VHO533
Library VH
(Link to library)
Clone ID VHO533
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11249-1|Contig-U12738-1
Original site URL
Representative seq. ID VHO533P
(Link to Original site)
Representative DNA sequence
>VHO533 (VHO533Q) /CSM/VH/VHO5-B/VHO533Q.Seq.d/
ACAGACATAAATAATATAATTATATTAACAAAAAAATATAATAGGAATCAAAAATATTTA
GAGAATTGATTCAAAATGCAGAAGATGCTCGAGCTGATACAGTCATAATAAAGGTTGATG
AAGGCACATATCCAAATAATGGGTTATTAATTTCAAATGATAACCAAGAAATTCAAAGTT
CAAAAGAATTATTAGGTCCATCAATTTTAATTTATAATAATGCAACTTTTCAAAAACATG
ATTGGGAAGGAATTTGTCAAATTAGTCAAGGTAGTAAAAAAGAAAATCTAAAAAGTGTTG
GCAATTTCGGTTTAGGTTGGAATAGTGTTTATCATATAACAGATAATCCAATTGTTTATA
GTGGTAATAATGTTTGGTTTGCAGATCCAAATGAGAGAATGAGTGGTGGCTTATTCTTTG
ATTTGGATGATGAAGATGATTATAACAAATGTCTTAGTTTXXXXXXXXXXAAAAGCATTG
TCGATTCTATTCCANCAAANCAAATTTTTAAAGGTGAAAAACAGATTTATAGGTTTTATT
TAATTCCAAACATTGGTTCCTTTGAATTAAATGTTTCAATTGAAATTATTACAAAATTTT
TAACTCTTTATGGTAATCATTATGTCGACGATGGTGAATTAAGAAAACTAAAATTTATTC
CATCTGAAAATGGTGTTTATTCAACTCCTGATTCATTTTATGTTTTAGGTCCACTTGAAA
GGGATTTAATAAGAAATTTCGAACCATCTAAAATTTTAAATCAATCTTTGGATGGTTTAA
CTGGTTATTTATCTAAATTTGGCTTAAAATTTAAACTATCAGATAAACATATATGTTCAA
AGGTTATTGATTTTCTTTCAAATCAAGATTCAATAGAAACCTATAAAAATTTTATGGATT
ATTTAAATCAAAGAGGTGAGAATATTGGTGATTCATTAATTGATTTCAAAGATATCCCAT
TTATTCCATCCAGTGAATTCGATACCTATGATGGATTTGGCTCAAATGAATCTAAAATTT
CATTATCAGAGTGTACACTATCAAGTTATAAAGATTGTTTATTCACTGTAAAAACTCCAA
TTAAAGTAACCAAAAATTACAACAACCCCATTAACAAATACCTATCATCAAATTTAAATG
ATAACATTATTCAGCATTTGATTAATTTAAATTCTATGGAATTCAATGATGAAACATCAT
TCGATCCAAATATAATTTTCCACAATACCTATAAAGAAATNATTATTAATTAAAAATTTC
AAACTAAATG
sequence update 2002.10.25
Translated Amino Acid sequence
rhk*ynyinkki**ESKIFRELIQNAEDARADTVIIKVDEGTYPNNGLLISNDNQEIQSS
KELLGPSILIYNNATFQKHDWEGICQISQGSKKENLKSVGNFGLGWNSVYHITDNPIVYS
GNNVWFADPNERMSGGLFFDLDDEDDYNKCLS---

---KSIVDSIPXXQIFKGEKQIYRFYLIPNIGSFELNVSIEIITKFLTLYGNHYVDDGEL
RKLKFIPSENGVYSTPDSFYVLGPLERDLIRNFEPSKILNQSLDGLTGYLSKFGLKFKLS
DKHICSKVIDFLSNQDSIETYKNFMDYLNQRGENIGDSLIDFKDIPFIPSSEFDTYDGFG
SNESKISLSECTLSSYKDCLFTVKTPIKVTKNYNNPINKYLSSNLNDNIIQHLINLNSME
FNDETSFDPNIIFHNTYKEXIIN*kfqtk


Translated Amino Acid sequence (All Frames)
Frame A:
tdinniiiltkkynrnqkylen*fkmqkmleliqs**rlmkahiqimgy*fqmitkkfkv
qkny*vhqf*fiimqlfknmigkefvklvkvvkkki*kvlaisv*vgivfii*qiiqlfi
vvimfglqiqmre*vvaysliwmmkmiitnvlv---

---KSIVDSIPXXQIFKGEKQIYRFYLIPNIGSFELNVSIEIITKFLTLYGNHYVDDGEL
RKLKFIPSENGVYSTPDSFYVLGPLERDLIRNFEPSKILNQSLDGLTGYLSKFGLKFKLS
DKHICSKVIDFLSNQDSIETYKNFMDYLNQRGENIGDSLIDFKDIPFIPSSEFDTYDGFG
SNESKISLSECTLSSYKDCLFTVKTPIKVTKNYNNPINKYLSSNLNDNIIQHLINLNSME
FNDETSFDPNIIFHNTYKEXIIN*kfqtk

Frame B:
qt*ii*ly*qkniigikni*ridskcrrcss*yshnkg**rhisk*wvinfk**prnskf
kriirsinfnl**cnfskt*lgrnlsn*sr**krkskkcwqfrfrle*clsynr*sncl*
w**clvcrsk*enewwlil*fg**r*l*qms*f---

---kalsilfxqxkflkvknrfigfi*fqtlvpln*mfqlkllqnf*lfmviimstmvn*
en*nlfhlkmvfiqllihfmf*vhlkgi**eisnhlkf*inlwmv*lviylnla*nlnyq
iniyvqrlliffqikiq*kpikilwii*ikevrilvih*liskishlfhpvnsipmmdla
qmnlkfhyqsvhyqvikivysl*klqlk*pkitttpltntyhqi*mitlfsi*li*ilwn
smmkhhsiqi*fstipikkxlliknfkln

Frame C:
rhk*ynyinkki**ESKIFRELIQNAEDARADTVIIKVDEGTYPNNGLLISNDNQEIQSS
KELLGPSILIYNNATFQKHDWEGICQISQGSKKENLKSVGNFGLGWNSVYHITDNPIVYS
GNNVWFADPNERMSGGLFFDLDDEDDYNKCLS---

---khcrfysxkxnf*r*ktdl*vlfnskhwfl*ikcfn*nyykifnslw*slcrrw*ik
ktkiysi*kwclfns*filcfrst*kgfnkkfrti*nfksifgwfnwlfi*iwlki*tir
*tymfkgy*fsfksrfnrnl*kfyglfkskr*eyw*fin*fqrypiysiq*iryl*wiwl
k*i*nfiirvytikl*rlfihcknsn*snqklqqph*qipiikfk**hysafd*fkfygi
q**niirskynfpqyl*rnxy*lkisn*m

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHO533 (VHO533Q) /CSM/VH/VHO5-B/VHO533Q.Seq.d/ 1857 0.0
AHJ527 (AHJ527Q) /CSM/AH/AHJ5-B/AHJ527Q.Seq.d/ 1086 0.0
VHF491 (VHF491Q) /CSM/VH/VHF4-D/VHF491Q.Seq.d/ 656 0.0
SHI292 (SHI292Q) /CSM/SH/SHI2-D/SHI292Q.Seq.d/ 450 e-125
VHE271 (VHE271Q) /CSM/VH/VHE2-C/VHE271Q.Seq.d/ 432 e-120
VHN647 (VHN647Q) /CSM/VH/VHN6-B/VHN647Q.Seq.d/ 426 e-118
VHK810 (VHK810Q) /CSM/VH/VHK8-A/VHK810Q.Seq.d/ 426 e-118
VHK791 (VHK791Q) /CSM/VH/VHK7-D/VHK791Q.Seq.d/ 426 e-118
VHD239 (VHD239Q) /CSM/VH/VHD2-B/VHD239Q.Seq.d/ 426 e-118
VHC102 (VHC102Q) /CSM/VH/VHC1-A/VHC102Q.Seq.d/ 426 e-118

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ445665) Dictyostelium discoideum cDNA clone:ddv60a09, 3' ... 1568 0.0 1
(BJ409320) Dictyostelium discoideum cDNA clone:dds40g24, 3' ... 1092 0.0 2
(BJ353466) Dictyostelium discoideum cDNA clone:dda50e07, 3' ... 702 0.0 4
(BJ426781) Dictyostelium discoideum cDNA clone:ddv60a09, 5' ... 474 0.0 3
(BJ421132) Dictyostelium discoideum cDNA clone:ddv41f24, 5' ... 458 0.0 3
(BJ395962) Dictyostelium discoideum cDNA clone:dds40g24, 5' ... 450 0.0 2
(BJ439183) Dictyostelium discoideum cDNA clone:ddv39m18, 3' ... 230 0.0 5
(BJ445095) Dictyostelium discoideum cDNA clone:ddv58m12, 3' ... 230 0.0 6
(BJ439843) Dictyostelium discoideum cDNA clone:ddv41f24, 3' ... 656 0.0 1
(BJ419850) Dictyostelium discoideum cDNA clone:ddv37m10, 5' ... 426 0.0 2
dna update 2008.12.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9NZJ4) RecName: Full=Sacsin; &AL157766_4(AL157766|pid:none) 96 2e-18
BC138482_1(BC138482|pid:none) Mus musculus sacsin, mRNA (cDNA cl... 94 8e-18
(Q9JLC8) RecName: Full=Sacsin; 94 8e-18
BC171956_1(BC171956|pid:none) Mus musculus sacsin, mRNA (cDNA cl... 94 8e-18
BC142916_1(BC142916|pid:none) Danio rerio hypothetical LOC555303... 92 3e-17
CP001577_292(CP001577|pid:none) Micromonas sp. RCC299 chromosome... 85 5e-15
AL732351_6(AL732351|pid:none) Oryza sativa genomic DNA, chromoso... 78 6e-13
AB006708_10(AB006708|pid:none) Arabidopsis thaliana genomic DNA,... 78 6e-13
AL606457_18(AL606457|pid:none) Oryza sativa genomic DNA, chromos... 78 6e-13
CR749427_1(CR749427|pid:none) Homo sapiens mRNA; cDNA DKFZp686B1... 71 7e-11
protein update 2009. 7.19
PSORT

psg: 0.58 gvh: 0.39 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
28.0 %: nuclear
16.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for VHO533 is cyt

