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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHO891
Library VH
(Link to library)
Clone ID VHO891
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15173-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHO891 (VHO891Q) /CSM/VH/VHO8-D/VHO891Q.Seq.d/
XXXXXXXXXXAATTATCTATGGTGATGTTAATAGACCAGTTCCAATGACTCTTGAATATA
CCACATTTGCTCAAACCCTCACAACCAAACCAATGAAAGGTATGTTAACTGGTCCAGTTA
CAATCCTTCAATGGTCATTTGTTCGTGATGACCAACCACGTTCTGAAACTTGTTTCCAAA
TTGGTTTAGCCATTCGTGATGAAGTTACCGATTTAGAAAATAAAGGTATTGCTTGTATTC
AAATCGATGAACCAGCAATTCGTGAAGGTCTTCCATTGCGTTTATCCGATTGGAATCAAT
ATCTTAAATGGGCAATTGACTCTTTCTTATTATCAAGCACTGGTGTTAAAGATAGTACTC
AAATTCACTCCCATATGTGTTATTCAGATTTCAATGATATCTTTGAATCAATTCAAAGAA
TGGATACTGATGTTTTAACTATTGAAAATTCAAAATCTGATCTCAAACTCTTAAAAGCTT
TTGAAAAATATGGTTACACAAATGAAATTGGTCCAGGTCTCTATGATATTCACTCTCCAA
GAATTCCATCTGTTGAAGATATGAAAGATCGTGTTGAACAAATGCTTAAATATCTCTCAA
CTAATCTCTTATGGATTAATCCAGATTGTGGTCTTAAAACTAGAGAACCAGAAACTACAA
GATTAGCTTTAATTAATATGGTTAAAGTTGCTAAACAATTTAGAGAAATTTATGCTAATA
AAGAATAAAAATATAAACTAATAAATAAAATAAAATAAAAATAAAAAAAATA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---IIYGDVNRPVPMTLEYTTFAQTLTTKPMKGMLTGPVTILQWSFVRDDQPRSETCFQI
GLAIRDEVTDLENKGIACIQIDEPAIREGLPLRLSDWNQYLKWAIDSFLLSSTGVKDSTQ
IHSHMCYSDFNDIFESIQRMDTDVLTIENSKSDLKLLKAFEKYGYTNEIGPGLYDIHSPR
IPSVEDMKDRVEQMLKYLSTNLLWINPDCGLKTREPETTRLALINMVKVAKQFREIYANK
E*kyklinkik*k*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
---IIYGDVNRPVPMTLEYTTFAQTLTTKPMKGMLTGPVTILQWSFVRDDQPRSETCFQI
GLAIRDEVTDLENKGIACIQIDEPAIREGLPLRLSDWNQYLKWAIDSFLLSSTGVKDSTQ
IHSHMCYSDFNDIFESIQRMDTDVLTIENSKSDLKLLKAFEKYGYTNEIGPGLYDIHSPR
IPSVEDMKDRVEQMLKYLSTNLLWINPDCGLKTREPETTRLALINMVKVAKQFREIYANK
E*kyklinkik*k*kk


Frame B:
---lsmvmlidqfq*llniphllkpsqpnq*kvc*lvqlqsfnghlfvmtnhvlklvskl
v*pfvmklpi*kikvllvfksmnqqfvkvfhcvypiginilngqltlsyyqalvlkivlk
ftpicviqismislnqfkewilmf*llkiqnlisns*kllknmvtqmklvqvsmiftlqe
fhllki*kivlnkclnisqlisygliqivvlklenqklqd*l*liwlkllnnlekfmlik
nknin**ik*nknkkn


Frame C:
---ylw*c**tssnds*iyhicsnphnqtneryvnwssynpsmvics**pttf*nlfpnw
fshs**syrfrk*ryclysnr*tsns*rssiafirlesis*mgn*lfliikhwc*r*ysn
slpyvlfrfq*yl*inskngy*cfny*kfki*sqtlksf*kiwlhk*nwsrsl*yslskn
sic*ryersc*tna*isln*slmd*srlws*n*rtrnykisfn*yg*sc*ti*rnlc**r
iki*tnk*nkikikki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO891 (VHO891Q) /CSM/VH/VHO8-D/VHO891Q.Seq.d/                       1398   0.0
FCL-AB22 (FCL-AB22Q) /CSM/FCL/FCL-AB/FCL-AB22Q.Seq.d/                1398   0.0
VHK882 (VHK882Q) /CSM/VH/VHK8-D/VHK882Q.Seq.d/                       1384   0.0
VHH834 (VHH834Q) /CSM/VH/VHH8-B/VHH834Q.Seq.d/                       1362   0.0
VHL170 (VHL170Q) /CSM/VH/VHL1-C/VHL170Q.Seq.d/                       1310   0.0
VHO802 (VHO802Q) /CSM/VH/VHO8-A/VHO802Q.Seq.d/                       1285   0.0
VHO408 (VHO408Q) /CSM/VH/VHO4-A/VHO408Q.Seq.d/                       1255   0.0
VHO272 (VHO272Q) /CSM/VH/VHO2-C/VHO272Q.Seq.d/                       1031   0.0
FC-BB06 (FC-BB06Q) /CSM/FC/FC-BB/FC-BB06Q.Seq.d/                      922   0.0
FC-BH12 (FC-BH12Q) /CSM/FC/FC-BH/FC-BH12Q.Seq.d/                      910   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL388059|AL388059.1 Medicago truncatula EST MtBC46D04R1 : T7 end of clone MtBC46D04 of Medicago truncatula (barrel medic).    74   3e-17  2
AF220054|AF220054.1 Coffea arabica methionine synthase mRNA, partial cds.    58   9e-10  2
AL382920|AL382920.1 Medicago truncatula EST MtBC10G03R1 : T7 end of clone MtBC10G03 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    74   3e-09  1
AL408137|AL408137.1 T7 end of clone AV0AA006G07 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    46   4e-09  4
AE014016|AE014016.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 1 of 2 of the complete genome.    40   3e-08  9
AL399531|AL399531.1 T3 end of clone AS0AA015G01 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    36   2e-06  4
CA083969|CA083969.1 SCEPAM2056G04.g AM2 Saccharum officinarum cDNA clone SCEPAM2056G04 5', mRNA sequence.    52   9e-06  2
AW329463|AW329463.2 N200703e rootphos(-) Medicago truncatula cDNA clone MHRP-20D7, mRNA sequence.    44   3e-05  2
U32843|U32843.1 Haemophilus influenzae Rd section 158 of 163 of the complete genome.    42   2e-04  4
CA992179|CA992179.1 HC0668 GIBCOBRL CAT. NO. 19643-014 Brassica rapa subsp. pekinensis cDNA, mRNA sequence.    58   2e-04  1
dna update 2004. 3.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54X49) RecName: Full=5-methyltetrahydropteroyltriglutamate--ho...   479   e-134
(Q2KYF3) RecName: Full=5-methyltetrahydropteroyltriglutamate--ho...   308   2e-82
(Q7W791) RecName: Full=5-methyltetrahydropteroyltriglutamate--ho...   304   2e-81
BX640431_54(BX640431|pid:none) Bordetella parapertussis strain 1...   304   2e-81
(Q7VVU3) RecName: Full=5-methyltetrahydropteroyltriglutamate--ho...   304   2e-81
(A9N9C7) RecName: Full=5-methyltetrahydropteroyltriglutamate--ho...   303   4e-81
(B6J3R8) RecName: Full=5-methyltetrahydropteroyltriglutamate--ho...   303   4e-81
(Q6N765) RecName: Full=5-methyltetrahydropteroyltriglutamate--ho...   303   4e-81
(A9KDA0) RecName: Full=5-methyltetrahydropteroyltriglutamate--ho...   303   4e-81
(Q0VR89) RecName: Full=5-methyltetrahydropteroyltriglutamate--ho...   303   4e-81
protein update 2009. 7.19
PSORT 

 psg: 0.76  gvh: 0.40  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for VHO891 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHO891Z
3' end seq. 
>VHO891Z.Seq
NNNNNNNNNNAATTATCTATGGTGATGTTAATAGACCAGTTCCAATGACTCTTGAATATA
CCACATTTGCTCAAACCCTCACAACCAAACCAATGAAAGGTATGTTAACTGGTCCAGTTA
CAATCCTTCAATGGTCATTTGTTCGTGATGACCAACCACGTTCTGAAACTTGTTTCCAAA
TTGGTTTAGCCATTCGTGATGAAGTTACCGATTTAGAAAATAAAGGTATTGCTTGTATTC
AAATCGATGAACCAGCAATTCGTGAAGGTCTTCCATTGCGTTTATCCGATTGGAATCAAT
ATCTTAAATGGGCAATTGACTCTTTCTTATTATCAAGCACTGGTGTTAAAGATAGTACTC
AAATTCACTCCCATATGTGTTATTCAGATTTCAATGATATCTTTGAATCAATTCAAAGAA
TGGATACTGATGTTTTAACTATTGAAAATTCAAAATCTGATCTCAAACTCTTAAAAGCTT
TTGAAAAATATGGTTACACAAATGAAATTGGTCCAGGTCTCTATGATATTCACTCTCCAA
GAATTCCATCTGTTGAAGATATGAAAGATCGTGTTGAACAAATGCTTAAATATCTCTCAA
CTAATCTCTTATGGATTAATCCAGATTGTGGTCTTAAAACTAGAGAACCAGAAACTACAA
GATTAGCTTTAATTAATATGGTTAAAGTTGCTAAACAATTTAGAGAAATTTATGCTAATA
AAGAATAAAAATATAAACTAATAAATAAAATAAAATAAAAATAAAAAAAATA
Length of 3' end seq. 772
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -