AFB744
Library AF
(Link to library)
Clone ID AFB744
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFB744P
(Link to Original site)
Representative DNA sequence
>AFB744 (AFB744Q) /CSM/AF/AFB7-B/AFB744Q.Seq.d/
ATTTTTTCTACCATATTTTTTTGTAAATAGTAATAATTAATAATAATTTTTTAAATTCTT
TATTTTTTTAAACATATAAAAATTTTTTTTTTCCTTTGTATATTATTTTTTTTTCCATTT
TTNCATATTAATTAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATCACAT
TGGAAGTTGAAGGTAGNGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAG
GTNTTCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAACAATTANAANATGGTCGTN
CTCTTTCTGATTNCAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTAGATTAAGAG
GNGGTATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACCTTANAGGTTGAAG
GTAGTGATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTNTCCCACCAG
ATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAANATGGTCGTACTCTCTCTGACT
ACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCAGATTAAGAGGGGGTATGCAAA
TCTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGNTTCTGNCAAC
ATTGGAAAATGTTAAAGCCAAATCCAANNAAAGAANGTNTCCCNCCAGATCAACAAGATT
AATTTTCGCTGGTNAAACAATTAGAANAAGGGCGGACTTTTTTNTGNCTNCACATTCAAA
AGNANNCCCCTCNCCCTTTTANTTTTAANATTAAAAGGGGGNTTGCCAAATTTTGTTAAA
CCTTCCCTGGAAAACCCTNNCCTTAXXXXXXXXXXTGACTNCAACATCCAAAAAGAATCC
CCCCTCTCCCATTTAGTTTTAANATTAANAGGNGGTATGCAAATTTTTGTTAAAANCTCT
TCNCTGGTAAAACCATCCCCTTGGAAGTCGAAAGGTAGTGATAACATTGAAAATGTCAAA
GCCAAAATCCAAGACAAAGAAGGTATTCCCCCANATCAACAANGTTTCATTTTNGCTGGT
AAACAATTANAANATGGCCGNACTCTCTNTGATTACAACATCCAAAAANAATCCCCTNTC
CATTTAGTTNTCANATTAAAAGGTGGNATGCAAATNTTTGTAAAAACCTTGNCTGGNAAN
ACCATCNCATTGGAAGTNGAAGGTTTTGATAACATTNAAAATGTNAAANCCAAAATTCAA
NACAAANAAGGTATTCCNCCAGATCAACAAANATTAATTTTNGCTGGNAAACAATTANAA
NATGGTNGNACTNTNTNTGACTACAANATTCAAAAGGAATCCNCTNTCCNTTTAGTTNTC
ANATTAAAAGGTGGNANGCAAATNTTTGTTAAAACTTTAACAGGTAAAACNATCCCCNTG
GAAGTNGAAGGTAGTGATAACNTTGAAAATGTTAAAGCCAAAANCCNAGACAAANAAGGN
ATTCCCCCNGATCAACAACGNNTCATTTTCGCTGGNAAACAATTANAANAAGGTCGGACN
CNCNCCGATTACAACNTTCAAAAGGAANCCCCNCNCCCTTTAGNTCNCAGATTAANAGG
sequence update 2001. 6. 1
Translated Amino Acid sequence
ifstiffck***liiif*ilyffkhikiffflcilfffpfxhin*lckfllklslvkpsh
wklkvxttlkmsrlkfktkkvfhqinkd*sllvnnxxmvvlflixtfkrnplsi*fld*e
xvcksl*klslvkpspxrlkvvitlkmlklkfktkkvshqinkd*fslvnn*xmvvlslt
ttfkrnplstwfsd*egvcksl*kp*lvklspwkskxsxnigkc*sqiqxkxvsxqinki
nfrwxnn*XKGGLFXXXTFKXXPLXLLXLXLKGGLPNFVKPSLENPXL---

