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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFO768
Library AF
(Link to library)
Clone ID AFO768
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08784-1
Original site URL
Representative seq. ID AFO768Z
(Link to Original site)
Representative DNA sequence 
>AFO768 (AFO768Q) /CSM/AF/AFO7-C/AFO768Q.Seq.d/
XXXXXXXXXXTGGCTTTCCATAAATCTCATGGTGGTGAAGGTACAATCATGGTAACCAAA
AGTTGAAGAACCTTCCAAAATATGGTGTCGTTGTTTATAAAGAAGAAAATGGTCAAATCT
TAAAATTCGTTGAAAAACCTCAAGTCTACGTTGGTAATAAAATTAATGCTGGTGTTTATA
TTTTTAATCCAACAATTTTAGATAGAATTCAACCAAAACCAACATCAATTGAAAAAGAGA
TTTTCCCAGCAATGGCAGCAGATAGTCAATTATATTGTATGCAATTGGAAGGATTTTGGA
TGGATGTTGGTCAACCAAAAGACTTTTTATCAGGTATGGGATTATATTTAAATTCATTAA
AGTCAAAACAACCAGAACTCTTAGCTACTGGCAATGGTATTATTGGACCAGTTTTAATTG
ATCCATCATCTGTCATTGAACCAGGTTGTTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---gfp*isww*RYNHGNQKLKNLPKYGVVVYKEENGQILKFVEKPQVYVGNKINAGVYI
FNPTILDRIQPKPTSIEKEIFPAMAADSQLYCMQLEGFWMDVGQPKDFLSGMGLYLNSLK
SKQPELLATGNGIIGPVLIDPSSVIEPGC
Translated Amino Acid sequence (All Frames) 
Frame A:
---gfp*isww*RYNHGNQKLKNLPKYGVVVYKEENGQILKFVEKPQVYVGNKINAGVYI
FNPTILDRIQPKPTSIEKEIFPAMAADSQLYCMQLEGFWMDVGQPKDFLSGMGLYLNSLK
SKQPELLATGNGIIGPVLIDPSSVIEPGC


Frame B:
---afhkshggegtimvtks*rtfqnmvslfikkkmvks*nslknlkstlviklmlvfif
liqqf*iefnqnqhqlkkrfsqqwqqivnyivcnwkdfgwmlvnqktfyqvwdyi*ih*s
qnnqns*llamvlldqf*lihhlslnqvv


Frame C:
---lsinlmvvkvqsw*pkveepskiwcrcl*rrkwsnlkir*ktsslrw**n*cwclyf
*snnfr*nstktnin*krdfpsngsr*siilyaigrildgcwstkrlfirygiifkfikv
kttrtlsywqwyywtsfn*siich*trlf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFO768 (AFO768Q) /CSM/AF/AFO7-C/AFO768Q.Seq.d/                        874   0.0
AFK424 (AFK424Q) /CSM/AF/AFK4-A/AFK424Q.Seq.d/                        839   0.0
AFE530 (AFE530Q) /CSM/AF/AFE5-B/AFE530Q.Seq.d/                        819   0.0
VFI845 (VFI845Q) /CSM/VF/VFI8-B/VFI845Q.Seq.d/                        779   0.0
AFN134 (AFN134Q) /CSM/AF/AFN1-B/AFN134Q.Seq.d/                        779   0.0
AFO866 (AFO866Q) /CSM/AF/AFO8-C/AFO866Q.Seq.d/                        771   0.0
AFH849 (AFH849Q) /CSM/AF/AFH8-C/AFH849Q.Seq.d/                        765   0.0
AFN736 (AFN736Q) /CSM/AF/AFN7-B/AFN736Q.Seq.d/                        724   0.0
SLC424 (SLC424Q) /CSM/SL/SLC4-A/SLC424Q.Seq.d/                        416   e-115
SSD715 (SSD715Q) /CSM/SS/SSD7-A/SSD715Q.Seq.d/                        353   1e-96
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BQ993764|BQ993764.1 QGF5G14.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGF5G14, mRNA sequence.    46   1e-12  3
BQ872057|BQ872057.1 QGI13I20.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI13I20, mRNA sequence.    46   2e-10  3
BQ861621|BQ861621.1 QGC19C04.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC19C04, mRNA sequence.    46   2e-10  3
BQ874895|BQ874895.1 QGI6J07.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI6J07, mRNA sequence.    46   2e-10  3
BQ852273|BQ852273.1 QGB17J10.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB17J10, mRNA sequence.    46   2e-10  3
BQ864388|BQ864388.1 QGC26I18.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC26I18, mRNA sequence.    46   2e-10  3
BQ849920|BQ849920.1 QGB11C21.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB11C21, mRNA sequence.    46   2e-10  3
BQ860090|BQ860090.1 QGC14N03.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC14N03, mRNA sequence.    46   2e-10  3
CF574090|CF574090.1 MCSA079H12 Maturing Sugarcane Stem Lambda ZIPLOX Library (MCS) Saccharum sp. cDNA clone MCSA084A11 5' similar to GDP-mannose pyrophosphorylase, mRNA sequence.    42   2e-08  4
CA277175|CA277175.1 SCRLSD2013H09.g SD2 Saccharum officinarum cDNA clone SCRLSD2013H09 5', mRNA sequence.    42   2e-08  4
dna update 2003.12. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q68EY9) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   179   1e-46
(Q68EQ1) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   177   4e-46
FJ489652_1(FJ489652|pid:none) Carica papaya GDP-mannose pyrophos...   170   3e-44
(A2VD83) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   170   4e-44
(Q6DBU5) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   171   6e-44
(P0C5I2) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   172   7e-44
(Q9Y5P6) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   171   1e-43
(Q8BTZ7) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   171   2e-43
AK024319_1(AK024319|pid:none) Homo sapiens cDNA FLJ14257 fis, cl...   170   2e-43
AF135421_1(AF135421|pid:none) Homo sapiens GDP-mannose pyrophosp...   170   2e-43
protein update 2009. 4.26
PSORT 

 psg: 0.70  gvh: 0.34  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for AFO768 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFO768Z
3' end seq. 
>AFO768Z.Seq
----------TGGCTTTCCATAAATCTCATGGTGGTGAAGGTACAATCATGGTAACCAAA
AGTTGAAGAACCTTCCAAAATATGGTGTCGTTGTTTATAAAGAAGAAAATGGTCAAATCT
TAAAATTCGTTGAAAAACCTCAAGTCTACGTTGGTAATAAAATTAATGCTGGTGTTTATA
TTTTTAATCCAACAATTTTAGATAGAATTCAACCAAAACCAACATCAATTGAAAAAGAGA
TTTTCCCAGCAATGGCAGCAGATAGTCAATTATATTGTATGCAATTGGAAGGATTTTGGA
TGGATGTTGGTCAACCAAAAGACTTTTTATCAGGTATGGGATTATATTTAAATTCATTAA
AGTCAAAACAACCAGAACTCTTAGCTACTGGCAATGGTATTATTGGACCAGTTTTAATTG
ATCCATCATCTGTCATTGAACCAGGTTGTTT
Length of 3' end seq. 441
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -