>VHO201 (VHO201Q) /CSM/VH/VHO2-A/VHO201Q.Seq.d/
ATACATTAATTGCAAAAGAGAAATNATGGAATTAAGAATTCCAACATTTGTATCAAATAT
TTTAAATACATTATTTTTACATTCATTAGGAGTTGAAGGTTTATTTAGGATTAGTGGTAG
TCAAATGGAAATTCAAAATAGAAGAGGAATTGTAAATTTAGGTGATTATTCAACATCAAG
AGATGATAATCCTCATGTTTTAACAGTTTTATTAAAACAATTTTTACGTGATTTACCTGA
ACCAATTTGTACAAATGCATTATATGATTTATTTTTAGCTGCTTCTGATCAAATTAATTT
TCAACAATGTAAAGAAAATGGATTTGAAGTTTTAAAGAAATTAATTAATAGTAATTTACC
AGTTAATAATAGAAATTTATTACAACATTTAATTCACTTTTTAAGATTTGTAGCAATGAA
TCAAACAGTGAATTTAATGGGACCATCGAATTTGAGTAGAGTATTTGGACCAAATTTATT
TTGGAAAAAAGAGACAGGTCCATTGGATATTCAAATTTTACAGAGTACAAGTGAGAAAGT
TAATTTCATAACGGAACAAATGATACTCCATTATGATACCCTATTTXXXXXXXXXXGGTG
ATGAAGGTTCAATTCCAAATTTTTAATTCAAAGACATTTAAACTTGAACATAAAATTTTA
AACCAAGGTTGGGATAAAATATTTCATATCGCATCAATTAATAGAGAGATTTGGATTGGA
TTTTGGGATACAACAGTTAGAGTATTCCCTGGTGATCCAAAGAATAAAGAGATTTTAATC
GATTATAAAGGTTATCATTCAGATGTAGTTTCTTCAATTATTGAAGTACCAAATTTAAAG
GGTGGTGATCCATTCGTTTGGTTTGGTTCATATGATAAATCAATCTCTATAGTTTCAATT
AAAGAAGATACAGCAAAATCTTGGAATTTTACAAATATTAAAAAGAATTTCACTAGACCA
ATTAGACAAGGGTTTTTCATCAAG

YINCKREXMELRIPTFVSNILNTLFLHSLGVEGLFRISGSQMEIQNRRGIVNLGDYSTSR
DDNPHVLTVLLKQFLRDLPEPICTNALYDLFLAASDQINFQQCKENGFEVLKKLINSNLP
VNNRNLLQHLIHFLRFVAMNQTVNLMGPSNLSRVFGPNLFWKKETGPLDIQILQSTSEKV
NFITEQMILHYDTLF---

---VMKVQFQIFNSKTFKLEHKILNQGWDKIFHIASINREIWIGFWDTTVRVFPGDPKNK
EILIDYKGYHSDVVSSIIEVPNLKGGDPFVWFGSYDKSISIVSIKEDTAKSWNFTNIKKN
FTRPIRQGFFIK

Frame A:
ih*lqkrnxgiknsnicikyfkyiiftfirs*rfi*d*w*sngnsk*krnckfr*lfnik
r**sscfnsfiktift*ft*tnlykcii*fifscf*sn*fstm*rkwi*sfkein***ft
s***kfittfnslfkicsnesnsefngtiefe*siwtkfilekrdrsigysnfteyk*es
*fhngtndtpl*ypi---

---gdegsipnf*fkdi*t*t*nfkprlg*nisyrin**rdldwilgyns*sipw*ske*
rdfnrl*rlsfrcsffny*stkfkgw*sirlvwfi**inlysfn*rryskilefyky*ke
fh*tn*trvfhq

Frame B:
YINCKREXMELRIPTFVSNILNTLFLHSLGVEGLFRISGSQMEIQNRRGIVNLGDYSTSR
DDNPHVLTVLLKQFLRDLPEPICTNALYDLFLAASDQINFQQCKENGFEVLKKLINSNLP
VNNRNLLQHLIHFLRFVAMNQTVNLMGPSNLSRVFGPNLFWKKETGPLDIQILQSTSEKV
NFITEQMILHYDTLF---

---VMKVQFQIFNSKTFKLEHKILNQGWDKIFHIASINREIWIGFWDTTVRVFPGDPKNK
EILIDYKGYHSDVVSSIIEVPNLKGGDPFVWFGSYDKSISIVSIKEDTAKSWNFTNIKKN
FTRPIRQGFFIK

Frame C:
tliakekxwn*efqhlyqif*ihyfyih*elkvylglvvvkwkfkieeel*i*viiqhqe
miilmf*qfy*nnfyviylnqfvqmhymiyf*llliklifnnvkkmdlkf*rn*liviyq
liieiyyni*ftf*dl*q*ikq*i*wdhri*veyldqiyfgkkrqvhwifkfyrvqvrkl
is*rnk*ysimipy---

---**rfnskfliqrhlnlnikf*tkvgikyfishqlierfgldfgiqqleyslviqrik
rf*siikviiqm*flqllkyqi*rvvihsfglvhminqsl*fqlkkiqqnlgilqilkri
sldqldkgfss

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO201 (VHO201Q) /CSM/VH/VHO2-A/VHO201Q.Seq.d/                       1885   0.0
VHD290 (VHD290Q) /CSM/VH/VHD2-D/VHD290Q.Seq.d/                        729   0.0
VSJ555 (VSJ555Q) /CSM/VS/VSJ5-C/VSJ555Q.Seq.d/                         38   0.25
VSH439 (VSH439Q) /CSM/VS/VSH4-B/VSH439Q.Seq.d/                         38   0.25
SSL881 (SSL881Q) /CSM/SS/SSL8-D/SSL881Q.Seq.d/                         38   0.25
SSI538 (SSI538Q) /CSM/SS/SSI5-B/SSI538Q.Seq.d/                         38   0.25
SSE724 (SSE724Q) /CSM/SS/SSE7-A/SSE724Q.Seq.d/                         38   0.25
SLK757 (SLK757Q) /CSM/SL/SLK7-C/SLK757Q.Seq.d/                         38   0.25
SLK750 (SLK750Q) /CSM/SL/SLK7-C/SLK750Q.Seq.d/                         38   0.25
SLJ816 (SLJ816Q) /CSM/SL/SLJ8-A/SLJ816Q.Seq.d/                         38   0.25

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ426436) Dictyostelium discoideum cDNA clone:ddv59a02, 5' ...  1156   0.0    1
(BJ445271) Dictyostelium discoideum cDNA clone:ddv59a02, 3' ...   765   0.0    1
(BJ438387) Dictyostelium discoideum cDNA clone:ddv37c24, 3' ...   708   0.0    2
(BJ419961) Dictyostelium discoideum cDNA clone:ddv37c24, 5' ...   418   e-120  2
(AM443189) Vitis vinifera contig VV78X085493.4, whole genome...    50   0.028  2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.034  13
(CU694682) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    52   0.041  1
(AC181971) Medicago truncatula clone mth2-13b13, WORKING DRA...    38   0.049  8
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         34   0.049  9
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   0.053  14

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC108400_1(BC108400|pid:none) Mus musculus Rho GTPase activating...    89   2e-16
AK037710_1(AK037710|pid:none) Mus musculus 16 days neonate thymu...    89   2e-16
AK137444_1(AK137444|pid:none) Mus musculus adult male bone cDNA,...    89   2e-16
AK172878_1(AK172878|pid:none) Mus musculus mRNA for mKIAA0053 pr...    89   2e-16
AK169897_1(AK169897|pid:none) Mus musculus NOD-derived CD11c +ve...    89   3e-16
T26092(T26092) hypothetical protein W02B12.8 - Caenorhabditis el...    88   4e-16
BC105510_1(BC105510|pid:none) Bos taurus Rho GTPase activating p...    88   5e-16
(Q17R89) RecName: Full=Rho GTPase-activating protein RICH2; AltN...    86   1e-15
AK294538_1(AK294538|pid:none) Homo sapiens cDNA FLJ58097 complet...    86   1e-15
AK290396_1(AK290396|pid:none) Homo sapiens cDNA FLJ78435 complet...    84   5e-15

 psg: 0.77  gvh: 0.57  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for VHO201 is cyt

>VHO201F.Seq
ATACATTAATTGCAAAAGAGAAATNATGGAATTAAGAATTCCAACATTTGTATCAAATAT
TTTAAATACATTATTTTTACATTCATTAGGAGTTGAAGGTTTATTTAGGATTAGTGGTAG
TCAAATGGAAATTCAAAATAGAAGAGGAATTGTAAATTTAGGTGATTATTCAACATCAAG
AGATGATAATCCTCATGTTTTAACAGTTTTATTAAAACAATTTTTACGTGATTTACCTGA
ACCAATTTGTACAAATGCATTATATGATTTATTTTTAGCTGCTTCTGATCAAATTAATTT
TCAACAATGTAAAGAAAATGGATTTGAAGTTTTAAAGAAATTAATTAATAGTAATTTACC
AGTTAATAATAGAAATTTATTACAACATTTAATTCACTTTTTAAGATTTGTAGCAATGAA
TCAAACAGTGAATTTAATGGGACCATCGAATTTGAGTAGAGTATTTGGACCAAATTTATT
TTGGAAAAAAGAGACAGGTCCATTGGATATTCAAATTTTACAGAGTACAAGTGAGAAAGT
TAATTTCATAACGGAACAAATGATACTCCATTATGATACCCTATTTNNNNNNNNNN

>VHO201Z.Seq
NNNNNNNNNNGGTGATGAAGGTTCAATTCCAAATTTTTAATTCAAAGACATTTAAACTTG
AACATAAAATTTTAAACCAAGGTTGGGATAAAATATTTCATATCGCATCAATTAATAGAG
AGATTTGGATTGGATTTTGGGATACAACAGTTAGAGTATTCCCTGGTGATCCAAAGAATA
AAGAGATTTTAATCGATTATAAAGGTTATCATTCAGATGTAGTTTCTTCAATTATTGAAG
TACCAAATTTAAAGGGTGGTGATCCATTCGTTTGGTTTGGTTCATATGATAAATCAATCT
CTATAGTTTCAATTAAAGAAGATACAGCAAAATCTTGGAATTTTACAAATATTAAAAAGA
ATTTCACTAGACCAATTAGACAAGGGTTTTTCATCAAG

>VHO201P.Seq
ATACATTAATTGCAAAAGAGAAATNATGGAATTAAGAATTCCAACATTTGTATCAAATAT
TTTAAATACATTATTTTTACATTCATTAGGAGTTGAAGGTTTATTTAGGATTAGTGGTAG
TCAAATGGAAATTCAAAATAGAAGAGGAATTGTAAATTTAGGTGATTATTCAACATCAAG
AGATGATAATCCTCATGTTTTAACAGTTTTATTAAAACAATTTTTACGTGATTTACCTGA
ACCAATTTGTACAAATGCATTATATGATTTATTTTTAGCTGCTTCTGATCAAATTAATTT
TCAACAATGTAAAGAAAATGGATTTGAAGTTTTAAAGAAATTAATTAATAGTAATTTACC
AGTTAATAATAGAAATTTATTACAACATTTAATTCACTTTTTAAGATTTGTAGCAATGAA
TCAAACAGTGAATTTAATGGGACCATCGAATTTGAGTAGAGTATTTGGACCAAATTTATT
TTGGAAAAAAGAGACAGGTCCATTGGATATTCAAATTTTACAGAGTACAAGTGAGAAAGT
TAATTTCATAACGGAACAAATGATACTCCATTATGATACCCTATTT----------GGTG
ATGAAGGTTCAATTCCAAATTTTTAATTCAAAGACATTTAAACTTGAACATAAAATTTTA
AACCAAGGTTGGGATAAAATATTTCATATCGCATCAATTAATAGAGAGATTTGGATTGGA
TTTTGGGATACAACAGTTAGAGTATTCCCTGGTGATCCAAAGAATAAAGAGATTTTAATC
GATTATAAAGGTTATCATTCAGATGTAGTTTCTTCAATTATTGAAGTACCAAATTTAAAG
GGTGGTGATCCATTCGTTTGGTTTGGTTCATATGATAAATCAATCTCTATAGTTTCAATT
AAAGAAGATACAGCAAAATCTTGGAATTTTACAAATATTAAAAAGAATTTCACTAGACCA
ATTAGACAAGGGTTTTTCATCAAG