>AFO752 (AFO752Q) /CSM/AF/AFO7-C/AFO752Q.Seq.d/
ATTTTCAACCAAATCAAGAAAAACTAATAATATATTTAAGATGTCTGAAAATTCATCACC
AAAATTAGAATCAACATCAGCAGCAGCAGCAAGTACAAAAAAACCATTCCCAGAATGGAT
TAAACCTAAAGGCAAAGAAACTGAATTATTAATTAATAATAGTTTAACAGGTGGTAAAGT
ACCATTCGTTTTCAATGAAAGTGGTAAAGGTAGATCATTAACATGGTATGCTTGTGGTCC
AACAGTTTATGATGCATCACATATGGGTCATGCTAGAACTTATATTAGTTTTGATATCAT
TAGACGTATTATGAAAAATTATCTTGGTTTCAATATCCAATATGTTATGAACATTACCGA
TATTGATGATAAAATCATTATTCGTGCAAATGAAAATGGTATTTCACATAGTGATCTTTC
AAAAAAATGGGAGACTGCTTTCTTTGAAGATATGAAATTATTAAATGTATTACCACCAGA
TGCATTAACAAGAGTTACAGAATATGTACCACAAATTGTTGAATATGTTGAAAAGATTAT
TTCAAATGGATTTGCATATGAATCAAATGGATCAGTTTATTTTGATACAGTAGCATTTTC
AAAAGCACATGATTATGGTXXXXXXXXXXAATGTCAAAATCCTTAAAGAATTTCATCACA
ATTAACCAAGCCTTGGAAAAGTATACTTCACGTCAAATGAGAATGTTTTTCATTCTTCAT
AAATATGATAAAGCCATGAACTATTCACCAGAGTCCATGGGTTACGCCATTGAAATGGAG
AAAACTTTTGTAGAGTTCTTCCATACCGCCAAACAAATCCTTAGAGATTCTCCATTATCT
TTACCACAATTTTGGACTCAAGCTGAAAAGGATTTAAATAAACATCTTCAAAATGCAAAT
GACCAAGTTCATCAATTCATTCTTGATAACTTTAACACCTCTGACGCTTTGAAAACTTTA
TCAGATCTCGTCAATAAAACAAATGTTTACATTAGATCATGTGCTGAACAAAAGACAAAT
CCAAGATTAAATTTAATTAGTGCAATCGCAGAGTATATCACTTACATTTTCTCTGTTTTC
GGTTTAACCGAATCTTCAACCGCCTCTTCAATGATTGGTTTCGGTTCCGCTGGTAAAGGT
AATATCGAAGAGGAGATGACTCCAATCTTAAATGCTCTCACTCAATTCCGTTCAGAGGTA
CGTGCTTCTGCAATCGCAAAAGATACTACCTCAATCCTTAAAACTTGTGATAACCTTCGT
GATGAGGTTTTACCATTATTGGGCGTAAAGATTGATGATAAATCCGCAACAACTGCAATG
GGAAATTTGAAGATAAAGAAACCCTCAAAAAAGAAATGAACAAAAGAAAGAAATNAAAAG
AAGAAACAA

FSTKSRKTNNIFKMSENSSPKLESTSAAAASTKKPFPEWIKPKGKETELLINNSLTGGKV
PFVFNESGKGRSLTWYACGPTVYDASHMGHARTYISFDIIRRIMKNYLGFNIQYVMNITD
IDDKIIIRANENGISHSDLSKKWETAFFEDMKLLNVLPPDALTRVTEYVPQIVEYVEKII
SNGFAYESNGSVYFDTVAFSKAHDYG---

---MSKSLKNFITINQALEKYTSRQMRMFFILHKYDKAMNYSPESMGYAIEMEKTFVEFF
HTAKQILRDSPLSLPQFWTQAEKDLNKHLQNANDQVHQFILDNFNTSDALKTLSDLVNKT
NVYIRSCAEQKTNPRLNLISAIAEYITYIFSVFGLTESSTASSMIGFGSAGKGNIEEEMT
PILNALTQFRSEVRASAIAKDTTSILKTCDNLRDEVLPLLGVKIDDKSATTAMGNLKIKK
PSKKK*tkernxkkkq

Frame A:
ifnqikkn**yi*dv*kfitkirinisssskykktiprmd*t*rqrn*iin***fnrw*s
tirfq*kw*r*iinmvclwsnsl*citygsc*nly*f*yh*tyyeklswfqypicyehyr
y***nhysck*kwyft**sfkkmgdcfl*ryeiikcittrcinksyricttnc*ic*kdy
fkwici*ikwislf*yssifkst*lw---

---nvkilkefhhn*pslgkvyftsnenvfhss*i**shelftrvhglrh*ngenfcrvl
pyrqtnp*rfsiifttildss*kgfk*tsskck*psssihs**l*hl*rfenfirsrq*n
kclh*imc*tkdkskikfn*cnrrvyhlhflcfrfnrifnrlfndwfrfrw*r*yrrgdd
snlkcshsipfrgtcfcnrkryylnp*nl**ps**gftiigrkd***irnncngkfedke
tlkkemnkrkkxkeet

Frame B:
FSTKSRKTNNIFKMSENSSPKLESTSAAAASTKKPFPEWIKPKGKETELLINNSLTGGKV
PFVFNESGKGRSLTWYACGPTVYDASHMGHARTYISFDIIRRIMKNYLGFNIQYVMNITD
IDDKIIIRANENGISHSDLSKKWETAFFEDMKLLNVLPPDALTRVTEYVPQIVEYVEKII
SNGFAYESNGSVYFDTVAFSKAHDYG---

---MSKSLKNFITINQALEKYTSRQMRMFFILHKYDKAMNYSPESMGYAIEMEKTFVEFF
HTAKQILRDSPLSLPQFWTQAEKDLNKHLQNANDQVHQFILDNFNTSDALKTLSDLVNKT
NVYIRSCAEQKTNPRLNLISAIAEYITYIFSVFGLTESSTASSMIGFGSAGKGNIEEEMT
PILNALTQFRSEVRASAIAKDTTSILKTCDNLRDEVLPLLGVKIDDKSATTAMGNLKIKK
PSKKK*tkernxkkkq

Frame C:
fqpnqekliiylrclkihhqn*nqhqqqqqvqknhsqnglnlkakklny*liiv*qvvky
hsfsmkvvkvdh*hgmlvvqqfmmhhiwvmlelilvlisldvl*kiilvsisnml*tlpi
lmikslfvqmkmvfhivifqkngrllslki*ny*myyhqmh*qelqnmyhkllnmlkrlf
qmdlhmnqmdqfiliq*hfqkhmim---

