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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP126
Library VH
(Link to library)
Clone ID VHP126
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16379-1
Original site URL
Representative seq. ID VHP126P
(Link to Original site)
Representative DNA sequence 
>VHP126 (VHP126Q) /CSM/VH/VHP1-B/VHP126Q.Seq.d/
TTTATAATTTCACTTGTTTATTTTAATTTTATACATATAAATAATAATATAGTTGAAAAA
ATGTGTGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGATAATATC
GTACCAAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTCAGCGGC
AAAGTTGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCATTCAATT
GACATTGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTACTAT
GAACCAGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAATACA
ATTCTCTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCA
AAATATGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCCACTGAT
GCTCGTCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAATATTAAA
ATCACTATTTCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGTAATTGAA
AATAATGATGGTACTAAAACCTTTATTTTTGAACAAACTCCAAAGATGAGTACTTATATT
GTTGCATTTATAGXXXXXXXXXXTTAATTGAAGATCAACCATACTCAAGTAGATTCAATG
AAATCTTTGTTCAACTTTTGAAACCACTTTCAAAACGTTTAGGTTTCGAGCCAACCAAAG
GTGAACCATCTTCAGATACCTTGTTAAGAGATAAAGTAAACACTAAATTGGGTATGTTGG
GTGATGCTGATATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTT
CAAGTTTACCATCAGATATTCGTTCTACAGTACTTGCTACAATCGTAAAGAATGGTGGTG
AAGCTGATCAACAAATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGA
ATTCTTACCTTTTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCA
ATTTCGCTTTATCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCC
CAAATCGTGTTCGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAAATCAACG
AAACATTTAAAAACTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAAA
TGGATGATTCTCAATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATTG
CTGATCGTTCAATTAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAAG
CTTTTAATCAAGATTTATCAAATGGATTCAATCAAAATAAAAATAAAATCTCTTACAA
sequence update 2002.10.25
Translated Amino Acid sequence 
FIISLVYFNFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLHLRPNLKDFVFSG
KVDITINIVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEEVAILEFQDELPVTENT
ILSIDFTGILNDKLKGFYRSKYVVNGEDRYIGTTQFEATDARRAFPCFDEPALKSFFNIK
ITISSHLTALSNMDTTSVIENNDGTKTFIFEQTPKMSTYIVAFI---

---LIEDQPYSSRFNEIFVQLLKPLSKRLGFEPTKGEPSSDTLLRDKVNTKLGMLGDADI
VAECKKRFEAFKADSSSLPSDIRSTVLATIVKNGGEADQQIIIDQYLKSSLVAEKNSYLL
VLALAPKEELVEKALNFALSPSVRSQDSYMVFFTLPNRVRQFAWAYLTKNFNQINETFKN
SPLFGRIIGSCLTSKMDDSQYNEVVNFFKDHPVPIADRSIKQDLEMVTINSNWFKAFNQD
LSNGFNQNKNKISY
Translated Amino Acid sequence (All Frames) 
Frame A:
FIISLVYFNFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLHLRPNLKDFVFSG
KVDITINIVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEEVAILEFQDELPVTENT
ILSIDFTGILNDKLKGFYRSKYVVNGEDRYIGTTQFEATDARRAFPCFDEPALKSFFNIK
ITISSHLTALSNMDTTSVIENNDGTKTFIFEQTPKMSTYIVAFI---

---LIEDQPYSSRFNEIFVQLLKPLSKRLGFEPTKGEPSSDTLLRDKVNTKLGMLGDADI
VAECKKRFEAFKADSSSLPSDIRSTVLATIVKNGGEADQQIIIDQYLKSSLVAEKNSYLL
VLALAPKEELVEKALNFALSPSVRSQDSYMVFFTLPNRVRQFAWAYLTKNFNQINETFKN
SPLFGRIIGSCLTSKMDDSQYNEVVNFFKDHPVPIADRSIKQDLEMVTINSNWFKAFNQD
LSNGFNQNKNKISY

Frame B:
l*fhlfililyi*iii*lkkcviini*ltk*id*yyqiisyqvntiyildqi*rilysaa
kltlqsillnqpkkslsiqltlkfnq*rs*inkllplptmnqkklqf*nskmnyqlqkiq
fsplislvf*mtn*kvsivqnmlsmvkivilvplnskplmlvvlshvlmnll*nlslilk
slfhli*llfqiwiqll*lkimmvlkplflnklqr*vlillhl*---

---*lkinhtqvdsmkslfnf*nhfqnv*vssqpkvnhlqipc*eik*tlnwvcwvmlis
llnvrkdsklskqtlqvyhqifvlqyllqs*rmvvklinksslinilnll*slkriltfw
yllwlqkrnwlkkpsislylhplevkiviwfslpsqivfvnslgltspktlikstkhlkt
llclvvslvvvsplkwmilntmksstfskiiqfqllivqlnki*kwlqliqigsklliki
yqmdsikikikslt

Frame C:
ynftclf*fytyk**ys*knv*s*tfs*qsr*isitr*yrtk*irfts*tkfkgfciqrq
s*hynqyc*tnqknhypfn*h*nsiskdlkstsyfryll*trrscnfripr*itsyrkyn
slh*fhwyfk*qikrflsfkiccqw*rslywyhsirsh*csscfpmf**tcfkifl*y*n
hyfisfncsfkygynfcn*k**wy*nlyf*tnskdeylycciy---

---n*rstilk*iq*nlcstfettfktfrfranqr*tifrylvkr*skh*igyvg*c*yr
c*m*ekirsfqsrlfkftirysfystcynrkeww*s*stnhh*sis*iffsr*keflpfg
tcfgskrgig*kspqfrfisir*ksr*lygflyppkscssirlglphqkl*snqrni*kl
sfvwsyhw*lshl*ng*fsiq*srqlfqrssssnc*sfn*trfrngyn*fklvqsf*srf
ikwiqsk*k*nllq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP126 (VHP126Q) /CSM/VH/VHP1-B/VHP126Q.Seq.d/                       2750   0.0
VHP808 (VHP808Q) /CSM/VH/VHP8-A/VHP808Q.Seq.d/                       1497   0.0
VHI595 (VHI595Q) /CSM/VH/VHI5-D/VHI595Q.Seq.d/                       1497   0.0
VHC369 (VHC369Q) /CSM/VH/VHC3-C/VHC369Q.Seq.d/                       1469   0.0
AHB710 (AHB710Q) /CSM/AH/AHB7-A/AHB710Q.Seq.d/                       1463   0.0
VHQ308 (VHQ308Q) /CSM/VH/VHQ3-A/VHQ308Q.Seq.d/                       1461   0.0
AHK448 (AHK448Q) /CSM/AH/AHK4-B/AHK448Q.Seq.d/                       1461   0.0
AHA345 (AHA345Q) /CSM/AH/AHA3-B/AHA345Q.Seq.d/                       1461   0.0
AHD767 (AHD767Q) /CSM/AH/AHD7-C/AHD767Q.Seq.d/                       1437   0.0
AHD138 (AHD138Q) /CSM/AH/AHD1-B/AHD138Q.Seq.d/                       1437   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446274) Dictyostelium discoideum cDNA clone:ddv62p02, 3' ...  1497   0.0    1
(BJ445980) Dictyostelium discoideum cDNA clone:ddv61c07, 3' ...  1497   0.0    1
(BJ442127) Dictyostelium discoideum cDNA clone:ddv48m23, 3' ...  1497   0.0    1
(BJ437870) Dictyostelium discoideum cDNA clone:ddv35j17, 3' ...  1469   0.0    1
(BJ353804) Dictyostelium discoideum cDNA clone:dda51p12, 3' ...  1386   0.0    3
(BJ350057) Dictyostelium discoideum cDNA clone:dda38f17, 3' ...  1382   0.0    2
(BJ349706) Dictyostelium discoideum cDNA clone:dda37k09, 3' ...  1382   0.0    2
(BJ441545) Dictyostelium discoideum cDNA clone:ddv47d06, 3' ...  1378   0.0    2
(BJ441669) Dictyostelium discoideum cDNA clone:ddv47o12, 3' ...  1362   0.0    2
(BJ438320) Dictyostelium discoideum cDNA clone:ddv37g14, 3' ...  1356   0.0    2
dna update 2008.12.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY631393_1(AY631393|pid:none) Dictyostelium discoideum puromycin...   248   3e-64
AF327435_1(AF327435|pid:none) Drosophila melanogaster puromycin-...   166   2e-39
AE014296_282(AE014296|pid:none) Drosophila melanogaster chromoso...   166   2e-39
AE014296_281(AE014296|pid:none) Drosophila melanogaster chromoso...   166   2e-39
AM270075_67(AM270075|pid:none) Aspergillus niger contig An04c014...   151   5e-35
AP007157_574(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...   150   1e-34
(P32454) RecName: Full=Aminopeptidase 2, mitochondrial;         ...   146   2e-33
S37794(S37794;S37987;S44571;S19642) aminopeptidase yscII (EC 3.4...   146   2e-33
AF350242_1(AF350242|pid:none) Pichia angusta aminopeptidase gene...   146   2e-33
EF678434_1(EF678434|pid:none) Picea sitchensis clone WS02921_A14...   144   6e-33
protein update 2009. 7.20
PSORT 