5' end seq. ID VHO533F
5' end seq.
>VHO533F.Seq
ACAGACATAAATAATATAATTATATTAACAAAAAAATATAATAGGAATCAAAAATATTTA
GAGAATTGATTCAAAATGCAGAAGATGCTCGAGCTGATACAGTCATAATAAAGGTTGATG
AAGGCACATATCCAAATAATGGGTTATTAATTTCAAATGATAACCAAGAAATTCAAAGTT
CAAAAGAATTATTAGGTCCATCAATTTTAATTTATAATAATGCAACTTTTCAAAAACATG
ATTGGGAAGGAATTTGTCAAATTAGTCAAGGTAGTAAAAAAGAAAATCTAAAAAGTGTTG
GCAATTTCGGTTTAGGTTGGAATAGTGTTTATCATATAACAGATAATCCAATTGTTTATA
GTGGTAATAATGTTTGGTTTGCAGATCCAAATGAGAGAATGAGTGGTGGCTTATTCTTTG
ATTTGGATGATGAAGATGATTATAACAAATGTCTTAGTTTNNNNNNNNNN
Length of 5' end seq. 470
3' end seq. ID VHO533Z
3' end seq.
>VHO533Z.Seq
NNNNNNNNNNAAAAGCATTGTCGATTCTATTCCANCAAANCAAATTTTTAAAGGTGAAAA
ACAGATTTATAGGTTTTATTTAATTCCAAACATTGGTTCCTTTGAATTAAATGTTTCAAT
TGAAATTATTACAAAATTTTTAACTCTTTATGGTAATCATTATGTCGACGATGGTGAATT
AAGAAAACTAAAATTTATTCCATCTGAAAATGGTGTTTATTCAACTCCTGATTCATTTTA
TGTTTTAGGTCCACTTGAAAGGGATTTAATAAGAAATTTCGAACCATCTAAAATTTTAAA
TCAATCTTTGGATGGTTTAACTGGTTATTTATCTAAATTTGGCTTAAAATTTAAACTATC
AGATAAACATATATGTTCAAAGGTTATTGATTTTCTTTCAAATCAAGATTCAATAGAAAC
CTATAAAAATTTTATGGATTATTTAAATCAAAGAGGTGAGAATATTGGTGATTCATTAAT
TGATTTCAAAGATATCCCATTTATTCCATCCAGTGAATTCGATACCTATGATGGATTTGG
CTCAAATGAATCTAAAATTTCATTATCAGAGTGTACACTATCAAGTTATAAAGATTGTTT
ATTCACTGTAAAAACTCCAATTAAAGTAACCAAAAATTACAACAACCCCATTAACAAATA
CCTATCATCAAATTTAAATGATAACATTATTCAGCATTTGATTAATTTAAATTCTATGGA
ATTCAATGATGAAACATCATTCGATCCAAATATAATTTTCCACAATACCTATAAAGAAAT
NATTATTAATTAAAAATTTCAAACTAAATG
Length of 3' end seq. 810
Connected seq. ID VHO533P
Connected seq.
>VHO533P.Seq
ACAGACATAAATAATATAATTATATTAACAAAAAAATATAATAGGAATCAAAAATATTTA
GAGAATTGATTCAAAATGCAGAAGATGCTCGAGCTGATACAGTCATAATAAAGGTTGATG
AAGGCACATATCCAAATAATGGGTTATTAATTTCAAATGATAACCAAGAAATTCAAAGTT
CAAAAGAATTATTAGGTCCATCAATTTTAATTTATAATAATGCAACTTTTCAAAAACATG
ATTGGGAAGGAATTTGTCAAATTAGTCAAGGTAGTAAAAAAGAAAATCTAAAAAGTGTTG
GCAATTTCGGTTTAGGTTGGAATAGTGTTTATCATATAACAGATAATCCAATTGTTTATA
GTGGTAATAATGTTTGGTTTGCAGATCCAAATGAGAGAATGAGTGGTGGCTTATTCTTTG
ATTTGGATGATGAAGATGATTATAACAAATGTCTTAGTTT----------AAAAGCATTG
TCGATTCTATTCCANCAAANCAAATTTTTAAAGGTGAAAAACAGATTTATAGGTTTTATT
TAATTCCAAACATTGGTTCCTTTGAATTAAATGTTTCAATTGAAATTATTACAAAATTTT
TAACTCTTTATGGTAATCATTATGTCGACGATGGTGAATTAAGAAAACTAAAATTTATTC
CATCTGAAAATGGTGTTTATTCAACTCCTGATTCATTTTATGTTTTAGGTCCACTTGAAA
GGGATTTAATAAGAAATTTCGAACCATCTAAAATTTTAAATCAATCTTTGGATGGTTTAA
CTGGTTATTTATCTAAATTTGGCTTAAAATTTAAACTATCAGATAAACATATATGTTCAA
AGGTTATTGATTTTCTTTCAAATCAAGATTCAATAGAAACCTATAAAAATTTTATGGATT
ATTTAAATCAAAGAGGTGAGAATATTGGTGATTCATTAATTGATTTCAAAGATATCCCAT
TTATTCCATCCAGTGAATTCGATACCTATGATGGATTTGGCTCAAATGAATCTAAAATTT
CATTATCAGAGTGTACACTATCAAGTTATAAAGATTGTTTATTCACTGTAAAAACTCCAA
TTAAAGTAACCAAAAATTACAACAACCCCATTAACAAATACCTATCATCAAATTTAAATG
ATAACATTATTCAGCATTTGATTAATTTAAATTCTATGGAATTCAATGATGAAACATCAT
TCGATCCAAATATAATTTTCCACAATACCTATAAAGAAATNATTATTAATTAAAAATTTC
AAACTAAATG
Length of connected seq. 1260
Full length Seq ID -
Full length Seq. -
Length of full length seq. -