---cqnp*rissqltkpwksilhvk*ecfsffinmikp*tihqspwvtplkwrkll*sss
ippnksleilhylyhnfglklkri*inifkmqmtkfinsflitltpltl*klyqissikq
mftldhvlnkrqiqd*i*lvqsqsisltfslfsv*pnlqpplq*lvsvplvkviskrr*l
qs*mlslnsvqryvllqsqkilpqslklvitfvmrfyhywa*rlminpqqlqwei*r*rn
pqkrneqkkexkrrn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFO752 (AFO752Q) /CSM/AF/AFO7-C/AFO752Q.Seq.d/                       2476   0.0
SFD396 (SFD396Q) /CSM/SF/SFD3-D/SFD396Q.Seq.d/                       1364   0.0
SFI454 (SFI454Q) /CSM/SF/SFI4-C/SFI454Q.Seq.d/                       1320   0.0
AFJ714 (AFJ714Q) /CSM/AF/AFJ7-A/AFJ714Q.Seq.d/                       1279   0.0
AFO629 (AFO629Q) /CSM/AF/AFO6-B/AFO629Q.Seq.d/                       1269   0.0
AFJ344 (AFJ344Q) /CSM/AF/AFJ3-B/AFJ344Q.Seq.d/                       1269   0.0
AFM118 (AFM118Q) /CSM/AF/AFM1-A/AFM118Q.Seq.d/                       1255   0.0
VFL754 (VFL754Q) /CSM/VF/VFL7-C/VFL754Q.Seq.d/                       1235   0.0
CHD303 (CHD303Q) /CSM/CH/CHD3-A/CHD303Q.Seq.d/                       1223   0.0
AFJ330 (AFJ330Q) /CSM/AF/AFJ3-B/AFJ330Q.Seq.d/                       1207   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AQ449880|AQ449880.1 500005E02.x1 CpIOWAM13mp18gDNA1 Cryptosporidium parvum genomic similar to cysteinyl-tRNA synthetase, DNA sequence.    66  1e-06  1
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    60  9e-06  9
Z71523|Z71523.1 S.cerevisiae chromosome XIV reading frame ORF YNL247w.    46  6e-05  2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    36  3e-04  11
X96722|X96722.1 S.cerevisiae DNA region from chromosome XIV, left arm.    46  6e-04  2
AE002113|AE002113.1 Ureaplasma urealyticum section 14 of 59 of the complete genome.    44  0.001  4
BM400907|BM400907.1 5009-0-80-A04.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    44  0.062  2
BQ547227|BQ547227.1 EST630854 TpMugugaSh01 Theileria parva cDNA clone TPFDB67, mRNA sequence.    38  0.11  3
BX538350|BX538350.1 Cryptosporidium parvum chromosome 6, complete sequence; segment 1/4.    58  0.18  6
AC113261|AC113261.1 Trypanosoma cruzi chromosome 3 clone cosmid Tcc1f17 strain CL Brener, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    50  0.22  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014185_147(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...   191   4e-47
BX538350_42(BX538350|pid:none) Cryptosporidium parvum chromosome...   188   3e-46
AL590448_49(AL590448|pid:none) chromosome VIII of strain GB-M1 o...   172   2e-41
CR940352_62(CR940352|pid:none) Theileria annulata strain Ankara ...   163   1e-38
BC166536_1(BC166536|pid:none) Rattus norvegicus similar to hypot...   162   2e-38
(Q8BYM8) RecName: Full=Probable cysteinyl-tRNA synthetase, mitoc...   160   1e-37
AK021302_1(AK021302|pid:none) Mus musculus 13 days embryo stomac...   160   1e-37
AK009937_1(AK009937|pid:none) Mus musculus adult male tongue cDN...   160   1e-37
AK041962_1(AK041962|pid:none) Mus musculus 3 days neonate thymus...   160   1e-37
BC007220_1(BC007220|pid:none) Homo sapiens cysteinyl-tRNA synthe...   159   2e-37

 psg: 0.69  gvh: 0.38  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 20.0 %: nuclear
	  4.0 %: vacuolar

>> prediction for AFO752 is cyt

>AFO752F.Seq
ATTTTCAACCAAATCAAGAAAAACTAATAATATATTTAAGATGTCTGAAAATTCATCACC
AAAATTAGAATCAACATCAGCAGCAGCAGCAAGTACAAAAAAACCATTCCCAGAATGGAT
TAAACCTAAAGGCAAAGAAACTGAATTATTAATTAATAATAGTTTAACAGGTGGTAAAGT
ACCATTCGTTTTCAATGAAAGTGGTAAAGGTAGATCATTAACATGGTATGCTTGTGGTCC
AACAGTTTATGATGCATCACATATGGGTCATGCTAGAACTTATATTAGTTTTGATATCAT
TAGACGTATTATGAAAAATTATCTTGGTTTCAATATCCAATATGTTATGAACATTACCGA
TATTGATGATAAAATCATTATTCGTGCAAATGAAAATGGTATTTCACATAGTGATCTTTC
AAAAAAATGGGAGACTGCTTTCTTTGAAGATATGAAATTATTAAATGTATTACCACCAGA
TGCATTAACAAGAGTTACAGAATATGTACCACAAATTGTTGAATATGTTGAAAAGATTAT
TTCAAATGGATTTGCATATGAATCAAATGGATCAGTTTATTTTGATACAGTAGCATTTTC
AAAAGCACATGATTATGGT----------

