VHP117
Library VH
(Link to library)
Clone ID VHP117
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12100-1|Contig-U13787-1
Original site URL
Representative seq. ID VHP117P
(Link to Original site)
Representative DNA sequence
>VHP117 (VHP117Q) /CSM/VH/VHP1-A/VHP117Q.Seq.d/
ATTTTTTGTACATAAAACCGTGTTTATATTATCTTCATCTATATTCGTATTTAAAATATT
TTATATACCAATAGATTGATATCAATATTATTTATTTTATTTTATTTTATTTTATTTTAT
TTTATTTTATTTTATTTTATTTTTAATTACCACTATTTTCGAAAAAAAAAAATAAAAAAA
ATAAAAAAAAAAATAAAAAAXXXXXXXXXXGCAAGGTATTGGATATTCATGTACATCTTT
ATTATTCAAAATCAATTATCAATCAAAGTAAAGTTTCAATCACTCATTCAATTGCAACTC
TACTTCAAACAAATACACCAAACATTTTGGATAAGATTTTCACTGGTATCAGTCATCGTA
GTAAAACCGTATCCTCATTTTGTTTGTTCATTCTATTGCAATTGATGAGTAATCAAGAGG
GTTTGGCTGTACATAATTGTTTGAAAGCAGAGAATTCCAATCTTTATGGTCGTGTAAAGA
AGATTTGTGATAGTAAATTAAAACATGTTCAATTTGCTGCAAGAAGATTATTCTCTGTAT
TTGCCAAAGCTCCTTGGGTTGATTTCGTCTATAAAGAGTATAATAAAGGATCCAGAGCAA
TGTTTATCAGTTTGTGATTTCATTGGTAATGACGAGAAGAAACCTTCGTCATTACTTTTG
GAAATGTTATTGGAATTCTTTACAACATCATTAGATCGTACGATTGAGGCTGCAACTGCA
TCATTACCAATTTCAAACACTTCTTCATCCTCCTCACCATCTTCATTATCATCGTCGATG
GGTGGTGGTAGTGGTGGCAGTATGATGGGTGGTGGCAGTGGCGGTGGTGGCAGTATGATG
GGCGGCAGTGGTAGTAGTATGGGCAGTCTAATGAATAACACACCACCATTATCACCAGTT
GGTTCACCACCAGTCTCAATGTCAAGTAGCTTTGGTGGTAACACTCCAAATATAACAATG
GTATTAAAAATAAATTTAGTTTTGTATGGATGGTGCATTATTCCATCATTTATAGGCTCA
TATC
sequence update 2002.10.25
Translated Amino Acid sequence
ifct*nrvyiifiyiri*NILYTNRLISILFILFYFILFYFILFYFIFNYHYFRKKKIKK
IKKKIK---

---KVLDIHVHLYYSKSIINQSKVSITHSIATLLQTNTPNILDKIFTGISHRSKTVSSFC
LFILLQLMSNQEGLAVHNCLKAENSNLYGRVKKICDSKLKHVQFAARRLFSVFAKAPWVD
FVYKEYNKGSRAMFISL*fhw**reetfvitfgnvigilyniirsyd*gcnciitnfkhf
filltifiiivdgww*wwqydgwwqwrwwqydgrqw**ygqsne*httiitswfttslnv
k*lww*hskynngiknkfsfvwmvhysiiyrli


Translated Amino Acid sequence (All Frames)
Frame A:
ifct*nrvyiifiyiri*NILYTNRLISILFILFYFILFYFILFYFIFNYHYFRKKKIKK
IKKKIK---

---arywifmyifiiqnqlsikvkfqsliqlqlyfkqihqtfwirfslvsvivvkpyphf
vcsfycn**vikrvwlyiiv*kqripifmvv*rrfvivn*nmfnllqedyslylpkllgl
issiksiikdpeqclsvcdfigndekkpsslllemlleffttsldrtieaataslpisnt
ssssspsslsssmgggsggsmmgggsggggsmmggsgssmgslmnntpplspvgsppvsm
sssfggntpnitmvlkinlvlygwciipsfigsy

Frame B:
ffvhktvfilsssifvfkifyipid*yqyylfyfilfyfilfyfilflittifekkk*kk
*kkk*k---

---qgigysctsllfkinyqsk*sfnhsfncnstsnkytkhfg*dfhwyqss**nrilil
fvhsiaide*srgfgct*lfesrefqslwsckedl***iktcsicckkiilcicqsslg*
frl*rv**riqsnvyqfvislvmtrrnlrhyfwkcywnslqhh*ivrlrlqlhhyqfqtl
lhpphhlhyhrrwvvvvvav*wvvavavvav*waavvvvwav**ithhhyhqlvhhqsqc
qvalvvtlqi*qwy*k*i*fcmdgalfhhl*ahi

Frame C:
flyikpclyylhlysylkyfiyq*idiniiyfilfyfilfyfilfyf*lplfskkknkkn
kkknkk---

---KVLDIHVHLYYSKSIINQSKVSITHSIATLLQTNTPNILDKIFTGISHRSKTVSSFC
LFILLQLMSNQEGLAVHNCLKAENSNLYGRVKKICDSKLKHVQFAARRLFSVFAKAPWVD
FVYKEYNKGSRAMFISL*fhw**reetfvitfgnvigilyniirsyd*gcnciitnfkhf
filltifiiivdgww*wwqydgwwqwrwwqydgrqw**ygqsne*httiitswfttslnv
k*lww*hskynngiknkfsfvwmvhysiiyrli

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP117 (VHP117Q) /CSM/VH/VHP1-A/VHP117Q.Seq.d/ 1122 0.0
SLE166 (SLE166Q) /CSM/SL/SLE1-C/SLE166Q.Seq.d/ 567 e-160
VFF741 (VFF741Q) /CSM/VF/VFF7-B/VFF741Q.Seq.d/ 293 3e-78
VHJ378 (VHJ378Q) /CSM/VH/VHJ3-D/VHJ378Q.Seq.d/ 234 2e-60
VHE159 (VHE159Q) /CSM/VH/VHE1-C/VHE159Q.Seq.d/ 170 3e-41
SSB808 (SSB808Q) /CSM/SS/SSB8-A/SSB808Q.Seq.d/ 98 3e-19
VHN766 (VHN766Q) /CSM/VH/VHN7-C/VHN766Q.Seq.d/ 40 0.065
SSM476 (SSM476Q) /CSM/SS/SSM4-D/SSM476Q.Seq.d/ 38 0.26
SSC334 (SSC334Q) /CSM/SS/SSC3-B/SSC334Q.Seq.d/ 38 0.26
SLE551 (SLE551Q) /CSM/SL/SLE5-C/SLE551Q.Seq.d/ 38 0.26

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ445899) Dictyostelium discoideum cDNA clone:ddv61a05, 3' ... 1122 0.0 1
(AU061418) Dictyostelium discoideum slug cDNA, clone SLE166. 565 e-156 1
(BJ410364) Dictyostelium discoideum cDNA clone:ddv12b11, 5' ... 293 7e-75 1
(BJ442446) Dictyostelium discoideum cDNA clone:ddv49l19, 3' ... 149 5e-55 3
(BJ439135) Dictyostelium discoideum cDNA clone:ddv39e15, 3' ... 86 3e-36 3
(BJ427011) Dictyostelium discoideum cDNA clone:ddv61a05, 5' ... 78 1e-12 2
(AL121781) Human DNA sequence from clone RP5-1164C1 on chrom... 58 7e-04 1
(AC021974) Homo sapiens chromosome 20 clone RP11-467K14, WOR... 58 7e-04 1
(AQ036264) CIT-HSP-2331M9.TF CIT-HSP Homo sapiens genomic cl... 58 7e-04 1
(CU695339) Brassica rapa subsp. pekinensis clone KBrH055E17,... 44 0.023 2
dna update 2008.12.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000448_1483(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 37 1.1

protein update 2009. 3.17
PSORT

psg: 0.99 gvh: 0.34 alm: 0.16 top: 1.03 tms: 0.07 mit: 0.38 mip: 0.16
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.06 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

40.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: mitochondrial
8.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VHP117 is nuc

5' end seq. ID VHP117F
5' end seq.
>VHP117F.Seq
ATTTTTTGTACATAAAACCGTGTTTATATTATCTTCATCTATATTCGTATTTAAAATATT
TTATATACCAATAGATTGATATCAATATTATTTATTTTATTTTATTTTATTTTATTTTAT
TTTATTTTATTTTATTTTATTTTTAATTACCACTATTTTCGAAAAAAAAAAATAAAAAAA
ATAAAAAAAAAAATAAAAAANNNNNNNNNN
Length of 5' end seq. 210
3' end seq. ID VHP117Z
3' end seq.
>VHP117Z.Seq
NNNNNNNNNNGCAAGGTATTGGATATTCATGTACATCTTTATTATTCAAAATCAATTATC
AATCAAAGTAAAGTTTCAATCACTCATTCAATTGCAACTCTACTTCAAACAAATACACCA
AACATTTTGGATAAGATTTTCACTGGTATCAGTCATCGTAGTAAAACCGTATCCTCATTT
TGTTTGTTCATTCTATTGCAATTGATGAGTAATCAAGAGGGTTTGGCTGTACATAATTGT
TTGAAAGCAGAGAATTCCAATCTTTATGGTCGTGTAAAGAAGATTTGTGATAGTAAATTA
AAACATGTTCAATTTGCTGCAAGAAGATTATTCTCTGTATTTGCCAAAGCTCCTTGGGTT
GATTTCGTCTATAAAGAGTATAATAAAGGATCCAGAGCAATGTTTATCAGTTTGTGATTT
CATTGGTAATGACGAGAAGAAACCTTCGTCATTACTTTTGGAAATGTTATTGGAATTCTT
TACAACATCATTAGATCGTACGATTGAGGCTGCAACTGCATCATTACCAATTTCAAACAC
TTCTTCATCCTCCTCACCATCTTCATTATCATCGTCGATGGGTGGTGGTAGTGGTGGCAG
TATGATGGGTGGTGGCAGTGGCGGTGGTGGCAGTATGATGGGCGGCAGTGGTAGTAGTAT
GGGCAGTCTAATGAATAACACACCACCATTATCACCAGTTGGTTCACCACCAGTCTCAAT
GTCAAGTAGCTTTGGTGGTAACACTCCAAATATAACAATGGTATTAAAAATAAATTTAGT
TTTGTATGGATGGTGCATTATTCCATCATTTATAGGCTCATATC
Length of 3' end seq. 824
Connected seq. ID VHP117P
Connected seq.
>VHP117P.Seq
ATTTTTTGTACATAAAACCGTGTTTATATTATCTTCATCTATATTCGTATTTAAAATATT
TTATATACCAATAGATTGATATCAATATTATTTATTTTATTTTATTTTATTTTATTTTAT
TTTATTTTATTTTATTTTATTTTTAATTACCACTATTTTCGAAAAAAAAAAATAAAAAAA
ATAAAAAAAAAAATAAAAAA----------GCAAGGTATTGGATATTCATGTACATCTTT
ATTATTCAAAATCAATTATCAATCAAAGTAAAGTTTCAATCACTCATTCAATTGCAACTC
TACTTCAAACAAATACACCAAACATTTTGGATAAGATTTTCACTGGTATCAGTCATCGTA
GTAAAACCGTATCCTCATTTTGTTTGTTCATTCTATTGCAATTGATGAGTAATCAAGAGG
GTTTGGCTGTACATAATTGTTTGAAAGCAGAGAATTCCAATCTTTATGGTCGTGTAAAGA
AGATTTGTGATAGTAAATTAAAACATGTTCAATTTGCTGCAAGAAGATTATTCTCTGTAT
TTGCCAAAGCTCCTTGGGTTGATTTCGTCTATAAAGAGTATAATAAAGGATCCAGAGCAA
TGTTTATCAGTTTGTGATTTCATTGGTAATGACGAGAAGAAACCTTCGTCATTACTTTTG
GAAATGTTATTGGAATTCTTTACAACATCATTAGATCGTACGATTGAGGCTGCAACTGCA
TCATTACCAATTTCAAACACTTCTTCATCCTCCTCACCATCTTCATTATCATCGTCGATG
GGTGGTGGTAGTGGTGGCAGTATGATGGGTGGTGGCAGTGGCGGTGGTGGCAGTATGATG
GGCGGCAGTGGTAGTAGTATGGGCAGTCTAATGAATAACACACCACCATTATCACCAGTT
GGTTCACCACCAGTCTCAATGTCAAGTAGCTTTGGTGGTAACACTCCAAATATAACAATG
GTATTAAAAATAAATTTAGTTTTGTATGGATGGTGCATTATTCCATCATTTATAGGCTCA
TATC
Length of connected seq. 1014
Full length Seq ID -
Full length Seq. -
Length of full length seq. -