AFO724
Library AF
(Link to library)
Clone ID AFO724
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10032-1
Original site URL
Representative seq. ID AFO724F
(Link to Original site)
Representative DNA sequence
>AFO724 (AFO724Q) /CSM/AF/AFO7-A/AFO724Q.Seq.d/
ATTGTAATTTACATTCAATACATACATATATATACATATATATATATATATAAAATAATA
TAAAATAAGCATTTATAATTTTAATATTTATTTTATTAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
IVIYIQYIHIYTYIYIYKII*nkhl*f*ylfy*kk---


Translated Amino Acid sequence (All Frames)
Frame A:
IVIYIQYIHIYTYIYIYKII*nkhl*f*ylfy*kk---


Frame B:
l*ftfntyiyihiyiyik*ykisiynfniyfikkk---


Frame C:
cnlhsihtyiyiyiyi*nnik*afiilifillkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFL165 (VFL165Q) /CSM/VF/VFL1-C/VFL165Q.Seq.d/ 34 0.40
AFO724 (AFO724Q) /CSM/AF/AFO7-A/AFO724Q.Seq.d/ 34 0.40

own update 2001.11.25
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 270148
Number of Sequences: 25022185
Number of extensions: 270148
Number of successful extensions: 269937
Number of sequences better than 10.0: 0
length of query: 117
length of database: P,692,356,608
effective HSP length: 21
effective length of query: 96
effective length of database: P,166,890,723
effective search space: 3088021509408
effective search space used: 3088021509408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2003. 9.18
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 35,275,684
protein update 2009. 4.26
PSORT -
5' end seq. ID AFO724F
5' end seq.
>AFO724F.Seq
ATTGTAATTTACATTCAATACATACATATATATACATATATATATATATATAAAATAATA
TAAAATAAGCATTTATAATTTTAATATTTATTTTATTAAAAAAAAAA----------
Length of 5' end seq. 107
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -