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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP118
Library VH
(Link to library)
Clone ID VHP118
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16423-1
Original site URL
Representative seq. ID VHP118P
(Link to Original site)
Representative DNA sequence 
>VHP118 (VHP118Q) /CSM/VH/VHP1-A/VHP118Q.Seq.d/
AATTTTCATCCACGCGGATAAATTTTTTTAAAGAATTAGTCATTTTATGCCAATTGGAAA
TAACAAAGATAACGATGGAACTACCCTGAATATCTCAGGGTTAACCATCTCTGATAAGAG
TTCGTCAACTTCATCAAACAACAACACAACAACAACAACAACACAAACTAGTGAACCATA
TGTCCCACCATCTCGTAGAAACAAGATGAATAATAGTTCAGGTTCATCAAGAGACGATTA
TCCATCACCATCTGACCGTGATAATCGTGATTCACCATTCAATCGTGACCGTCGTGACGA
TGGTTACAGAGGTGGTAACAATTTTAGGGAAAATAACTCTAATAACAACAACAACAGTAG
AGATAACTACAAAAGTCCATCATTCTCAAGAAACAATAATAGTAATGGTGGTGGTAGTAG
TAGTGGTAGCGGTGGTTGGGATAATGGTCCAAGAGAACAAGGCCCACCAAGAGGTAATAG
TTACTCTTATTCACCAAATAATTCATTCTCTCGTGGTGGTAATCAAGGTGGTTATGGTAA
TAGAGGCGGAAGTGGCAGTAGTTTTGGTAXXXXXXXXXXTTTGTCTCATTTTCGTTGAAA
CTAAACGTTCTTGTGATACTCTTACCTACTTTTTAAATCAAAGAAATTTCCCAACTACCT
GTATTCATGGTGATTTAACTCAACCAGAAAGAGAAAATGCACTTCAATCTTTCCGTTCTT
TTGCAACTCCATTCTTAGTAGCAACTGATATTGCATCAAGAGGTCTCCACATCGGTAATG
TTAATTTGGTTATCAATTTCGACTTGCCTACCGACATACATATCTACGTTCATCGTATTG
GTAGAACCGGAAGAGCAGGAAAAAAAGGTTTAGCAATTTCCTTCTTCAATGAAAAGAATA
AACCAGTTGGTGCTGAACTTTTGAAATTAATGAAAGCTTCAAATCAAGATATTCCAGATT
GGTTTGAAAAGATGGTACACAATCTCCGTATGTCTAAAGGTCCATCAAACTCAAAATCAA
ATAGTCCATTCAACAAATCTTACAATAGTCATCACAATAGAGATGATAACCGTGGTGGTT
ATGGTGGTGGTGGTGGTGGTAATGGAGGTTACAGTAACAACCGTAATGATAGAAGAGAAG
ATAAATCAGATTACTCAATGCATCACCCATACTTTAGCAACAATGGTGGTTCATATAATT
AAACATTCACCTCATGTCATTCGTTTAATAAAAAATAATAAATCCATTTTAATTCAATAT
NAATTAAAATCA
sequence update 2002.10.25
Translated Amino Acid sequence 
ifihadkff*RISHFMPIGNNKDNDGTTLNISGLTISDKSSSTSSNNNTTTTTTQTSEPY
VPPSRRNKMNNSSGSSRDDYPSPSDRDNRDSPFNRDRRDDGYRGGNNFRENNSNNNNNSR
DNYKSPSFSRNNNSNGGGSSSGSGGWDNGPREQGPPRGNSYSYSPNNSFSRGGNQGGYGN
RGGSGSSFG---

---CLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDI
ASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELLKLM
KASNQDIPDWFEKMVHNLRMSKGPSNSKSNSPFNKSYNSHHNRDDNRGGYGGGGGGNGGY
SNNRNDRREDKSDYSMHHPYFSNNGGSYN*tftschsfnkk**ihfnsixiki
Translated Amino Acid sequence (All Frames) 
Frame A:
nfhprg*iflkn*sfyanwk*qr*rwnypeylrvnhl**efvnfikqqhnnnnntn**ti
cptis*kqde**frfikrrlsiti*p**s*ftiqs*ps*rwlqrw*qf*gk*l**qqqq*
r*lqksiilkkq***www***w*rwlg*wskrtrptkr**lllftk*filsww*srwlw*
*rrkwq*fw---

---fvsfslklnvlvillptf*ikeisqlpvfmvi*lnqkekmhfnlsvllqlhs**qli
lhqevstsvmliwlsistclptyistfivlvepeeqekkv*qfpssmkrinqlvlnf*n*
*klqikifqiglkrwytisvclkvhqtqnqivhstnltivitiemitvvvmvvvvvvmev
tvttvmieekinqitqcithtlatmvvhiikhsphvirliknnksiliqyxlks

Frame B:
ifihadkff*RISHFMPIGNNKDNDGTTLNISGLTISDKSSSTSSNNNTTTTTTQTSEPY
VPPSRRNKMNNSSGSSRDDYPSPSDRDNRDSPFNRDRRDDGYRGGNNFRENNSNNNNNSR
DNYKSPSFSRNNNSNGGGSSSGSGGWDNGPREQGPPRGNSYSYSPNNSFSRGGNQGGYGN
RGGSGSSFG---

---lshfr*n*tfl*ysyllfkskkfpnylysw*fnstrkrkctsifpffcnsilssn*y
cikrsphr*c*fgyqfrlayrhtylrssyw*nrksrkkrfsnfllq*ke*tswc*tfein
esfksrysrlv*kdgtqspyv*rsiklkik*siqqilq*ssq*r**pwwlwwwwww*wrl
q*qp***krr*irllnaspil*qqwwfi*lnihlmsfv**kiinpf*fnxn*n

Frame C:
fsstrinffkelvilcqleitkitmelp*isqg*pslirvrqlhqtttqqqqqhklvnhm
shhlvetr*iivqvhqetiihhhltviivihhsivtvvtmvtevvtilgkitlittttve
ittkvhhsqetiivmvvvvvvvavvgimvqenkahqevivtlihqiihslvvvikvvmvi
eaevavvlv---

---CLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDI
ASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELLKLM
KASNQDIPDWFEKMVHNLRMSKGPSNSKSNSPFNKSYNSHHNRDDNRGGYGGGGGGNGGY
SNNRNDRREDKSDYSMHHPYFSNNGGSYN*tftschsfnkk**ihfnsixiki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ404 (VHQ404Q) /CSM/VH/VHQ4-A/VHQ404Q.Seq.d/                       1689   0.0
VHP588 (VHP588Q) /CSM/VH/VHP5-D/VHP588Q.Seq.d/                       1689   0.0
VHP118 (VHP118Q) /CSM/VH/VHP1-A/VHP118Q.Seq.d/                       1689   0.0
VHI547 (VHI547Q) /CSM/VH/VHI5-B/VHI547Q.Seq.d/                        934   0.0
VHI263 (VHI263Q) /CSM/VH/VHI2-C/VHI263Q.Seq.d/                        934   0.0
CHL756 (CHL756Q) /CSM/CH/CHL7-C/CHL756Q.Seq.d/                        934   0.0
CHH489 (CHH489Q) /CSM/CH/CHH4-D/CHH489Q.Seq.d/                        934   0.0
CHF867 (CHF867Q) /CSM/CH/CHF8-C/CHF867Q.Seq.d/                        934   0.0
CHF591 (CHF591Q) /CSM/CH/CHF5-D/CHF591Q.Seq.d/                        934   0.0
AFC476 (AFC476Q) /CSM/AF/AFC4-D/AFC476Q.Seq.d/                        934   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ358087) Dictyostelium discoideum cDNA clone:dda65p14, 3' ...   726   0.0    5
(BJ446556) Dictyostelium discoideum cDNA clone:ddv63h02, 3' ...   555   0.0    3
(BJ446510) Dictyostelium discoideum cDNA clone:ddv62o21, 3' ...   555   0.0    3
(BJ445908) Dictyostelium discoideum cDNA clone:ddv61c05, 3' ...   555   0.0    3
(BJ441972) Dictyostelium discoideum cDNA clone:ddv48m11, 3' ...   555   0.0    3
(BJ441733) Dictyostelium discoideum cDNA clone:ddv47m16, 3' ...   555   0.0    3
(BJ385892) Dictyostelium discoideum cDNA clone:ddc56a18, 3' ...   555   0.0    3
(BJ382734) Dictyostelium discoideum cDNA clone:ddc45p13, 3' ...   555   0.0    3
(BJ380023) Dictyostelium discoideum cDNA clone:ddc36b24, 3' ...   555   0.0    3
(BJ379108) Dictyostelium discoideum cDNA clone:ddc33e23, 3' ...   555   0.0    3
dna update 2008.12.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QS3) RecName: Full=Probable ATP-dependent RNA helicase ddx3;...   319   2e-85
(Q6Z4K6) RecName: Full=DEAD-box ATP-dependent RNA helicase 52B; ...   161   4e-38
BT085991_1(BT085991|pid:none) Zea mays full-length cDNA clone ZM...   157   6e-37
(Q75HJ0) RecName: Full=DEAD-box ATP-dependent RNA helicase 37;  ...   157   8e-37
FN357514_12(FN357514|pid:none) Schistosoma mansoni genome sequen...   157   8e-37
EU953399_1(EU953399|pid:none) Zea mays clone 1406878 unknown mRNA.    157   1e-36
(Q2R1M8) RecName: Full=DEAD-box ATP-dependent RNA helicase 52C; ...   155   4e-36
AY062446_1(AY062446|pid:none) Arabidopsis thaliana ATP-dependent...   154   5e-36
AM048814_1(AM048814|pid:none) Platynereis dumerilii mRNA for PL1...   154   7e-36
AM444101_1(AM444101|pid:none) Vitis vinifera contig VV78X103110....   154   9e-36
protein update 2009. 7.20
PSORT 

