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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP113
Library VH
(Link to library)
Clone ID VHP113
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16433-1
Original site URL
Representative seq. ID VHP113P
(Link to Original site)
Representative DNA sequence 
>VHP113 (VHP113Q) /CSM/VH/VHP1-A/VHP113Q.Seq.d/
ATCTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATTTATTAAATTATTATTT
ATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATTCTTGTAT
AAATAAAAAAAAAAXXXXXXXXXXGCTCCAGTCGATCCAGTTATGGTCGATAATGGTGAT
GGTACATATGATGTTGAATTTGAACCAAAAGAAGCCGGTGACTATGTTATCAATCTCACT
TTAGATGGTGACAACGTCAATGGTTTCCCAAAGACTGTTACCGTTAAACCAGCCCCATCC
GCTGAACACTCTTATGCTGAAGGTGAAGGTTTAGTCAAAGTATTTGATAATGCCCCAGCT
GAATTCACTATTTTCGCCGTTGACACTAAAGGTGTTGCTCGTACCGATGGTGGTGATCCA
TTTGAAGTCGCTATCAATGGTCCAGATGGTTTAGTCGTTGATGCCAAAGTTACCGATAAC
AATGACGGTACTTATGGTGTTGTCTATGATGCCCCAGTTGAAGGTAACTACAATGTTAAT
GTCACCCTCCGTGGTAATCCAATCAAAAATATGCCAATCGATGTCAAATGCATTGAAGGT
GCCAATGGTGAAGATTCATCATTCGGTTCATTCACTTTTACCGTCGCTGCTAAAAATAAG
AAAGGTGAAGTTAAAACCTATGGTGGTGATAAATTTGAAGTCTCTATCACTGGTCCAGCT
GAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
syhfylfiy*IIIYLLNYYLLSCVNYLPINFNILYIYSCINKKK---

---APVDPVMVDNGDGTYDVEFEPKEAGDYVINLTLDGDNVNGFPKTVTVKPAPSAEHSY
AEGEGLVKVFDNAPAEFTIFAVDTKGVARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTY
GVVYDAPVEGNYNVNVTLRGNPIKNMPIDVKCIEGANGEDSSFGSFTFTVAAKNKKGEVK
TYGGDKFEVSITGPAE
Translated Amino Acid sequence (All Frames) 
Frame A:
ilpflfiyllnyylfikllfielcklpsnkf*yfvyiflyk*kk---

---APVDPVMVDNGDGTYDVEFEPKEAGDYVINLTLDGDNVNGFPKTVTVKPAPSAEHSY
AEGEGLVKVFDNAPAEFTIFAVDTKGVARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTY
GVVYDAPVEGNYNVNVTLRGNPIKNMPIDVKCIEGANGEDSSFGSFTFTVAAKNKKGEVK
TYGGDKFEVSITGPAE

Frame B:
syhfylfiy*IIIYLLNYYLLSCVNYLPINFNILYIYSCINKKK---

---lqsiqlwsimvmvhmmlnlnqkkpvtmlsisl*mvttsmvsqrllplnqphplntlm
lkvkv*skylimpqlnslfspltlkvllvpmvvihlkslsmvqmv*slmpklpitmtvlm
vlsmmpqlkvttmlmspsvviqskicqsmsnalkvpmvkihhsvhsllpsllkirkvklk
pmvvinlkslslvqlk

Frame C:
ltifiylfikllfiy*iiiy*vv*ttfq*ilifciyilv*ikkk---

---ssrssygr*w*wyi*c*i*tkrsr*lcyqshfrw*qrqwfpkdcyr*tspir*tllc
*r*rfsqsi**cps*ihyfrr*h*rccsyrww*si*sryqwsrwfsr*cqsyr*q*rylw
ccl*cps*r*lqc*chppw*snqkyanrcqmh*rcqw*rfiirfihfyrrc*k*er*s*n
lww**i*slyhwss*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP113 (VHP113Q) /CSM/VH/VHP1-A/VHP113Q.Seq.d/                       1150   0.0
SFD611 (SFD611Q) /CSM/SF/SFD6-A/SFD611Q.Seq.d/                       1150   0.0
AHJ472 (AHJ472Q) /CSM/AH/AHJ4-C/AHJ472Q.Seq.d/                       1150   0.0
AHH820 (AHH820Q) /CSM/AH/AHH8-A/AHH820Q.Seq.d/                       1150   0.0
AHF883 (AHF883Q) /CSM/AH/AHF8-D/AHF883Q.Seq.d/                       1148   0.0
SHK588 (SHK588Q) /CSM/SH/SHK5-D/SHK588Q.Seq.d/                       1144   0.0
CHG643 (CHG643Q) /CSM/CH/CHG6-B/CHG643Q.Seq.d/                       1144   0.0
VHP494 (VHP494Q) /CSM/VH/VHP4-D/VHP494Q.Seq.d/                       1142   0.0
SHD281 (SHD281Q) /CSM/SH/SHD2-D/SHD281Q.Seq.d/                       1142   0.0
SHC418 (SHC418Q) /CSM/SH/SHC4-A/SHC418Q.Seq.d/                       1142   0.0
own update 2004. 5.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X15430) Dictyostelium discoideum mRNA for gelation factor.      1148   0.0    1
(BJ445932) Dictyostelium discoideum cDNA clone:ddv61i03, 3' ...  1148   0.0    1
(BJ353316) Dictyostelium discoideum cDNA clone:dda49p18, 3' ...  1148   0.0    1
(BJ352235) Dictyostelium discoideum cDNA clone:dda46h06, 3' ...  1148   0.0    1
(BJ351325) Dictyostelium discoideum cDNA clone:dda42f22, 3' ...  1148   0.0    1
(BJ408474) Dictyostelium discoideum cDNA clone:dds45o21, 3' ...  1144   0.0    1
(BJ379572) Dictyostelium discoideum cDNA clone:ddc35e12, 3' ...  1144   0.0    1
(BJ405143) Dictyostelium discoideum cDNA clone:dds30a22, 3' ...  1142   0.0    1
(BJ385719) Dictyostelium discoideum cDNA clone:ddc55m23, 3' ...  1142   0.0    1
(BJ446180) Dictyostelium discoideum cDNA clone:ddv61l24, 3' ...  1140   0.0    1
dna update 2008.12.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080395_1(AF080395|pid:none) Entamoeba histolytica actin bindin...   100   6e-20
U70560_1(U70560|pid:none) Entamoeba histolytica actin binding pr...    97   4e-19
AB056474_1(AB056474|pid:none) Gallus gallus mRNA for filamin, co...    87   4e-16
AK131179_1(AK131179|pid:none) Mus musculus mRNA for mFLJ00343 pr...    82   2e-14
BC151024_1(BC151024|pid:none) Mus musculus filamin, alpha, mRNA ...    82   2e-14
AL807376_2(AL807376|pid:none) Mouse DNA sequence from clone RP23...    82   2e-14
FJ416060_1(FJ416060|pid:none) Rattus norvegicus filamin alpha (F...    82   2e-14
BX664723_1(BX664723|pid:none) Human DNA sequence from clone WI2-...    82   2e-14
AL807376_1(AL807376|pid:none) Mouse DNA sequence from clone RP23...    82   2e-14
AL807376_3(AL807376|pid:none) Mouse DNA sequence from clone RP23...    82   2e-14
protein update 2009. 7.20
PSORT 

 psg: 0.89  gvh: 0.39  alm: 0.36  top: 0.47  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHP113 is cyt
5' end seq. ID VHP113F
5' end seq. 
>VHP113F.Seq
ATCTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATTTATTAAATTATTATTT
ATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATTCTTGTAT
AAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 144
3' end seq. ID VHP113Z
3' end seq. 
>VHP113Z.Seq
NNNNNNNNNNGCTCCAGTCGATCCAGTTATGGTCGATAATGGTGATGGTACATATGATGT
TGAATTTGAACCAAAAGAAGCCGGTGACTATGTTATCAATCTCACTTTAGATGGTGACAA
CGTCAATGGTTTCCCAAAGACTGTTACCGTTAAACCAGCCCCATCCGCTGAACACTCTTA
TGCTGAAGGTGAAGGTTTAGTCAAAGTATTTGATAATGCCCCAGCTGAATTCACTATTTT
CGCCGTTGACACTAAAGGTGTTGCTCGTACCGATGGTGGTGATCCATTTGAAGTCGCTAT
CAATGGTCCAGATGGTTTAGTCGTTGATGCCAAAGTTACCGATAACAATGACGGTACTTA
TGGTGTTGTCTATGATGCCCCAGTTGAAGGTAACTACAATGTTAATGTCACCCTCCGTGG
TAATCCAATCAAAAATATGCCAATCGATGTCAAATGCATTGAAGGTGCCAATGGTGAAGA
TTCATCATTCGGTTCATTCACTTTTACCGTCGCTGCTAAAAATAAGAAAGGTGAAGTTAA
AACCTATGGTGGTGATAAATTTGAAGTCTCTATCACTGGTCCAGCTGAAG
Length of 3' end seq. 590
Connected seq. ID VHP113P
Connected seq. 
>VHP113P.Seq
ATCTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATTTATTAAATTATTATTT
ATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATTCTTGTAT
AAATAAAAAAAAAA----------GCTCCAGTCGATCCAGTTATGGTCGATAATGGTGAT
GGTACATATGATGTTGAATTTGAACCAAAAGAAGCCGGTGACTATGTTATCAATCTCACT
TTAGATGGTGACAACGTCAATGGTTTCCCAAAGACTGTTACCGTTAAACCAGCCCCATCC
GCTGAACACTCTTATGCTGAAGGTGAAGGTTTAGTCAAAGTATTTGATAATGCCCCAGCT
GAATTCACTATTTTCGCCGTTGACACTAAAGGTGTTGCTCGTACCGATGGTGGTGATCCA
TTTGAAGTCGCTATCAATGGTCCAGATGGTTTAGTCGTTGATGCCAAAGTTACCGATAAC
AATGACGGTACTTATGGTGTTGTCTATGATGCCCCAGTTGAAGGTAACTACAATGTTAAT
GTCACCCTCCGTGGTAATCCAATCAAAAATATGCCAATCGATGTCAAATGCATTGAAGGT
GCCAATGGTGAAGATTCATCATTCGGTTCATTCACTTTTACCGTCGCTGCTAAAAATAAG
AAAGGTGAAGTTAAAACCTATGGTGGTGATAAATTTGAAGTCTCTATCACTGGTCCAGCT
GAAG
Length of connected seq. 714
Full length Seq ID -
Full length Seq. -
Length of full length seq. -