>AFO752Z.Seq
----------AATGTCAAAATCCTTAAAGAATTTCATCACAATTAACCAAGCCTTGGAAA
AGTATACTTCACGTCAAATGAGAATGTTTTTCATTCTTCATAAATATGATAAAGCCATGA
ACTATTCACCAGAGTCCATGGGTTACGCCATTGAAATGGAGAAAACTTTTGTAGAGTTCT
TCCATACCGCCAAACAAATCCTTAGAGATTCTCCATTATCTTTACCACAATTTTGGACTC
AAGCTGAAAAGGATTTAAATAAACATCTTCAAAATGCAAATGACCAAGTTCATCAATTCA
TTCTTGATAACTTTAACACCTCTGACGCTTTGAAAACTTTATCAGATCTCGTCAATAAAA
CAAATGTTTACATTAGATCATGTGCTGAACAAAAGACAAATCCAAGATTAAATTTAATTA
GTGCAATCGCAGAGTATATCACTTACATTTTCTCTGTTTTCGGTTTAACCGAATCTTCAA
CCGCCTCTTCAATGATTGGTTTCGGTTCCGCTGGTAAAGGTAATATCGAAGAGGAGATGA
CTCCAATCTTAAATGCTCTCACTCAATTCCGTTCAGAGGTACGTGCTTCTGCAATCGCAA
AAGATACTACCTCAATCCTTAAAACTTGTGATAACCTTCGTGATGAGGTTTTACCATTAT
TGGGCGTAAAGATTGATGATAAATCCGCAACAACTGCAATGGGAAATTTGAAGATAAAGA
AACCCTCAAAAAAGAAATGAACAAAAGAAAGAAATNAAAAGAAGAAACAA

>AFO752P.Seq
ATTTTCAACCAAATCAAGAAAAACTAATAATATATTTAAGATGTCTGAAAATTCATCACC
AAAATTAGAATCAACATCAGCAGCAGCAGCAAGTACAAAAAAACCATTCCCAGAATGGAT
TAAACCTAAAGGCAAAGAAACTGAATTATTAATTAATAATAGTTTAACAGGTGGTAAAGT
ACCATTCGTTTTCAATGAAAGTGGTAAAGGTAGATCATTAACATGGTATGCTTGTGGTCC
AACAGTTTATGATGCATCACATATGGGTCATGCTAGAACTTATATTAGTTTTGATATCAT
TAGACGTATTATGAAAAATTATCTTGGTTTCAATATCCAATATGTTATGAACATTACCGA
TATTGATGATAAAATCATTATTCGTGCAAATGAAAATGGTATTTCACATAGTGATCTTTC
AAAAAAATGGGAGACTGCTTTCTTTGAAGATATGAAATTATTAAATGTATTACCACCAGA
TGCATTAACAAGAGTTACAGAATATGTACCACAAATTGTTGAATATGTTGAAAAGATTAT
TTCAAATGGATTTGCATATGAATCAAATGGATCAGTTTATTTTGATACAGTAGCATTTTC
AAAAGCACATGATTATGGT----------AATGTCAAAATCCTTAAAGAATTTCATCACA
ATTAACCAAGCCTTGGAAAAGTATACTTCACGTCAAATGAGAATGTTTTTCATTCTTCAT
AAATATGATAAAGCCATGAACTATTCACCAGAGTCCATGGGTTACGCCATTGAAATGGAG
AAAACTTTTGTAGAGTTCTTCCATACCGCCAAACAAATCCTTAGAGATTCTCCATTATCT
TTACCACAATTTTGGACTCAAGCTGAAAAGGATTTAAATAAACATCTTCAAAATGCAAAT
GACCAAGTTCATCAATTCATTCTTGATAACTTTAACACCTCTGACGCTTTGAAAACTTTA
TCAGATCTCGTCAATAAAACAAATGTTTACATTAGATCATGTGCTGAACAAAAGACAAAT
CCAAGATTAAATTTAATTAGTGCAATCGCAGAGTATATCACTTACATTTTCTCTGTTTTC
GGTTTAACCGAATCTTCAACCGCCTCTTCAATGATTGGTTTCGGTTCCGCTGGTAAAGGT
AATATCGAAGAGGAGATGACTCCAATCTTAAATGCTCTCACTCAATTCCGTTCAGAGGTA
CGTGCTTCTGCAATCGCAAAAGATACTACCTCAATCCTTAAAACTTGTGATAACCTTCGT
GATGAGGTTTTACCATTATTGGGCGTAAAGATTGATGATAAATCCGCAACAACTGCAATG
GGAAATTTGAAGATAAAGAAACCCTCAAAAAAGAAATGAACAAAAGAAAGAAATNAAAAG
AAGAAACAA