---DXNIQKESPLSHLVLXLXGGMQIFVKXSSLVKPSPWKSKGSDNIENVKAKIQDKEGI
PPXQQXFIXAGKQLXXGRTLXDYNIQKXSPXHLVXXLKGGMQXFVKTLXGXTIXLEVEGF
DNIXNVKXKIQXKXGIPPDQQXLIXAGKQLXXGXTXXDYXIQKESXXXLVXXLKGGXQXF
VKTLTGKTIPXEVEGSDNXENVKAKXXDKXGIPPDQQRXIFAGKQLXXGRTXXDYNXQKE
XPXPLXXRLX


Translated Amino Acid sequence (All Frames)
Frame A:
ifstiffck***liiif*ilyffkhikiffflcilfffpfxhin*lckfllklslvkpsh
wklkvxttlkmsrlkfktkkvfhqinkd*sllvnnxxmvvlflixtfkrnplsi*fld*e
xvcksl*klslvkpspxrlkvvitlkmlklkfktkkvshqinkd*fslvnn*xmvvlslt
ttfkrnplstwfsd*egvcksl*kp*lvklspwkskxsxnigkc*sqiqxkxvsxqinki
nfrwxnn*XKGGLFXXXTFKXXPLXLLXLXLKGGLPNFVKPSLENPXL---

---*lqhpkripplpfsfxixrxyanfc*xlfxgktiplever***h*kcqsqnprqrry
spxstxfhfxw*tixxwpxsl*lqhpkxipxpfsxxikrwxanxcknlxwxxhxigsxrf
**hxkcxxqnsxqxrysxrstxinfxwxtixxwxxxx*lqxskgixxpfsxxikrwxanx
c*nfnr*nxpxgsxr***x*kc*sqxprqxrxspxsttxhfrwxtixxrsdxxrlqxskg
xpxpfxsqixr

Frame B:
fflpyffvnsnn***ffkffiflni*kfffsfvyyfffhfxilinyanfc*nshw*nhhi
gs*r*xqh*kcqg*nsrqrrxstrstkinlcw*tixxwsxsf*xqhskgihspfss*ikr
xyanlcknshw*nhhlxg*r***h*kc*s*nsrqrrxptrstkinfrw*tirxwsysl*l
qhskgihsplgsqikrgyanlcknldw*nyhlgsrrxlxtlenvkaksxxrxxpxrstrl
ifagxtirxradffxxxhskxxpspfxf*x*kgxcqillnlpwktlxl---

---DXNIQKESPLSHLVLXLXGGMQIFVKXSSLVKPSPWKSKGSDNIENVKAKIQDKEGI
PPXQQXFIXAGKQLXXGRTLXDYNIQKXSPXHLVXXLKGGMQXFVKTLXGXTIXLEVEGF
DNIXNVKXKIQXKXGIPPDQQXLIXAGKQLXXGXTXXDYXIQKESXXXLVXXLKGGXQXF
VKTLTGKTIPXEVEGSDNXENVKAKXXDKXGIPPDQQRXIFAGKQLXXGRTXXDYNXQKE
XPXPLXXRLX

Frame C:
ffyhifl*iviinnnflnslff*tyknfffplyiiffsifxy*limqifvktltgktitl
evegxdnienvkakiqdkegxppdqqrlifagkqlxxgrxlsdxniqkestlhlvlrlrg
gmqifvktltgktitlxvegsdnienvkakiqdkegxppdqqrlifagkqlexgrtlsdy
niqkestlhlvlrlrggmqifvktltgktitlevegfxqhwkmlkpnpxkexxppdqqd*
fslvkqlexgrtfxxlhiqkxxpxpfxfxikrgxakfc*tfpgkpxp---

---txtskknppspi*f*x*xxvckfllkxlxw*nhplgsrkvvitlkmskpksktkkvf
pxinxvsfxlvnnxxmaxlsxittskxnplsi*xsx*kvxckxl*kpxlxxpshwkxkvl
itxkmxxpkfxtxkvfxqinkx*fxlxnnxxmvxlxxttxfkrnplsx*xsx*kvxxkxl
lkl*qvkxspwkxkvvitlkmlkpkxxtxkxfpxinnxsfslxnnxxkvgxxpittfkrx
pxxl*xxd*x

