>VHO242 (VHO242Q) /CSM/VH/VHO2-B/VHO242Q.Seq.d/
ATNTTTACGTTTTNCTTAAACTCATAACACCNCACTATATAGTGTGTTGTTATTATTAAT
ATGGAAGATGAAAATAAAGAAGTTATGGATACTTACAACAACAAGCAACAGCAACAACAA
CNACAACAACANCAACAACANCANCAACNACAACAACNNCNAXXXXXXXXXXCGTCAATG
TCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAAT
GGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTT
ATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTG
CTCGTCGTGTACTCTATGCTGNTGAATTAANTGCCTCCCCAACTCTCTTAGAACCAATNT
ACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGNACTCAATC
GTCGTANAGGTATTGTTATTGGTGAAGNNCNTCGTATCGGTTCCCCATTATTATCTGTAA
AAGCTCATTNACCAGC

xlrfx*THNTXLYSVLLLLIWKMKIKKLWILTTTSNSNNNXNNXNNXXNXNNX---

---VNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGG
QIIPTARRVLYAXELXASPTLLEPXYLVEITAPENAIGGIYSXLNRRXGIVIGEXXRIGS
PLLSVKAHXP

Frame A:
xftfxlns*hxti*cvviinmedenkevmdtynnkqqqqqxqqxqqxxqxqqxx---

---rqchqrcsife*n*rffrwcfpmghqrrccl**kherypfqsl*chpph*chpqrww
snhpncssctlcx*ixclpnslrtnxlsrnycprkrywwyllxtqssxrycyw*xxsyrf
piiickssxts

Frame B:
xlrfx*THNTXLYSVLLLLIWKMKIKKLWILTTTSNSNNNXNNXNNXXNXNNX---

---VNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGG
QIIPTARRVLYAXELXASPTLLEPXYLVEITAPENAIGGIYSXLNRRXGIVIGEXXRIGS
PLLSVKAHXP

Frame C:
xyvxlklitphyivccyy*ygr*k*rsygylqqqatattttttxttxxttttx---

---smspkvfni*mklkilslvlsngppkkvlfvmkt*evsvsifmmspstlmpstevvv
kssqllvvysmlxn*xppqls*nqxt**kllpqktllvvftlxsivvxvlllvkxxvsvp
hyyl*klixq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO242 (VHO242Q) /CSM/VH/VHO2-B/VHO242Q.Seq.d/                        708   0.0
VHG874 (VHG874Q) /CSM/VH/VHG8-D/VHG874Q.Seq.d/                        690   0.0
VHQ491 (VHQ491Q) /CSM/VH/VHQ4-D/VHQ491Q.Seq.d/                        690   0.0
VHQ483 (VHQ483Q) /CSM/VH/VHQ4-D/VHQ483Q.Seq.d/                        690   0.0
VHQ476 (VHQ476Q) /CSM/VH/VHQ4-D/VHQ476Q.Seq.d/                        690   0.0
VHQ473 (VHQ473Q) /CSM/VH/VHQ4-D/VHQ473Q.Seq.d/                        690   0.0
VHQ453 (VHQ453Q) /CSM/VH/VHQ4-C/VHQ453Q.Seq.d/                        690   0.0
VHQ446 (VHQ446Q) /CSM/VH/VHQ4-B/VHQ446Q.Seq.d/                        690   0.0
VHQ441 (VHQ441Q) /CSM/VH/VHQ4-B/VHQ441Q.Seq.d/                        690   0.0
VHQ436 (VHQ436Q) /CSM/VH/VHQ4-B/VHQ436Q.Seq.d/                        690   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ445373) Dictyostelium discoideum cDNA clone:ddv59c12, 3' ...   708   0.0    1
(BJ406633) Dictyostelium discoideum cDNA clone:dds35n20, 3' ...   692   0.0    1
(AU284982) Dictyostelium discoideum gamete cDNA clone:FC-BS0...   690   0.0    1
(AU284442) Dictyostelium discoideum gamete cDNA clone:FC-AV2...   690   0.0    1
(AU039543) Dictyostelium discoideum slug cDNA, clone SLE722.      690   0.0    1
(AU039435) Dictyostelium discoideum slug cDNA, clone SLH782.      690   0.0    1
(AU034793) Dictyostelium discoideum slug cDNA, clone SLE337.      690   0.0    1
(AU034446) Dictyostelium discoideum slug cDNA, clone SLC886.      690   0.0    1
(AU034114) Dictyostelium discoideum slug cDNA, clone SLB758.      690   0.0    1
(AU033620) Dictyostelium discoideum slug cDNA, clone SLB237.      690   0.0    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ295228_1(DQ295228|pid:none) Malawimonas jakobiformis translati...   189   5e-47
EU812174_1(EU812174|pid:none) Cyanophora paradoxa clone cpeef2-1...   186   3e-46
AY226070_1(AY226070|pid:none) Proterospongia sp. ATCC 50818 elon...   184   1e-45
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation...   181   8e-45
DQ848932_1(DQ848932|pid:none) Scophthalmus maximus clone kbc101 ...   181   1e-44
CP000600_163(CP000600|pid:none) Ostreococcus lucimarinus CCE9901...   181   1e-44
EU812183_1(EU812183|pid:none) Mesostigma viride clone mveef2-13 ...   181   1e-44
AB288080_1(AB288080|pid:none) Raphidiophrys contractilis EF2 mRN...   180   2e-44
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat...   180   2e-44
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088...   180   2e-44

 psg: 0.96  gvh: 0.41  alm: 0.37  top: 0.70  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VHO242 is mit

>VHO242F.Seq
ATNTTTACGTTTTNCTTAAACTCATAACACCNCACTATATAGTGTGTTGTTATTATTAAT
ATGGAAGATGAAAATAAAGAAGTTATGGATACTTACAACAACAAGCAACAGCAACAACAA
CNACAACAACANCAACAACANCANCAACNACAACAACNNCNANNNNNNNNNN

>VHO242Z.Seq
NNNNNNNNNNCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTT
TCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAG
GTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTG
GTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGNTGAATTAANTGCCTCCCCAA
CTCTCTTAGAACCAATNTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTA
TTTACTCTGNACTCAATCGTCGTANAGGTATTGTTATTGGTGAAGNNCNTCGTATCGGTT
CCCCATTATTATCTGTAAAAGCTCATTNACCAGC

>VHO242P.Seq
ATNTTTACGTTTTNCTTAAACTCATAACACCNCACTATATAGTGTGTTGTTATTATTAAT
ATGGAAGATGAAAATAAAGAAGTTATGGATACTTACAACAACAAGCAACAGCAACAACAA
CNACAACAACANCAACAACANCANCAACNACAACAACNNCNA----------CGTCAATG
TCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAAT
GGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTT
ATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTG
CTCGTCGTGTACTCTATGCTGNTGAATTAANTGCCTCCCCAACTCTCTTAGAACCAATNT
ACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGNACTCAATC
GTCGTANAGGTATTGTTATTGGTGAAGNNCNTCGTATCGGTTCCCCATTATTATCTGTAA
AAGCTCATTNACCAGC