 psg: 0.88  gvh: 0.39  alm: 0.46  top: 0.30  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.11  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHP118 is cyt
5' end seq. ID VHP118F
5' end seq. 
>VHP118F.Seq
AATTTTCATCCACGCGGATAAATTTTTTTAAAGAATTAGTCATTTTATGCCAATTGGAAA
TAACAAAGATAACGATGGAACTACCCTGAATATCTCAGGGTTAACCATCTCTGATAAGAG
TTCGTCAACTTCATCAAACAACAACACAACAACAACAACAACACAAACTAGTGAACCATA
TGTCCCACCATCTCGTAGAAACAAGATGAATAATAGTTCAGGTTCATCAAGAGACGATTA
TCCATCACCATCTGACCGTGATAATCGTGATTCACCATTCAATCGTGACCGTCGTGACGA
TGGTTACAGAGGTGGTAACAATTTTAGGGAAAATAACTCTAATAACAACAACAACAGTAG
AGATAACTACAAAAGTCCATCATTCTCAAGAAACAATAATAGTAATGGTGGTGGTAGTAG
TAGTGGTAGCGGTGGTTGGGATAATGGTCCAAGAGAACAAGGCCCACCAAGAGGTAATAG
TTACTCTTATTCACCAAATAATTCATTCTCTCGTGGTGGTAATCAAGGTGGTTATGGTAA
TAGAGGCGGAAGTGGCAGTAGTTTTGGTANNNNNNNNNN
Length of 5' end seq. 579
3' end seq. ID VHP118Z
3' end seq. 
>VHP118Z.Seq
NNNNNNNNNNTTTGTCTCATTTTCGTTGAAACTAAACGTTCTTGTGATACTCTTACCTAC
TTTTTAAATCAAAGAAATTTCCCAACTACCTGTATTCATGGTGATTTAACTCAACCAGAA
AGAGAAAATGCACTTCAATCTTTCCGTTCTTTTGCAACTCCATTCTTAGTAGCAACTGAT
ATTGCATCAAGAGGTCTCCACATCGGTAATGTTAATTTGGTTATCAATTTCGACTTGCCT
ACCGACATACATATCTACGTTCATCGTATTGGTAGAACCGGAAGAGCAGGAAAAAAAGGT
TTAGCAATTTCCTTCTTCAATGAAAAGAATAAACCAGTTGGTGCTGAACTTTTGAAATTA
ATGAAAGCTTCAAATCAAGATATTCCAGATTGGTTTGAAAAGATGGTACACAATCTCCGT
ATGTCTAAAGGTCCATCAAACTCAAAATCAAATAGTCCATTCAACAAATCTTACAATAGT
CATCACAATAGAGATGATAACCGTGGTGGTTATGGTGGTGGTGGTGGTGGTAATGGAGGT
TACAGTAACAACCGTAATGATAGAAGAGAAGATAAATCAGATTACTCAATGCATCACCCA
TACTTTAGCAACAATGGTGGTTCATATAATTAAACATTCACCTCATGTCATTCGTTTAAT
AAAAAATAATAAATCCATTTTAATTCAATATNAATTAAAATCA
Length of 3' end seq. 703
Connected seq. ID VHP118P
Connected seq. 
>VHP118P.Seq
AATTTTCATCCACGCGGATAAATTTTTTTAAAGAATTAGTCATTTTATGCCAATTGGAAA
TAACAAAGATAACGATGGAACTACCCTGAATATCTCAGGGTTAACCATCTCTGATAAGAG
TTCGTCAACTTCATCAAACAACAACACAACAACAACAACAACACAAACTAGTGAACCATA
TGTCCCACCATCTCGTAGAAACAAGATGAATAATAGTTCAGGTTCATCAAGAGACGATTA
TCCATCACCATCTGACCGTGATAATCGTGATTCACCATTCAATCGTGACCGTCGTGACGA
TGGTTACAGAGGTGGTAACAATTTTAGGGAAAATAACTCTAATAACAACAACAACAGTAG
AGATAACTACAAAAGTCCATCATTCTCAAGAAACAATAATAGTAATGGTGGTGGTAGTAG
TAGTGGTAGCGGTGGTTGGGATAATGGTCCAAGAGAACAAGGCCCACCAAGAGGTAATAG
TTACTCTTATTCACCAAATAATTCATTCTCTCGTGGTGGTAATCAAGGTGGTTATGGTAA
TAGAGGCGGAAGTGGCAGTAGTTTTGGTA----------TTTGTCTCATTTTCGTTGAAA
CTAAACGTTCTTGTGATACTCTTACCTACTTTTTAAATCAAAGAAATTTCCCAACTACCT
GTATTCATGGTGATTTAACTCAACCAGAAAGAGAAAATGCACTTCAATCTTTCCGTTCTT
TTGCAACTCCATTCTTAGTAGCAACTGATATTGCATCAAGAGGTCTCCACATCGGTAATG
TTAATTTGGTTATCAATTTCGACTTGCCTACCGACATACATATCTACGTTCATCGTATTG
GTAGAACCGGAAGAGCAGGAAAAAAAGGTTTAGCAATTTCCTTCTTCAATGAAAAGAATA
AACCAGTTGGTGCTGAACTTTTGAAATTAATGAAAGCTTCAAATCAAGATATTCCAGATT
GGTTTGAAAAGATGGTACACAATCTCCGTATGTCTAAAGGTCCATCAAACTCAAAATCAA
ATAGTCCATTCAACAAATCTTACAATAGTCATCACAATAGAGATGATAACCGTGGTGGTT
ATGGTGGTGGTGGTGGTGGTAATGGAGGTTACAGTAACAACCGTAATGATAGAAGAGAAG
ATAAATCAGATTACTCAATGCATCACCCATACTTTAGCAACAATGGTGGTTCATATAATT
AAACATTCACCTCATGTCATTCGTTTAATAAAAAATAATAAATCCATTTTAATTCAATAT
NAATTAAAATCA
Length of connected seq. 1262
Full length Seq ID -
Full length Seq. -
Length of full length seq. -