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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP122
Library VH
(Link to library)
Clone ID VHP122
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11305-1
Original site URL
Representative seq. ID VHP122P
(Link to Original site)
Representative DNA sequence 
>VHP122 (VHP122Q) /CSM/VH/VHP1-A/VHP122Q.Seq.d/
ATATTTAGATATAAAGAAACCAAATTTACCATTAAAAGCAGAAAGTGCTTCAATTGGAAT
TTCAATAACCGACACTTGTAATACAACAAATTTAACCAGTAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATCCAAATAATAATAATAATAATAATCCAAA
TAATAATAATAATAATANTCCAAATAATAATAATAATAANAATAATCCNAATAATAAAAA
TAATAATTTANTTGTTGATAATATAGTTGATTATAATAATTNAACAGNATCACCATTACC
ACTTAATAGAAGTAGAAGTAATAGTATGAATAGTGGACCAACAGTTNATGTAATTAGTAN
TACTACTGGTAGAGGNAGAAGTAGTAGTATGTCAAATAATAGNATGGTGATTAATCAACC
TTGTGGTAGTACTATTACTACNACCAATATCAATTCCAATACCAATAATAATAGTAGTAG
TAGTAGTAGTAGTAGTAATAGTTATTATAATTATTTTAGTAGAAAGAGTAATAATAATAA
AAAAATTAAAGTACCAAGTTCACCATAATCAATTGGAGGTATGGGAATAATGGGAGGTGG
TAXXXXXXXXXXTTATTAAAAACTCATAAAAACCAATTAAAGAAACAAAAGGATATTGAA
AAGTTTTTGTCAACTTTAAACAAATTAAATTTACAAATGTTTGATGCTGATGCTTTAATT
AAAGTTGCTTTTGAAAGTATCTCTTTAAAAAGAAGTCATTTAGAAGATATCAATGATAAA
CAAAATCATAAAGTTAAAGATGTACCTGAACCCGCACCAATTTATTATAGATCAAAAATT
ACAATACCTTCTGTAATTTTAAATTCTGATGATTTTGAATTAATTTGGGCATGGTTACCA
CCAAGATTATCAGTTGCAACACCAAGAAAATTATTCAATTCAGTTACAGATGGTAATAAT
GTTAGATTATTATTTGAAAGTTTAGTTGAACATACTTGTATTTTAGTAGTTTTAAAATCT
GATAATGGAAGTATTTTTGGATTTTATAGTGACTCTGAAGTTCAACCAAAGTTTGGTTTT
GGTGATAGAAATGTCTTTTTATTCACTCTTAAACCTCATGTTCATGTTTATAAACCAACT
GAAAAAAATCAATTATATACAAGTTTTAAAGAACAATCAATTTCAATTGGTCATTCAAAT
TTGGGAGAGATAGGATTATTTATTGGTGCAGATTTAAATGGTAAAACTGGTGCCACGGAA
ACTTTTGGAAACCCATGTTTGAATGATAAAGATCAACATACTTTCCAAACTATTGTTTTA
GAAGCATTCACAATTGAACAATAAAAAAATATAATAACATGTAATTATAACAACAAATAC
CAACAAAGTAAATATTTTTTAGAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
ifryketkftiksrkcfnwnfnnrhl*ynkfnq*****************sk******sk
*****xsk*****x*sx**k**fxc**ys*l**xnxititt**k*k**ye*wtnsxcn*x
yyw*rxk**yvk**xgd*stlw*yyyyxqyqfqyq************ll*lf**ke****
kn*STKFTIINWRYGNNGRW---

---LLKTHKNQLKKQKDIEKFLSTLNKLNLQMFDADALIKVAFESISLKRSHLEDINDKQ
NHKVKDVPEPAPIYYRSKITIPSVILNSDDFELIWAWLPPRLSVATPRKLFNSVTDGNNV
RLLFESLVEHTCILVVLKSDNGSIFGFYSDSEVQPKFGFGDRNVFLFTLKPHVHVYKPTE
KNQLYTSFKEQSISIGHSNLGEIGLFIGADLNGKTGATETFGNPCLNDKDQHTFQTIVLE
AFTIEQ*kniitcnynnkyqqskyfle
Translated Amino Acid sequence (All Frames) 
Frame A:
ifryketkftiksrkcfnwnfnnrhl*ynkfnq*****************sk******sk
*****xsk*****x*sx**k**fxc**ys*l**xnxititt**k*k**ye*wtnsxcn*x
yyw*rxk**yvk**xgd*stlw*yyyyxqyqfqyq************ll*lf**ke****
kn*STKFTIINWRYGNNGRW---

---LLKTHKNQLKKQKDIEKFLSTLNKLNLQMFDADALIKVAFESISLKRSHLEDINDKQ
NHKVKDVPEPAPIYYRSKITIPSVILNSDDFELIWAWLPPRLSVATPRKLFNSVTDGNNV
RLLFESLVEHTCILVVLKSDNGSIFGFYSDSEVQPKFGFGDRNVFLFTLKPHVHVYKPTE
KNQLYTSFKEQSISIGHSNLGEIGLFIGADLNGKTGATETFGNPCLNDKDQHTFQTIVLE
AFTIEQ*kniitcnynnkyqqskyfle

Frame B:
yldikkpnlplkaesasigisitdtcnttnltsnnnnnnnnnnnnnnnnnpnnnnnnnpn
nnnnnxpnnnnnxnnpnnknnnlxvdnivdynnxtxsplplnrsrsnsmnsgptvxvisx
ttgrgrsssmsnnxmvinqpcgstitttninsntnnnssssssssnsyynyfsrksnnnk
kikvpssp*siggmgimggg---

---y*kliktn*rnkrilksfcql*tn*iykclmlml*lklllkvsl*kevi*kismink
iiklkmylnphqfiidqklqyll*f*ilmiln*fghgyhqdyqlqhqenysiqlqmviml
dyylkv*lnilvf**f*nlimevfldfivtlkfnqslvlviemsfysllnlmfmfinqlk
kinyiqvlknnqfqlviqiwer*dyllvqi*mvklvprkllethv*mikinilskllf*k
hsqlnnkki**hviittntnkvnif*n

Frame C:
i*i*rnqiyh*kqkvlqlefq*ptlviqqi*pviiiiiiiiiiiiiiiiiqiiiiiiiqi
iiiiixqiiiiixiixiikiiixllii*liiiixqxhhyhlieveviv*ivdqqxm*lvx
llvexevvvcqiixw*linlvvvlllxpisipipiiivvvvvvvviviiiilverviiik
klkyqvhhnqlevwe*wevv---