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFB744 (AFB744Q) /CSM/AF/AFB7-B/AFB744Q.Seq.d/ 2258 0.0
CFD132 (CFD132Q) /CSM/CF/CFD1-B/CFD132Q.Seq.d/ 1045 0.0
CFD217 (CFD217Q) /CSM/CF/CFD2-A/CFD217Q.Seq.d/ 1033 0.0
SFI844 (SFI844Q) /CSM/SF/SFI8-B/SFI844Q.Seq.d/ 1027 0.0
CFK313 (CFK313Q) /CSM/CF/CFK3-A/CFK313Q.Seq.d/ 1025 0.0
CHC452 (CHC452Q) /CSM/CH/CHC4-C/CHC452Q.Seq.d/ 1023 0.0
SFG626 (SFG626Q) /CSM/SF/SFG6-B/SFG626Q.Seq.d/ 1021 0.0
AFL428 (AFL428Q) /CSM/AF/AFL4-B/AFL428Q.Seq.d/ 1017 0.0
CFB835 (CFB835Q) /CSM/CF/CFB8-B/CFB835Q.Seq.d/ 1009 0.0
VFH324 (VFH324Q) /CSM/VF/VFH3-A/VFH324Q.Seq.d/ 1003 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14. 987 0.0 8
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2. 529 0.0 6
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds. 270 0.0 6
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19. 270 0.0 6
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C. 270 0.0 7
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18. 561 0.0 2
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17. 561 0.0 2
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds. 511 e-169 3
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin. 186 e-119 10
U32627|U32627.1 Candida albicans ubiquitin precursor (CaUBI1) mRNA, complete cds. 194 e-103 8
dna update 2003. 7.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

S43306(S43306)polyubiquitin 6 - Geodia cydonium 309 e-156
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 337 5e-91
A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict... 336 2e-90
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge... 336 2e-90
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty... 336 2e-90
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos... 333 1e-89
D63791_1(D63791|pid:none) Homo sapiens UbC gene for polyubiquiti... 323 1e-87
EF134146_1(EF134146|pid:none) Karlodinium micrum strain CCMP1975... 320 1e-87
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 325 2e-87
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu... 325 2e-87
protein update 2009. 3.27
PSORT