 psg: 0.95  gvh: 0.36  alm: 0.41  top: 0.57  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for VHP126 is cyt
5' end seq. ID VHP126F
5' end seq. 
>VHP126F.Seq
TTTATAATTTCACTTGTTTATTTTAATTTTATACATATAAATAATAATATAGTTGAAAAA
ATGTGTGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGATAATATC
GTACCAAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTCAGCGGC
AAAGTTGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCATTCAATT
GACATTGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTACTAT
GAACCAGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAATACA
ATTCTCTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCA
AAATATGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCCACTGAT
GCTCGTCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAATATTAAA
ATCACTATTTCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGTAATTGAA
AATAATGATGGTACTAAAACCTTTATTTTTGAACAAACTCCAAAGATGAGTACTTATATT
GTTGCATTTATAGNNNNNNNNNN
Length of 5' end seq. 683
3' end seq. ID VHP126Z
3' end seq. 
>VHP126Z.Seq
NNNNNNNNNNTTAATTGAAGATCAACCATACTCAAGTAGATTCAATGAAATCTTTGTTCA
ACTTTTGAAACCACTTTCAAAACGTTTAGGTTTCGAGCCAACCAAAGGTGAACCATCTTC
AGATACCTTGTTAAGAGATAAAGTAAACACTAAATTGGGTATGTTGGGTGATGCTGATAT
CGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTTCAAGTTTACCATC
AGATATTCGTTCTACAGTACTTGCTACAATCGTAAAGAATGGTGGTGAAGCTGATCAACA
AATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGAATTCTTACCTTTT
GGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCAATTTCGCTTTATC
TCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCCCAAATCGTGTTCG
TCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAAATCAACGAAACATTTAAAAA
CTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAAATGGATGATTCTCA
ATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATTGCTGATCGTTCAAT
TAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAAGCTTTTAATCAAGA
TTTATCAAATGGATTCAATCAAAATAAAAATAAAATCTCTTACAA
Length of 3' end seq. 765
Connected seq. ID VHP126P
Connected seq. 
>VHP126P.Seq
TTTATAATTTCACTTGTTTATTTTAATTTTATACATATAAATAATAATATAGTTGAAAAA
ATGTGTGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGATAATATC
GTACCAAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTCAGCGGC
AAAGTTGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCATTCAATT
GACATTGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTACTAT
GAACCAGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAATACA
ATTCTCTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCA
AAATATGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCCACTGAT
GCTCGTCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAATATTAAA
ATCACTATTTCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGTAATTGAA
AATAATGATGGTACTAAAACCTTTATTTTTGAACAAACTCCAAAGATGAGTACTTATATT
GTTGCATTTATAG----------TTAATTGAAGATCAACCATACTCAAGTAGATTCAATG
AAATCTTTGTTCAACTTTTGAAACCACTTTCAAAACGTTTAGGTTTCGAGCCAACCAAAG
GTGAACCATCTTCAGATACCTTGTTAAGAGATAAAGTAAACACTAAATTGGGTATGTTGG
GTGATGCTGATATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTT
CAAGTTTACCATCAGATATTCGTTCTACAGTACTTGCTACAATCGTAAAGAATGGTGGTG
AAGCTGATCAACAAATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGA
ATTCTTACCTTTTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCA
ATTTCGCTTTATCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCC
CAAATCGTGTTCGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAAATCAACG
AAACATTTAAAAACTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAAA
TGGATGATTCTCAATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATTG
CTGATCGTTCAATTAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAAG
CTTTTAATCAAGATTTATCAAATGGATTCAATCAAAATAAAAATAAAATCTCTTACAA
Length of connected seq. 1428
Full length Seq ID -
Full length Seq. -
Length of full length seq. -