VHO666
Library VH
(Link to library)
Clone ID VHO666
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHO666P
(Link to Original site)
Representative DNA sequence
>VHO666 (VHO666Q) /CSM/VH/VHO6-C/VHO666Q.Seq.d/
AACTCTCGAGTGCAAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATT
CGTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGAT
CACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAA
GTTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACC
ATTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCT
GGTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTC
AGTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGC
GTCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATC
AAACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAXXXXXXXXXXTCATCC
AAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCACGAATGGGATAAAAAT
GATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAAT
GTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAA
TGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTT
TATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACT
GCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATC
TACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAAT
CGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTC
AAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACT
GCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAAC
AAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCA
GAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAGACAATTTAAGTCGCACTTNAG
TTTTCAAANATAGAATCAAATCTAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
NSRVQKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADK
VSGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDF
SSEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLL---

---SSKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSF
VGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPT
LLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTAD
LRSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*ti
*valxfsxiesnlkk


Translated Amino Acid sequence (All Frames)
Frame A:
NSRVQKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADK
VSGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDF
SSEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLL---

---SSKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSF
VGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPT
LLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTAD
LRSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*ti
*valxfsxiesnlkk

Frame B:
tleckkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*---

---hpkmiqklvltislittngikmmp*tfglsvqkvtvpisssmspkvfni*mklkils
lvlsngppkkvlfvmkt*evsvsifmmspstlmpstevvvkssqllvvysmlln*lppql
s*nqst**kllpqktllvvftlysivvevlllvknvvsvphyslskliyqy*npsvspli
yvptlpvklshnvssiiglqlvlstkirkplksl*pperekv*pqksqiltnstknsrqf
kshxsfqx*nqi*kk

Frame C:
lssakkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflir---

---iqr*skssc*lsr**prmg*k*chehlvfrsrr*rcqsprqchqrcsife*n*rffr
wcfpmghqrrccl**kherypfqsl*chpph*chpqrwwsnhpncssctlcc*inclpns
lrtnllsrnycprkrywwyllctqss*rycyw*rtsyrfpiilcqssftsirilrfhr*f
tfphcrssfptmclrslgfnwccqqr*esh*srfshqkekrfsprnprs*qiprktldnl
srtxvfkxrikskk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHO666 (VHO666Q) /CSM/VH/VHO6-C/VHO666Q.Seq.d/ 2430 0.0
VHJ786 (VHJ786Q) /CSM/VH/VHJ7-D/VHJ786Q.Seq.d/ 2411 0.0
VHH822 (VHH822Q) /CSM/VH/VHH8-A/VHH822Q.Seq.d/ 2409 0.0
VHP730 (VHP730Q) /CSM/VH/VHP7-B/VHP730Q.Seq.d/ 1465 0.0
VHK162 (VHK162Q) /CSM/VH/VHK1-C/VHK162Q.Seq.d/ 1465 0.0
VHJ695 (VHJ695Q) /CSM/VH/VHJ6-D/VHJ695Q.Seq.d/ 1465 0.0
VHJ691 (VHJ691Q) /CSM/VH/VHJ6-D/VHJ691Q.Seq.d/ 1465 0.0
VHJ323 (VHJ323Q) /CSM/VH/VHJ3-A/VHJ323Q.Seq.d/ 1465 0.0
VHI690 (VHI690Q) /CSM/VH/VHI6-D/VHI690Q.Seq.d/ 1465 0.0
VHD569 (VHD569Q) /CSM/VH/VHD5-C/VHD569Q.Seq.d/ 1465 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ445750) Dictyostelium discoideum cDNA clone:ddv60c18, 3' ... 1473 0.0 1
(BJ446334) Dictyostelium discoideum cDNA clone:ddv62l07, 3' ... 1465 0.0 1
(BJ443011) Dictyostelium discoideum cDNA clone:ddv51k15, 3' ... 1465 0.0 1
(BJ442773) Dictyostelium discoideum cDNA clone:ddv50m24, 3' ... 1465 0.0 1
(BJ442764) Dictyostelium discoideum cDNA clone:ddv50l21, 3' ... 1465 0.0 1
(BJ442731) Dictyostelium discoideum cDNA clone:ddv50e24, 3' ... 1465 0.0 1
(BJ442218) Dictyostelium discoideum cDNA clone:ddv49n05, 3' ... 1465 0.0 1
(BJ442075) Dictyostelium discoideum cDNA clone:ddv48c24, 3' ... 1465 0.0 1
(BJ441254) Dictyostelium discoideum cDNA clone:ddv46l06, 3' ... 1465 0.0 1
(BJ438830) Dictyostelium discoideum cDNA clone:ddv38i17, 3' ... 1465 0.0 1
dna update 2008.12.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB171046_1(AB171046|pid:none) Macaca fascicularis brain cDNA clo... 355 2e-96
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 303 9e-81
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 301 3e-80
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 298 3e-79
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 297 6e-79
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 296 8e-79
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 296 8e-79
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w... 296 8e-79
(P05197) RecName: Full=Elongation factor 2; Short=EF-2;... 296 8e-79
AJ278147_1(AJ278147|pid:none) Rattus norvegicus partial Ef-2 gen... 296 8e-79
protein update 2009. 7.19
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.02
nuc: 0.04 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: mitochondrial
20.0 %: nuclear
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for VHO666 is cyt

5' end seq. ID VHO666F
5' end seq.
>VHO666F.Seq
AACTCTCGAGTGCAAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATT
CGTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGAT
CACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAA
GTTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACC
ATTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCT
GGTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTC
AGTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGC
GTCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATC
AAACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGANNNNNNNNNN
Length of 5' end seq. 534
3' end seq. ID VHO666Z
3' end seq.
>VHO666Z.Seq
NNNNNNNNNNTCATCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCA
CGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGC
CAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTT
CGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGG
TATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGG
TCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAAC
TCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTAT
TTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTC
CCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGA
TTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTC
AATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAG
AAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAGACAAT
TTAAGTCGCACTTNAGTTTTCAAANATAGAATCAAATCTAAAAAAAA
Length of 3' end seq. 767
Connected seq. ID VHO666P
Connected seq.
>VHO666P.Seq
AACTCTCGAGTGCAAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATT
CGTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGAT
CACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAA
GTTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACC
ATTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCT
GGTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTC
AGTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGC
GTCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATC
AAACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGA----------TCATCC
AAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCACGAATGGGATAAAAAT
GATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAAT
GTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAA
TGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTT
TATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACT
GCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATC
TACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAAT
CGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTC
AAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACT
GCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAAC
AAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCA
GAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAGACAATTTAAGTCGCACTTNAG
TTTTCAAANATAGAATCAAATCTAAAAAAAA
Length of connected seq. 1281
Full length Seq ID -
Full length Seq. -
Length of full length seq. -