psg: 0.90 gvh: 0.61 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: Golgi

>> prediction for AFB744 is cyt

5' end seq. ID AFB744F
5' end seq.
>AFB744F.Seq
ATTTTTTCTACCATATTTTTTTGTAAATAGTAATAATTAATAATAATTTTTTAAATTCTT
TATTTTTTTAAACATATAAAAATTTTTTTTTTCCTTTGTATATTATTTTTTTTTCCATTT
TTNCATATTAATTAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATCACAT
TGGAAGTTGAAGGTAGNGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAG
GTNTTCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAACAATTANAANATGGTCGTN
CTCTTTCTGATTNCAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTAGATTAAGAG
GNGGTATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACCTTANAGGTTGAAG
GTAGTGATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTNTCCCACCAG
ATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAANATGGTCGTACTCTCTCTGACT
ACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCAGATTAAGAGGGGGTATGCAAA
TCTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGNTTCTGNCAAC
ATTGGAAAATGTTAAAGCCAAATCCAANNAAAGAANGTNTCCCNCCAGATCAACAAGATT
AATTTTCGCTGGTNAAACAATTAGAANAAGGGCGGACTTTTTTNTGNCTNCACATTCAAA
AGNANNCCCCTCNCCCTTTTANTTTTAANATTAAAAGGGGGNTTGCCAAATTTTGTTAAA
CCTTCCCTGGAAAACCCTNNCCTTA----------
Length of 5' end seq. 865
3' end seq. ID AFB744Z
3' end seq.
>AFB744Z.Seq
----------TGACTNCAACATCCAAAAAGAATCCCCCCTCTCCCATTTAGTTTTAANAT
TAANAGGNGGTATGCAAATTTTTGTTAAAANCTCTTCNCTGGTAAAACCATCCCCTTGGA
AGTCGAAAGGTAGTGATAACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTA
TTCCCCCANATCAACAANGTTTCATTTTNGCTGGTAAACAATTANAANATGGCCGNACTC
TCTNTGATTACAACATCCAAAAANAATCCCCTNTCCATTTAGTTNTCANATTAAAAGGTG
GNATGCAAATNTTTGTAAAAACCTTGNCTGGNAANACCATCNCATTGGAAGTNGAAGGTT
TTGATAACATTNAAAATGTNAAANCCAAAATTCAANACAAANAAGGTATTCCNCCAGATC
AACAAANATTAATTTTNGCTGGNAAACAATTANAANATGGTNGNACTNTNTNTGACTACA
ANATTCAAAAGGAATCCNCTNTCCNTTTAGTTNTCANATTAAAAGGTGGNANGCAAATNT
TTGTTAAAACTTTAACAGGTAAAACNATCCCCNTGGAAGTNGAAGGTAGTGATAACNTTG
AAAATGTTAAAGCCAAAANCCNAGACAAANAAGGNATTCCCCCNGATCAACAACGNNTCA
TTTTCGCTGGNAAACAATTANAANAAGGTCGGACNCNCNCCGATTACAACNTTCAAAAGG
AANCCCCNCNCCCTTTAGNTCNCAGATTAANAGG
Length of 3' end seq. 744
Connected seq. ID AFB744P
Connected seq.
>AFB744P.Seq
ATTTTTTCTACCATATTTTTTTGTAAATAGTAATAATTAATAATAATTTTTTAAATTCTT
TATTTTTTTAAACATATAAAAATTTTTTTTTTCCTTTGTATATTATTTTTTTTTCCATTT
TTNCATATTAATTAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATCACAT
TGGAAGTTGAAGGTAGNGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAG
GTNTTCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAACAATTANAANATGGTCGTN
CTCTTTCTGATTNCAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTAGATTAAGAG
GNGGTATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACCTTANAGGTTGAAG
GTAGTGATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTNTCCCACCAG
ATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAANATGGTCGTACTCTCTCTGACT
ACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCAGATTAAGAGGGGGTATGCAAA
TCTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGNTTCTGNCAAC
ATTGGAAAATGTTAAAGCCAAATCCAANNAAAGAANGTNTCCCNCCAGATCAACAAGATT
AATTTTCGCTGGTNAAACAATTAGAANAAGGGCGGACTTTTTTNTGNCTNCACATTCAAA
AGNANNCCCCTCNCCCTTTTANTTTTAANATTAAAAGGGGGNTTGCCAAATTTTGTTAAA
CCTTCCCTGGAAAACCCTNNCCTTA----------TGACTNCAACATCCAAAAAGAATCC
CCCCTCTCCCATTTAGTTTTAANATTAANAGGNGGTATGCAAATTTTTGTTAAAANCTCT
TCNCTGGTAAAACCATCCCCTTGGAAGTCGAAAGGTAGTGATAACATTGAAAATGTCAAA
GCCAAAATCCAAGACAAAGAAGGTATTCCCCCANATCAACAANGTTTCATTTTNGCTGGT
AAACAATTANAANATGGCCGNACTCTCTNTGATTACAACATCCAAAAANAATCCCCTNTC
CATTTAGTTNTCANATTAAAAGGTGGNATGCAAATNTTTGTAAAAACCTTGNCTGGNAAN
ACCATCNCATTGGAAGTNGAAGGTTTTGATAACATTNAAAATGTNAAANCCAAAATTCAA
NACAAANAAGGTATTCCNCCAGATCAACAAANATTAATTTTNGCTGGNAAACAATTANAA
NATGGTNGNACTNTNTNTGACTACAANATTCAAAAGGAATCCNCTNTCCNTTTAGTTNTC
ANATTAAAAGGTGGNANGCAAATNTTTGTTAAAACTTTAACAGGTAAAACNATCCCCNTG
GAAGTNGAAGGTAGTGATAACNTTGAAAATGTTAAAGCCAAAANCCNAGACAAANAAGGN
ATTCCCCCNGATCAACAACGNNTCATTTTCGCTGGNAAACAATTANAANAAGGTCGGACN
CNCNCCGATTACAACNTTCAAAAGGAANCCCCNCNCCCTTTAGNTCNCAGATTAANAGG
Length of connected seq. 1609
Full length Seq ID -
Full length Seq. -
Length of full length seq. -