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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHO845
Library VH
(Link to library)
Clone ID VHO845
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16579-1
Original site URL
Representative seq. ID VHO845P
(Link to Original site)
Representative DNA sequence 
>VHO845 (VHO845Q) /CSM/VH/VHO8-B/VHO845Q.Seq.d/
TTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGAA
TGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTTA
TCTTTTCTTGTTAACATTGTCTTGGGGTCCTCCGAATCAGGTCAACTGGAGACGAGGATT
CATCGCACAATGGAAGAGCACAGTCCTTTGGATTGGGTCTCGCATCCGCTAAATGGTCCT
TGAAAACCGGATTATGGTATTTAATCCTATTTGGTGTTCGTACCAATAACCACATCAGGT
CTCCAAGGTGAATAGCCTCTGGTCAAATGTATTAATGTAGATAAGGGAAGTCGGCAAAAC
CGATCTGTAACTTCGGGATAAGGATTGGCTCTAAAGGCTGGTGGAGTGGACATATTGGAG
TTTGCTATTTGTTTTTTACTTTTAGGATGGGCAACTGTTTTGAAGGTTTAAGATGGGTGG
TAATTCTTTCCAATGTGAGGGCTTGCTCGTTCTGCTTTACGATTAACAGCTXXXXXXXXX
XGTAAATTTTAATTTANATCCTCGTTCCGNTCAACTTTTNGATTGTAGACGACTATCAAA
TGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCA
TTAGTTTTTANAATCAAACCCTCATTTCAATGAATAGTCGCCATCNCTTTATTTAGNGCA
ANACATATTCATACTTNGAAATATTTTCAAAACTAAAAAACTTTGTTGTTGTTTGGTGAT
GTTGTTGAAAAANGGAGCTNTTTTTATTTTTACACATNTCAAACTCAACTGTTTATTTTA
TTTACGCAACCTTAAAAAAAAAAACACAGAATGGGTAAAGTACATGGTGGTTTGAATCGT
GCTGGTAAAGTCAGAAACGCTACTCCAAAGAAAGATAAGGAAGAAAAAAGAAAACCAAAG
GTTGGTCGTGCTAAAAAGAGAATGATCTTCAACAGACGTAACGTCGCCGCCGTCGCTGGT
TTCGGTAAAAAGAAGGGTTACAACACTCAAAACGTCCCAACCGTTGCTTAAATTTATTAA
TATACAATTTATAATTAAAATAATAAATTTTNAAGAAATATTTAACTTTTTTTTAAAAAT
AAA
sequence update 2002.10.25
Translated Amino Acid sequence 
ntsdfigrkgsglkflhhrmgy*gnrs*sgtsiggrgrvifsc*hclgvlrirstgdeds
shngraqsfglglasakwslktglwylilfgvrtnnhirspr*iasgqmy*cr*GKSAKP
ICNFGIRIGSKGWWSGHIGVCYLFFTFRMGNCFEGLRWVVILSNVRACSFCFTINS---

---VNFNLXPRSXQLXDCRRLSNELGAVSFRVAFSYEGLRLFH*flxsnphfne*spsly
lxqxifilxnifktkklccclvmllkxgaxfifthxklnclfylrnlkkkntewvkymvv
*ivlvksetllqrkirkkkenqrlvvlkre*sstdvtsppslvsvkrrvttlktsqpllk
finiqfiikiinfxeifnfflki
Translated Amino Acid sequence (All Frames) 
Frame A:
ltlvtl*aereag*nsctiewdirvtdrnpghqlaveeelsflvnivlgssesgqletri
hrtmeehspldwvshplngp*kpdygi*sylvfvpittsglqge*plvkcinvdkgsrqn
rsvtsg*glalkaggvdilefaicflllgwatvlkv*dgw*ffpm*glarsalrlta---

---VNFNLXPRSXQLXDCRRLSNELGAVSFRVAFSYEGLRLFH*flxsnphfne*spsly
lxqxifilxnifktkklccclvmllkxgaxfifthxklnclfylrnlkkkntewvkymvv
*ivlvksetllqrkirkkkenqrlvvlkre*sstdvtsppslvsvkrrvttlktsqpllk
finiqfiikiinfxeifnfflki

Frame B:
*h**lyrpkgkrvkipapsngilg*pivirdinwrsrksylflltlswgppnqvnwrrgf
iaqwkstvlwigsrir*mvlenrimvfnpiwcsyq*phqvskvnslwsnvlm*irevgkt
dl*lrdkdwl*rlvewtywsllfvfyf*dgqlf*rfkmggnsfqcegllvllyd*q---

---*ilixilvpxnfxivddyqmn*vl*ase*rsvtrg*gfsisfxnqtlismnsrhxfi
*xxtysyxeifsklknfvvvw*cc*kxelflflhxsnstvyfiyatlkkktqng*stwwf
escw*sqkrysker*grkkktkgwsc*kendlqqt*rrrrrwfr*keglqhskrpnrcln
lliynl*lk**ixkkyltff*k*

Frame C:
ntsdfigrkgsglkflhhrmgy*gnrs*sgtsiggrgrvifsc*hclgvlrirstgdeds
shngraqsfglglasakwslktglwylilfgvrtnnhirspr*iasgqmy*cr*GKSAKP
ICNFGIRIGSKGWWSGHIGVCYLFFTFRMGNCFEGLRWVVILSNVRACSFCFTINS---

---kf*fxssfrstfxl*ttik*trccklpssvqlrgveafplvfxikpsfq*ivaixlf
xaxhihtxkyfqn*ktlllfgdvvekxsxfyfytxqtqlfilftqp*kkkhrmgkvhggl
nragkvrnatpkkdkeekrkpkvgrakkrmifnrrnvaavagfgkkkgyntqnvptva*i
y*ytiyn*nnkfxrni*lffknk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO845 (VHO845Q) /CSM/VH/VHO8-B/VHO845Q.Seq.d/                       1925   0.0
VHC585 (VHC585Q) /CSM/VH/VHC5-D/VHC585Q.Seq.d/                       1053   0.0
VFN416 (VFN416Q) /CSM/VF/VFN4-A/VFN416Q.Seq.d/                       1053   0.0
VHC731 (VHC731Q) /CSM/VH/VHC7-B/VHC731Q.Seq.d/                       1043   0.0
VHJ738 (VHJ738Q) /CSM/VH/VHJ7-B/VHJ738Q.Seq.d/                       1037   0.0
VHK396 (VHK396Q) /CSM/VH/VHK3-D/VHK396Q.Seq.d/                        999   0.0
AHL322 (AHL322Q) /CSM/AH/AHL3-A/AHL322Q.Seq.d/                        983   0.0
VHA848 (VHA848Q) /CSM/VH/VHA8-B/VHA848Q.Seq.d/                        965   0.0
VHQ207 (VHQ207Q) /CSM/VH/VHQ2-A/VHQ207Q.Seq.d/                        922   0.0
VHH863 (VHH863Q) /CSM/VH/VHH8-C/VHH863Q.Seq.d/                        920   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1053   0.0    1
(BJ426827) Dictyostelium discoideum cDNA clone:ddv60j12, 5' ...  1053   0.0    1
(BJ419681) Dictyostelium discoideum cDNA clone:ddv36i21, 5' ...  1053   0.0    1
(BJ416767) Dictyostelium discoideum cDNA clone:ddv27p04, 5' ...  1053   0.0    1
(BJ419543) Dictyostelium discoideum cDNA clone:ddv36n07, 5' ...  1043   0.0    1
(BJ423784) Dictyostelium discoideum cDNA clone:ddv50l09, 5' ...  1037   0.0    1
(DQ340385) Dictyostelium citrinum 17S ribosomal RNA, 5.8S ri...   926   0.0    3
(BJ443122) Dictyostelium discoideum cDNA clone:ddv51p23, 3' ...   999   0.0    1
(BJ336223) Dictyostelium discoideum cDNA clone:dda53l05, 5' ...   983   0.0    1
(BJ418357) Dictyostelium discoideum cDNA clone:ddv32p12, 5' ...   965   0.0    1
dna update 2008.12.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q556Y1) RecName: Full=40S ribosomal protein S30;  &AC116984_159...   106   1e-21
U77931_1(U77931|pid:none) Rattus norvegicus rRNA promoter bindin...    64   1e-08
AC138087_6(AC138087|pid:none) Medicago truncatula clone mth2-22p...    62   5e-08
EU975114_1(EU975114|pid:none) Zea mays clone 469296 unknown mRNA.      62   5e-08
AP002854_6(AP002854|pid:none) Oryza sativa Japonica Group genomi...    62   5e-08
EU955358_1(EU955358|pid:none) Zea mays clone 1529338 40S ribosom...    61   6e-08
BT081851_1(BT081851|pid:none) Rana catesbeiana clone rcat-evr-53...    58   7e-07
EU247175_1(EU247175|pid:none) Lycosa singoriensis clone LSsin967...    58   7e-07
BT071714_1(BT071714|pid:none) Picea sitchensis clone WS0442_E18 ...    58   7e-07
AK026639_1(AK026639|pid:none) Homo sapiens cDNA: FLJ22986 fis, c...    57   9e-07
protein update 2009. 7.19
PSORT 

 psg: 0.71  gvh: 0.56  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.12
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial

>> prediction for VHO845 is nuc
5' end seq. ID VHO845F
5' end seq. 
>VHO845F.Seq
TTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGAA
TGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTTA
TCTTTTCTTGTTAACATTGTCTTGGGGTCCTCCGAATCAGGTCAACTGGAGACGAGGATT
CATCGCACAATGGAAGAGCACAGTCCTTTGGATTGGGTCTCGCATCCGCTAAATGGTCCT
TGAAAACCGGATTATGGTATTTAATCCTATTTGGTGTTCGTACCAATAACCACATCAGGT
CTCCAAGGTGAATAGCCTCTGGTCAAATGTATTAATGTAGATAAGGGAAGTCGGCAAAAC
CGATCTGTAACTTCGGGATAAGGATTGGCTCTAAAGGCTGGTGGAGTGGACATATTGGAG
TTTGCTATTTGTTTTTTACTTTTAGGATGGGCAACTGTTTTGAAGGTTTAAGATGGGTGG
TAATTCTTTCCAATGTGAGGGCTTGCTCGTTCTGCTTTACGATTAACAGCTNNNNNNNNN
N
Length of 5' end seq. 541
3' end seq. ID VHO845Z
3' end seq. 
>VHO845Z.Seq
NNNNNNNNNNGTAAATTTTAATTTANATCCTCGTTCCGNTCAACTTTTNGATTGTAGACG
ACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAG
GCTTTTCCATTAGTTTTTANAATCAAACCCTCATTTCAATGAATAGTCGCCATCNCTTTA
TTTAGNGCAANACATATTCATACTTNGAAATATTTTCAAAACTAAAAAACTTTGTTGTTG
TTTGGTGATGTTGTTGAAAAANGGAGCTNTTTTTATTTTTACACATNTCAAACTCAACTG
TTTATTTTATTTACGCAACCTTAAAAAAAAAAACACAGAATGGGTAAAGTACATGGTGGT
TTGAATCGTGCTGGTAAAGTCAGAAACGCTACTCCAAAGAAAGATAAGGAAGAAAAAAGA
AAACCAAAGGTTGGTCGTGCTAAAAAGAGAATGATCTTCAACAGACGTAACGTCGCCGCC
GTCGCTGGTTTCGGTAAAAAGAAGGGTTACAACACTCAAAACGTCCCAACCGTTGCTTAA
ATTTATTAATATACAATTTATAATTAAAATAATAAATTTTNAAGAAATATTTAACTTTTT
TTTAAAAATAAA
Length of 3' end seq. 612
Connected seq. ID VHO845P
Connected seq. 
>VHO845P.Seq
TTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGAA
TGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTTA
TCTTTTCTTGTTAACATTGTCTTGGGGTCCTCCGAATCAGGTCAACTGGAGACGAGGATT
CATCGCACAATGGAAGAGCACAGTCCTTTGGATTGGGTCTCGCATCCGCTAAATGGTCCT
TGAAAACCGGATTATGGTATTTAATCCTATTTGGTGTTCGTACCAATAACCACATCAGGT
CTCCAAGGTGAATAGCCTCTGGTCAAATGTATTAATGTAGATAAGGGAAGTCGGCAAAAC
CGATCTGTAACTTCGGGATAAGGATTGGCTCTAAAGGCTGGTGGAGTGGACATATTGGAG
TTTGCTATTTGTTTTTTACTTTTAGGATGGGCAACTGTTTTGAAGGTTTAAGATGGGTGG
TAATTCTTTCCAATGTGAGGGCTTGCTCGTTCTGCTTTACGATTAACAGCT---------
-GTAAATTTTAATTTANATCCTCGTTCCGNTCAACTTTTNGATTGTAGACGACTATCAAA
TGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCA
TTAGTTTTTANAATCAAACCCTCATTTCAATGAATAGTCGCCATCNCTTTATTTAGNGCA
ANACATATTCATACTTNGAAATATTTTCAAAACTAAAAAACTTTGTTGTTGTTTGGTGAT
GTTGTTGAAAAANGGAGCTNTTTTTATTTTTACACATNTCAAACTCAACTGTTTATTTTA
TTTACGCAACCTTAAAAAAAAAAACACAGAATGGGTAAAGTACATGGTGGTTTGAATCGT
GCTGGTAAAGTCAGAAACGCTACTCCAAAGAAAGATAAGGAAGAAAAAAGAAAACCAAAG
GTTGGTCGTGCTAAAAAGAGAATGATCTTCAACAGACGTAACGTCGCCGCCGTCGCTGGT
TTCGGTAAAAAGAAGGGTTACAACACTCAAAACGTCCCAACCGTTGCTTAAATTTATTAA
TATACAATTTATAATTAAAATAATAAATTTTNAAGAAATATTTAACTTTTTTTTAAAAAT
AAA
Length of connected seq. 1133
Full length Seq ID -
Full length Seq. -
Length of full length seq. -