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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHO217
Library VH
(Link to library)
Clone ID VHO217
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14874-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHO217 (VHO217Q) /CSM/VH/VHO2-A/VHO217Q.Seq.d/
XXXXXXXXXXCTGAGTCAATGTTGTGTAAAAGATTCAAAGAATGCACTAGAAGAAAATGG
CCTTATAGATATTTAAGAAAGATTGATAAATTTATCAAATTACTATCACTTCAAAATATC
AATGAGATTCCAAAAGAAGAAAAGGAGAAGTTAGAAAGATTCATCCAAGAAAGAGAAGGA
TGTCTCCGTCCAGTCAAAATCAGAATCACTGGTTGCTTAGAAAAGGACGACTCTGAACAT
TTCGTTAACAATGTTAATAGATTTTCAATGGGTTCATCAACTTCTTCATCAATTCCATCA
CCATCACCACAAACCATCGCCATCACACCATCAAAATCCCAAATTCAAAACATCGGTTAT
ATATGGTGGTATTTCTAAAAACCTTCAGATTGAACAATTGGAAAAAGAAAAACCACAAAT
TTTAATATCAACACCGGGTCGTTTAATTGAGATGATAGAGAATGGTCATGTTGATCTTTC
AAGTGTTACAATGTTAGTACTGGATGAGGCTGATAAAATGCTTTCCAAAGGTTTAATACC
ACAACTTAAACAAATTCGTGGTCAAATTAGACCCGATTCACAAAATATATTATTTAGTGC
CACTTTTCCAGATTCATTAAAAGAGGTTTCAAAAGATTGGATTAAAGATCCATCGATTCG
TTTAAGAATTGGTTCTTCAGAATTACCAAAACTAAATCATATTCAACAAGATGCTCAATT
AATTGCCCACCATAAAAAACCACGTGCACTCATTAAACTATTA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---sqccvkdsknaleenglidi*erlinlsnyyhfkismrfqkkkrrs*kdsskkekdv
svqskseslva*KRTTLNISLTMLIDFQWVHQLLHQFHHHHHKPSPSHHQNPKFKTSVIY
GGISKNLQIEQLEKEKPQILISTPGRLIEMIENGHVDLSSVTMLVLDEADKMLSKGLIPQ
LKQIRGQIRPDSQNILFSATFPDSLKEVSKDWIKDPSIRLRIGSSELPKLNHIQQDAQLI
AHHKKPRALIKLL
Translated Amino Acid sequence (All Frames) 
Frame A:
---*vnvv*kiqrmh*kkmal*ifkkd**iyqititskyq*dskrrkgevrkihprkrrm
spssqnqnhwllrkgrl*tfr*qc**ifngfinffinsitittnhrhhtikipnskhrly
mvvflktfrlnnwkkknhkf*yqhrvv*lr**rmvmlifqvlqc*ywmrlikcfpkv*yh
nlnkfvvkldpihkiyylvplfqih*krfqkiglkihrfv*elvlqnyqn*iifnkmln*
lptiknhvhslny


Frame B:
---esmlckrfkectrrkwpyrylrkidkfikllslqnineipkeekeklerfiqeregc
lrpvkiritgclekddsehfvnnvnrfsmgsstsssipspspqtiaitpsksqiqnigyi
wwyf*kpsd*tigkrkttnfnintgsfn*ddrewsc*sfkcynvstg*g**nafqrfntt
t*tnswsn*trftkyii*chfsrfikrgfkrld*rsidsfknwffritktksystrcsin
cpp*kttcth*ti


Frame C:
---sqccvkdsknaleenglidi*erlinlsnyyhfkismrfqkkkrrs*kdsskkekdv
svqskseslva*KRTTLNISLTMLIDFQWVHQLLHQFHHHHHKPSPSHHQNPKFKTSVIY
GGISKNLQIEQLEKEKPQILISTPGRLIEMIENGHVDLSSVTMLVLDEADKMLSKGLIPQ
LKQIRGQIRPDSQNILFSATFPDSLKEVSKDWIKDPSIRLRIGSSELPKLNHIQQDAQLI
AHHKKPRALIKLL
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO217 (VHO217Q) /CSM/VH/VHO2-A/VHO217Q.Seq.d/                       1493   0.0
AHC603 (AHC603Q) /CSM/AH/AHC6-A/AHC603Q.Seq.d/                        585   e-166
SHK558 (SHK558Q) /CSM/SH/SHK5-C/SHK558Q.Seq.d/                         44   0.003
SHJ601 (SHJ601Q) /CSM/SH/SHJ6-A/SHJ601Q.Seq.d/                         44   0.003
SHF796 (SHF796Q) /CSM/SH/SHF7-D/SHF796Q.Seq.d/                         44   0.003
SHE855 (SHE855Q) /CSM/SH/SHE8-C/SHE855Q.Seq.d/                         44   0.003
SHE636 (SHE636Q) /CSM/SH/SHE6-B/SHE636Q.Seq.d/                         44   0.003
SHD487 (SHD487Q) /CSM/SH/SHD4-D/SHD487Q.Seq.d/                         44   0.003
SFB117 (SFB117Q) /CSM/SF/SFB1-A/SFB117Q.Seq.d/                         44   0.003
CHK412 (CHK412Q) /CSM/CH/CHK4-A/CHK412Q.Seq.d/                         44   0.003
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CF828602|CF828602.1 UCRCR01_01N10_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01N10, mRNA sequence.    56   8e-04  1
CF828353|CF828353.1 UCRCR01_01H10_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01H10, mRNA sequence.    56   8e-04  1
CK701763|CK701763.1 USDA-FP_5024 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE39G11 5', mRNA sequence.    56   8e-04  1
CF828476|CF828476.1 UCRCR01_01K07_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01K07, mRNA sequence.    56   8e-04  1
CB293061|CB293061.1 UCRCS01_05ca09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ca09, mRNA sequence.    56   8e-04  1
BX538351|BX538351.1 Cryptosporidium parvum chromosome 6, complete sequence; segment 2/4.    32   0.005  12
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    38   0.008  14
CQ336858|CQ336858.1 Sequence 10952 from Patent WO0157275.          36   0.024  3
CQ299699|CQ299699.1 Sequence 10804 from Patent WO0186003.          36   0.024  3
CQ262645|CQ262645.1 Sequence 10906 from Patent WO0157277.          36   0.024  3
dna update 2004. 3.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54CD6) RecName: Full=Probable ATP-dependent RNA helicase ddx5;...   271   2e-71
(Q5QMN3) RecName: Full=DEAD-box ATP-dependent RNA helicase 20;  ...   118   2e-25
BT041534_1(BT041534|pid:none) Zea mays full-length cDNA clone ZM...   117   5e-25
(A7TTT5) RecName: Full=ATP-dependent RNA helicase DBP2;         ...   116   7e-25
(A3LQW7) RecName: Full=ATP-dependent RNA helicase DBP2;         ...   116   9e-25
Z69382_20(Z69382|pid:none) S.cerevisiae 37,800 bp segment of chr...   115   1e-24
(P24783) RecName: Full=ATP-dependent RNA helicase DBP2;         ...   115   1e-24
(Q6FLF3) RecName: Full=ATP-dependent RNA helicase DBP2;         ...   115   1e-24
AP003416_31(AP003416|pid:none) Oryza sativa Japonica Group genom...   113   6e-24
(Q5N7W4) RecName: Full=DEAD-box ATP-dependent RNA helicase 30;  ...   113   6e-24
protein update 2009. 5.18
PSORT 

 psg: 0.88  gvh: 0.51  alm: 0.46  top: 0.43  tms: 0.00  mit: 0.36  mip: 0.02
 nuc: 0.03  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.12  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VHO217 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHO217Z
3' end seq. 
>VHO217Z.Seq
NNNNNNNNNNCTGAGTCAATGTTGTGTAAAAGATTCAAAGAATGCACTAGAAGAAAATGG
CCTTATAGATATTTAAGAAAGATTGATAAATTTATCAAATTACTATCACTTCAAAATATC
AATGAGATTCCAAAAGAAGAAAAGGAGAAGTTAGAAAGATTCATCCAAGAAAGAGAAGGA
TGTCTCCGTCCAGTCAAAATCAGAATCACTGGTTGCTTAGAAAAGGACGACTCTGAACAT
TTCGTTAACAATGTTAATAGATTTTCAATGGGTTCATCAACTTCTTCATCAATTCCATCA
CCATCACCACAAACCATCGCCATCACACCATCAAAATCCCAAATTCAAAACATCGGTTAT
ATATGGTGGTATTTCTAAAAACCTTCAGATTGAACAATTGGAAAAAGAAAAACCACAAAT
TTTAATATCAACACCGGGTCGTTTAATTGAGATGATAGAGAATGGTCATGTTGATCTTTC
AAGTGTTACAATGTTAGTACTGGATGAGGCTGATAAAATGCTTTCCAAAGGTTTAATACC
ACAACTTAAACAAATTCGTGGTCAAATTAGACCCGATTCACAAAATATATTATTTAGTGC
CACTTTTCCAGATTCATTAAAAGAGGTTTCAAAAGATTGGATTAAAGATCCATCGATTCG
TTTAAGAATTGGTTCTTCAGAATTACCAAAACTAAATCATATTCAACAAGATGCTCAATT
AATTGCCCACCATAAAAAACCACGTGCACTCATTAAACTATTA
Length of 3' end seq. 763
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -