NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFO760
Library AF
(Link to library)
Clone ID AFO760
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14989-1
Original site URL
Representative seq. ID AFO760P
(Link to Original site)
Representative DNA sequence 
>AFO760 (AFO760Q) /CSM/AF/AFO7-C/AFO760Q.Seq.d/
ACAATTCTCTTTTTATTAGTTATTGGTGGTATGGCAGCAATTTCGGGTATTGCCTACACA
AAAGGTGACCCAAGTAGATTGGTACCAAATGCACCAAATATTCCATCAATTCCAGGTTTT
AATACAAATACTACCTCATCTGAAAATCCAATTGAACAATACTTTGTTTCACATCTTGAA
AGTTTAGTAGCAGAATTAAAGAGAGATAAAGATATTCTCATTTACTCTGTTTTATTAGCA
ATTGCATTGGGTGCAGCTTGGATTCAATTATTAAAATCTTTCACTAGATTCTTCATTTAT
TTCACTTTATGTGTTGGTGTTGCTTTAGTTGCAACTTTAGGTGGTTTATTTATGGCTTTA
GGTCATAAAGAAGGTAGTGAAAGTACAATGATTGTTGGTGGTTGTATTATAATTTGTACA
TTAGTATTAGTAGTTGTAATTGTTTATCTTAGAAAGAGTATTGATTTAACATGTGCAATG
TTTACAGAGACATGTAGAGGTGTTCAACGTAGTCCATCTGTATTTGTTATTGCATCATTA
GTTGTATTATTTTTCATTGGTTTCATTGCATATTGGACAAGTTCATTCATTTATTTATTC
AGTATTCCAGGCTCAACAGTCAATCCATTGAATGATCATACCTCATCAGAAGCAAATTCA
ACCCGATAGTGAACAAXXXXXXXXXXTCNATCCNATCNCTATTGCTCTCTNTGCNATTTT
CGCNTTTTGNATNTTCNATCTTTTCNCTCANATCGTTGGNATTGGGACANACNCNATCTT
TGTTTGNTATCTCGAANATTTANAAACCNATAAANATGGNAATNTNTACNTTTCCCCANA
TCTTCNCGAACTCNTACAANATNAATGNAACGAATGNAAANAAAAANAACNAAAAAATCN
AAGTAAAGTTTNAATTTTTTTAAAAAAATNAGANANAGTGGAAAAAAAAAAAATAATAAT
AATAATTACTATTTTTATATTATTATTTTCATTTTTCGTTTTCATTTTATTATAGTTAAT
TCATATNNAAATAGTAAAAAAATAAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
qfsfy*llvvwqqfrvlptqkvtqvdwyqmhqifhqfqvliqilphlkiqlnntlfhilk
v**qn*reikifsftlfy*qlhwvqlgfny*nlsldssfislyvlvll*lql*vvylwl*
vikkvvkvq*llvvvl*fvh*y**l*lfilervli*hvqclqrhvevfnvvhlylllhh*
lyyfslvslhigqvhsfiysvfqaqqsih*MIIPHQKQIQPDSEQ---

---XPIXIALXAIFAFXXFXLFXXIVGIGTXXIFVXYLEXLXTXKXGNXYXSPXLXELXQ
XXXNEXKXKXXKNXSKVXIFLKKXXXVEKKKIIIIITIFILLFSFFVFILL*lihxxivk
k*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
tilfllviggmaaisgiaytkgdpsrlvpnapnipsipgfntnttssenpieqyfvshle
slvaelkrdkdiliysvllaialgaawiqllksftrffiyftlcvgvalvatlgglfmal
ghkegsestmivggciiictlvlvvvivylrksidltcamftetcrgvqrspsvfviasl
vvlffigfiaywtssfiylfsipgstvnplndhtsseanstr**t---

---sixslllsxxfsxfxxsifslxslxlgxtxslfxisxixkpixmxxxtfpxifxnsy
xxnxtnxxkxnxkixvkfxff*knxxxwkkkk****llflyyyfhfsfsfyys*fixk**
knkk

Frame B:
qfsfy*llvvwqqfrvlptqkvtqvdwyqmhqifhqfqvliqilphlkiqlnntlfhilk
v**qn*reikifsftlfy*qlhwvqlgfny*nlsldssfislyvlvll*lql*vvylwl*
vikkvvkvq*llvvvl*fvh*y**l*lfilervli*hvqclqrhvevfnvvhlylllhh*
lyyfslvslhigqvhsfiysvfqaqqsih*MIIPHQKQIQPDSEQ---