---ikns*kpiketkgy*kvfvnfkqikftnv*c*cfn*scf*kylfkkksfrryq**tk
s*s*rct*trtnll*iknyntfcnfkf**f*inlgmvttkiiscntkkiiqfsyrw**c*
iii*kfs*tylyfssfki**wkyfwil**l*sstkvwfw**kclfihs*tscscl*tn*k
ksiiykf*rtinfnwsfkfgrdriiywcrfkw*nwchgnfwkpmfe**rstyfpnycfrs
ihn*tikkynnm*l*qqiptk*iffri
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP122 (VHP122Q) /CSM/VH/VHP1-A/VHP122Q.Seq.d/                       1564   0.0
AHE595 (AHE595Q) /CSM/AH/AHE5-D/AHE595Q.Seq.d/                       1358   0.0
CHQ878 (CHQ878Q) /CSM/CH/CHQ8-D/CHQ878Q.Seq.d/                       1310   0.0
SSH756 (SSH756Q) /CSM/SS/SSH7-C/SSH756Q.Seq.d/                        442   e-123
SSB351 (SSB351Q) /CSM/SS/SSB3-C/SSB351Q.Seq.d/                        398   e-110
VSF338 (VSF338Q) /CSM/VS/VSF3-B/VSF338Q.Seq.d/                        254   3e-66
SLE231 (SLE231Q) /CSM/SL/SLE2-B/SLE231Q.Seq.d/                         38   0.36
SHE221 (SHE221Q) /CSM/SH/SHE2-A/SHE221Q.Seq.d/                         38   0.36
AFM171 (AFM171Q) /CSM/AF/AFM1-C/AFM171Q.Seq.d/                         38   0.36
AFE528 (AFE528Q) /CSM/AF/AFE5-B/AFE528Q.Seq.d/                         38   0.36
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ445944) Dictyostelium discoideum cDNA clone:ddv61k05, 3' ...  1049   0.0    3
(BJ350755) Dictyostelium discoideum cDNA clone:dda40m23, 3' ...   955   0.0    3
(BJ385714) Dictyostelium discoideum cDNA clone:ddc55l20, 3' ...   912   0.0    3
(BJ427058) Dictyostelium discoideum cDNA clone:ddv61k05, 5' ...   339   e-166  3
(AU038467) Dictyostelium discoideum slug cDNA, clone SSH756.      385   e-118  2
(BJ332815) Dictyostelium discoideum cDNA clone:dda40m23, 5' ...   327   e-118  2
(C84230) Dictyostelium discoideum slug cDNA, clone SSB351.        341   e-105  2
(BJ370906) Dictyostelium discoideum cDNA clone:ddc55l20, 5' ...   327   e-103  2
(AU265076) Dictyostelium discoideum vegetative cDNA clone:VS...   196   2e-61  2
(AU265077) Dictyostelium discoideum vegetative cDNA clone:VS...   174   6e-39  1
dna update 2008.12.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX890617_4(BX890617|pid:none) Zebrafish DNA sequence from clone ...    80   2e-13
BC097465_1(BC097465|pid:none) Rattus norvegicus oxidation resist...    79   5e-13
AF333986_1(AF333986|pid:none) Rattus norvegicus nucleolar protei...    79   5e-13
AF324899_1(AF324899|pid:none) Mus musculus nucleolar protein C7 ...    78   7e-13
(Q4KMM3) RecName: Full=Oxidation resistance protein 1; AltName: ...    78   7e-13
BC089183_1(BC089183|pid:none) Mus musculus oxidation resistance ...    78   7e-13
AK296561_1(AK296561|pid:none) Homo sapiens cDNA FLJ56044 complet...    77   1e-12
AX405744_1(AX405744|pid:none) Sequence 159 from Patent WO0222660.      77   1e-12
BC098491_1(BC098491|pid:none) Mus musculus oxidation resistance ...    77   1e-12
CR860526_1(CR860526|pid:none) Pongo abelii mRNA; cDNA DKFZp468F0...    77   2e-12
protein update 2009. 7.20
PSORT 

 psg: 0.59  gvh: 0.35  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: mitochondrial
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VHP122 is nuc
5' end seq. ID VHP122F
5' end seq. 
>VHP122F.Seq
ATATTTAGATATAAAGAAACCAAATTTACCATTAAAAGCAGAAAGTGCTTCAATTGGAAT
TTCAATAACCGACACTTGTAATACAACAAATTTAACCAGTAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATCCAAATAATAATAATAATAATAATCCAAA
TAATAATAATAATAATANTCCAAATAATAATAATAATAANAATAATCCNAATAATAAAAA
TAATAATTTANTTGTTGATAATATAGTTGATTATAATAATTNAACAGNATCACCATTACC
ACTTAATAGAAGTAGAAGTAATAGTATGAATAGTGGACCAACAGTTNATGTAATTAGTAN
TACTACTGGTAGAGGNAGAAGTAGTAGTATGTCAAATAATAGNATGGTGATTAATCAACC
TTGTGGTAGTACTATTACTACNACCAATATCAATTCCAATACCAATAATAATAGTAGTAG
TAGTAGTAGTAGTAGTAATAGTTATTATAATTATTTTAGTAGAAAGAGTAATAATAATAA
AAAAATTAAAGTACCAAGTTCACCATAATCAATTGGAGGTATGGGAATAATGGGAGGTGG
TANNNNNNNNNN
Length of 5' end seq. 612
3' end seq. ID VHP122Z
3' end seq. 
>VHP122Z.Seq
NNNNNNNNNNTTATTAAAAACTCATAAAAACCAATTAAAGAAACAAAAGGATATTGAAAA
GTTTTTGTCAACTTTAAACAAATTAAATTTACAAATGTTTGATGCTGATGCTTTAATTAA
AGTTGCTTTTGAAAGTATCTCTTTAAAAAGAAGTCATTTAGAAGATATCAATGATAAACA
AAATCATAAAGTTAAAGATGTACCTGAACCCGCACCAATTTATTATAGATCAAAAATTAC
AATACCTTCTGTAATTTTAAATTCTGATGATTTTGAATTAATTTGGGCATGGTTACCACC
AAGATTATCAGTTGCAACACCAAGAAAATTATTCAATTCAGTTACAGATGGTAATAATGT
TAGATTATTATTTGAAAGTTTAGTTGAACATACTTGTATTTTAGTAGTTTTAAAATCTGA
TAATGGAAGTATTTTTGGATTTTATAGTGACTCTGAAGTTCAACCAAAGTTTGGTTTTGG
TGATAGAAATGTCTTTTTATTCACTCTTAAACCTCATGTTCATGTTTATAAACCAACTGA
AAAAAATCAATTATATACAAGTTTTAAAGAACAATCAATTTCAATTGGTCATTCAAATTT
GGGAGAGATAGGATTATTTATTGGTGCAGATTTAAATGGTAAAACTGGTGCCACGGAAAC
TTTTGGAAACCCATGTTTGAATGATAAAGATCAACATACTTTCCAAACTATTGTTTTAGA
AGCATTCACAATTGAACAATAAAAAAATATAATAACATGTAATTATAACAACAAATACCA
ACAAAGTAAATATTTTTTAGAATA
Length of 3' end seq. 804
Connected seq. ID VHP122P
Connected seq. 
>VHP122P.Seq
ATATTTAGATATAAAGAAACCAAATTTACCATTAAAAGCAGAAAGTGCTTCAATTGGAAT
TTCAATAACCGACACTTGTAATACAACAAATTTAACCAGTAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATCCAAATAATAATAATAATAATAATCCAAA
TAATAATAATAATAATANTCCAAATAATAATAATAATAANAATAATCCNAATAATAAAAA
TAATAATTTANTTGTTGATAATATAGTTGATTATAATAATTNAACAGNATCACCATTACC
ACTTAATAGAAGTAGAAGTAATAGTATGAATAGTGGACCAACAGTTNATGTAATTAGTAN
TACTACTGGTAGAGGNAGAAGTAGTAGTATGTCAAATAATAGNATGGTGATTAATCAACC
TTGTGGTAGTACTATTACTACNACCAATATCAATTCCAATACCAATAATAATAGTAGTAG
TAGTAGTAGTAGTAGTAATAGTTATTATAATTATTTTAGTAGAAAGAGTAATAATAATAA
AAAAATTAAAGTACCAAGTTCACCATAATCAATTGGAGGTATGGGAATAATGGGAGGTGG
TA----------TTATTAAAAACTCATAAAAACCAATTAAAGAAACAAAAGGATATTGAA
AAGTTTTTGTCAACTTTAAACAAATTAAATTTACAAATGTTTGATGCTGATGCTTTAATT
AAAGTTGCTTTTGAAAGTATCTCTTTAAAAAGAAGTCATTTAGAAGATATCAATGATAAA
CAAAATCATAAAGTTAAAGATGTACCTGAACCCGCACCAATTTATTATAGATCAAAAATT
ACAATACCTTCTGTAATTTTAAATTCTGATGATTTTGAATTAATTTGGGCATGGTTACCA
CCAAGATTATCAGTTGCAACACCAAGAAAATTATTCAATTCAGTTACAGATGGTAATAAT
GTTAGATTATTATTTGAAAGTTTAGTTGAACATACTTGTATTTTAGTAGTTTTAAAATCT
GATAATGGAAGTATTTTTGGATTTTATAGTGACTCTGAAGTTCAACCAAAGTTTGGTTTT
GGTGATAGAAATGTCTTTTTATTCACTCTTAAACCTCATGTTCATGTTTATAAACCAACT
GAAAAAAATCAATTATATACAAGTTTTAAAGAACAATCAATTTCAATTGGTCATTCAAAT
TTGGGAGAGATAGGATTATTTATTGGTGCAGATTTAAATGGTAAAACTGGTGCCACGGAA
ACTTTTGGAAACCCATGTTTGAATGATAAAGATCAACATACTTTCCAAACTATTGTTTTA
GAAGCATTCACAATTGAACAATAAAAAAATATAATAACATGTAATTATAACAACAAATAC
CAACAAAGTAAATATTTTTTAGAATA
Length of connected seq. 1396
Full length Seq ID -
Full length Seq. -
Length of full length seq. -