAGTTATTCAGGTTGGGCATTGGTTGCTGAAG
GTTTCATGTTAGATTCATCCCTATTGAATATTGTTGGTGCAATTGTTGGTTCAAGTGGTG
CAATCTTATCATATATCATGTGTAAAGCTATGAATAGAAATCTTATGAGTGTTATTTTAG
GTGGTGTTGGTACATCAAGTATGGGAAAAGGTGAAGCAATGAAAATCACAGGTACTCACA
CTGAAATCAATGTTGATCAAGCAAGTGAAATGATTACCAACTCTAAAAATATTCTCATTG
TACCAGGTTATGGTATGGTTGTTAGTAAAAGTCAATATCCAGTTGCAGAGATGGTTAAAA
CTTTAATCCAGAAATGAAAGATATAGATTTAGCGATCGTAATTGGTGCAAATGATACCGT
CAATAGTGCATCAGTTGAAGATCCAAATTCAATTATCGCTGGTATGCCAGTTATTGAAGT
TTGGAAAGCAAAACATTGTATCGTTATGAAACGTTCATTAACAAATGCTGGTTATGCCGA
TATTCAAAATCCAGTATTTTATAAACCAAATACTTCAATGTTATTAGGTGATGCTACAAA
CACTTGTAAAGAATGGCAAATAAAATGNATAAACATTATAATTCTNCTCATAAAA
Length of 3' end seq. 715
Connected seq. ID VHP154P
Connected seq.
>VHP154P.Seq
TACAACTGCAGCTAATTTATTCAAGAAAACCGATATATTACTAAAGGTTAGAGGTCCACA
ATTTAATACAAACTTGGGTAAACATGAAGTTGAAATGATGAAAGAAGGTGCTACAGTAAT
TAGCTTTTTATCACCAGCACAAAATGCAGAAACTTTAAAGTTACTATCACAAAAGAAAGC
TAATGCCATTGCAGTTGATTGTATACCAAGAATTAGTAGAGCACAGGTTTTTGATGGTTT
ATCATCAATGGCAAATATTGCAGGTTATAAAGCAGTGATGGAGGCATCCAACTATTTTGG
TAGATTCTTTGGTGGAGCCATTACAGCCGCTGGTAGAGTTCAGCCTGCTAAAGTATTGGT
TATTGGTGCTGGTGTTGCTGGTTTATCTGCTATTGGTACCGCTAAAAATATTGGTGCTAT
CGTTAGAGCATTCGATACTAGATCTGTTACCAAAGAACAAGTTGAATCATTGGGTGGTGA
ATTTTTAGAAGTGAAAATCAAAGAGAGTGGAGAAGGTTCAGGTGGCTATGCAAAACACAT
GTCAAAGGAATACATTGAGGCTGAAATGGCATTGTTTGAACGTCAATGTAAAGAAGTGGA
TATCGTA----------TCTTTCATTCATTCAAGGTCATTTATTAACCGCTGCAATTAAT
GGTCCAGATATGCCAGTTGTTGTAACTGTATTAAATAGTTATTCAGGTTGGGCATTGGTT
GCTGAAGGTTTCATGTTAGATTCATCCCTATTGAATATTGTTGGTGCAATTGTTGGTTCA
AGTGGTGCAATCTTATCATATATCATGTGTAAAGCTATGAATAGAAATCTTATGAGTGTT
ATTTTAGGTGGTGTTGGTACATCAAGTATGGGAAAAGGTGAAGCAATGAAAATCACAGGT
ACTCACACTGAAATCAATGTTGATCAAGCAAGTGAAATGATTACCAACTCTAAAAATATT
CTCATTGTACCAGGTTATGGTATGGTTGTTAGTAAAAGTCAATATCCAGTTGCAGAGATG
GTTAAAACTTTAATCCAGAAATGAAAGATATAGATTTAGCGATCGTAATTGGTGCAAATG
ATACCGTCAATAGTGCATCAGTTGAAGATCCAAATTCAATTATCGCTGGTATGCCAGTTA
TTGAAGTTTGGAAAGCAAAACATTGTATCGTTATGAAACGTTCATTAACAAATGCTGGTT
ATGCCGATATTCAAAATCCAGTATTTTATAAACCAAATACTTCAATGTTATTAGGTGATG
CTACAAACACTTGTAAAGAATGGCAAATAAAATGNATAAACATTATAATTCTNCTCATAA
AA
Length of connected seq. 1312
Full length Seq ID -
Full length Seq. -
Length of full length seq. -