---xsxxycslcxfrxlxxxsfxsxrwxwdxxxlclxsrxfxnx*xwxxxxfpxssrtxt
xxmxrmxxkxtkksk*sxnffkkxrxsgkkknnnnnyyfyiiififrfhfiivnsyxnsk
kikk

Frame C:
nslfisywwygsnfgyclhkr*pk*igtkctkysinsrf*ykyyli*ksn*tilcfts*k
fssriker*ryshllcfisncigcsldsiikifh*ilhlfhfmcwccfscnfrwfiygfr
s*rr**kyndcwwlyynlyisisscncls*key*fnmcnvyrdm*rcst*sicicyciis
ciifhwfhcildkfihlfiqysrlnsqsie*sylirskfnpivn---

---XPIXIALXAIFAFXXFXLFXXIVGIGTXXIFVXYLEXLXTXKXGNXYXSPXLXELXQ
XXXNEXKXKXXKNXSKVXIFLKKXXXVEKKKIIIIITIFILLFSFFVFILL*lihxxivk
k*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFO760 (AFO760Q) /CSM/AF/AFO7-C/AFO760Q.Seq.d/                       1538   0.0
CFD413 (CFD413Q) /CSM/CF/CFD4-A/CFD413Q.Seq.d/                       1106   0.0
SSF280 (SSF280Q) /CSM/SS/SSF2-D/SSF280Q.Seq.d/                        797   0.0
CFA101 (CFA101Q) /CSM/CF/CFA1-A/CFA101Q.Seq.d/                        722   0.0
SSK669 (SSK669Q) /CSM/SS/SSK6-C/SSK669Q.Seq.d/                        523   e-147
CHC326 (CHC326Q) /CSM/CH/CHC3-B/CHC326Q.Seq.d/                        232   9e-60
VFC321 (VFC321Q) /CSM/VF/VFC3-A/VFC321Q.Seq.d/                        230   3e-59
SSF860 (SSF860Q) /CSM/SS/SSF8-C/SSF860Q.Seq.d/                        230   3e-59
SSD161 (SSD161Q) /CSM/SS/SSD1-C/SSD161Q.Seq.d/                        230   3e-59
SSD453 (SSD453Q) /CSM/SS/SSD4-C/SSD453Q.Seq.d/                        224   2e-57
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL137246|AL137246.16 Human DNA sequence from clone RP11-255P5 on chromosome 13.    50  0.057  1
AL733742|AL733742.1 Danio rerio genomic clone DKey-8H19, genomic survey sequence.    50  0.057  1
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    44  0.23  4
BX571984|BX571984.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    42  0.53  5
AL929307|AL929307.8 Zebrafish DNA sequence from clone CH211-85A24 in linkage group 20.    38  0.59  6
AP000623|AP000623.6 Homo sapiens genomic DNA, chromosome 11 clone:CMB9-71P3, complete sequence.    44  0.72  2
AC004710|AC004710.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 2 unordered pieces.    42  0.76  4
BX005350|BX005350.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-58C8.    40  0.80  8
AC139986|AC139986.4 Rattus norvegicus clone CH230-124E12, WORKING DRAFT SEQUENCE, 60 unordered pieces.    46  0.88  1
AC026122|AC026122.14 Homo sapiens 12 BAC RP11-902D13 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    46  0.88  1
dna update 2003. 9.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54IJ2) RecName: Full=CTL-like protein DDB_G0288717;                 402   e-111
(Q54I48) RecName: Full=Choline transporter-like protein 2; AltNa...    48   5e-04
AF134350_1(AF134350|pid:none) Drosophila melanogaster transcript...    34   7.0
CP000393_1562(CP000393|pid:none) Trichodesmium erythraeum IMS101...    34   9.2
protein update 2009. 4.26
PSORT 

 psg: 0.48  gvh: 0.57  alm: 0.09  top: 0.50  tms: 0.13  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 28.0 %: plasma membrane
	 16.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear
	  4.0 %: peroxisomal
	  4.0 %: vacuolar

>> prediction for AFO760 is end
5' end seq. ID AFO760F
5' end seq. 
>AFO760F.Seq
ACAATTCTCTTTTTATTAGTTATTGGTGGTATGGCAGCAATTTCGGGTATTGCCTACACA
AAAGGTGACCCAAGTAGATTGGTACCAAATGCACCAAATATTCCATCAATTCCAGGTTTT
AATACAAATACTACCTCATCTGAAAATCCAATTGAACAATACTTTGTTTCACATCTTGAA
AGTTTAGTAGCAGAATTAAAGAGAGATAAAGATATTCTCATTTACTCTGTTTTATTAGCA
ATTGCATTGGGTGCAGCTTGGATTCAATTATTAAAATCTTTCACTAGATTCTTCATTTAT
TTCACTTTATGTGTTGGTGTTGCTTTAGTTGCAACTTTAGGTGGTTTATTTATGGCTTTA
GGTCATAAAGAAGGTAGTGAAAGTACAATGATTGTTGGTGGTTGTATTATAATTTGTACA
TTAGTATTAGTAGTTGTAATTGTTTATCTTAGAAAGAGTATTGATTTAACATGTGCAATG
TTTACAGAGACATGTAGAGGTGTTCAACGTAGTCCATCTGTATTTGTTATTGCATCATTA
GTTGTATTATTTTTCATTGGTTTCATTGCATATTGGACAAGTTCATTCATTTATTTATTC
AGTATTCCAGGCTCAACAGTCAATCCATTGAATGATCATACCTCATCAGAAGCAAATTCA
ACCCGATAGTGAACAA----------
Length of 5' end seq. 676
3' end seq. ID AFO760Z
3' end seq. 
>AFO760Z.Seq
----------TCNATCCNATCNCTATTGCTCTCTNTGCNATTTTCGCNTTTTGNATNTTC
NATCTTTTCNCTCANATCGTTGGNATTGGGACANACNCNATCTTTGTTTGNTATCTCGAA
NATTTANAAACCNATAAANATGGNAATNTNTACNTTTCCCCANATCTTCNCGAACTCNTA
CAANATNAATGNAACGAATGNAAANAAAAANAACNAAAAAATCNAAGTAAAGTTTNAATT
TTTTTAAAAAAATNAGANANAGTGGAAAAAAAAAAAATAATAATAATAATTACTATTTTT
ATATTATTATTTTCATTTTTCGTTTTCATTTTATTATAGTTAATTCATATNNAAATAGTA
AAAAAATAAAAAAAA
Length of 3' end seq. 365
Connected seq. ID AFO760P
Connected seq. 
>AFO760P.Seq
ACAATTCTCTTTTTATTAGTTATTGGTGGTATGGCAGCAATTTCGGGTATTGCCTACACA
AAAGGTGACCCAAGTAGATTGGTACCAAATGCACCAAATATTCCATCAATTCCAGGTTTT
AATACAAATACTACCTCATCTGAAAATCCAATTGAACAATACTTTGTTTCACATCTTGAA
AGTTTAGTAGCAGAATTAAAGAGAGATAAAGATATTCTCATTTACTCTGTTTTATTAGCA
ATTGCATTGGGTGCAGCTTGGATTCAATTATTAAAATCTTTCACTAGATTCTTCATTTAT
TTCACTTTATGTGTTGGTGTTGCTTTAGTTGCAACTTTAGGTGGTTTATTTATGGCTTTA
GGTCATAAAGAAGGTAGTGAAAGTACAATGATTGTTGGTGGTTGTATTATAATTTGTACA
TTAGTATTAGTAGTTGTAATTGTTTATCTTAGAAAGAGTATTGATTTAACATGTGCAATG
TTTACAGAGACATGTAGAGGTGTTCAACGTAGTCCATCTGTATTTGTTATTGCATCATTA
GTTGTATTATTTTTCATTGGTTTCATTGCATATTGGACAAGTTCATTCATTTATTTATTC
AGTATTCCAGGCTCAACAGTCAATCCATTGAATGATCATACCTCATCAGAAGCAAATTCA
ACCCGATAGTGAACAA----------TCNATCCNATCNCTATTGCTCTCTNTGCNATTTT
CGCNTTTTGNATNTTCNATCTTTTCNCTCANATCGTTGGNATTGGGACANACNCNATCTT
TGTTTGNTATCTCGAANATTTANAAACCNATAAANATGGNAATNTNTACNTTTCCCCANA
TCTTCNCGAACTCNTACAANATNAATGNAACGAATGNAAANAAAAANAACNAAAAAATCN
AAGTAAAGTTTNAATTTTTTTAAAAAAATNAGANANAGTGGAAAAAAAAAAAATAATAAT
AATAATTACTATTTTTATATTATTATTTTCATTTTTCGTTTTCATTTTATTATAGTTAAT
TCATATNNAAATAGTAAAAAAATAAAAAAAA
Length of connected seq. 1041
Full length Seq ID -
Full length Seq. -
Length of full length seq. -