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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHO142
Library VH
(Link to library)
Clone ID VHO142
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14873-1
Original site URL
Representative seq. ID VHO142P
(Link to Original site)
Representative DNA sequence 
>VHO142 (VHO142Q) /CSM/VH/VHO1-B/VHO142Q.Seq.d/
ATNATAATAAATAACATTTAATATTTTCACATTTATAGATATTATATATTAAATATTATT
AATAATATTAAAATAAATTTCAATTATTTATTATAATATTATTATTTTATATATATTTCA
TATATATTAATATATAAATCAAAAATGTTAAAATTGGTATTGAACAACACTATCAATAGT
GTTGCATCAAAGAATACCTCATCAATAAGCAATGGATTATTAAAAGAATTCTCAAAATTA
TCAATATATAAAAATAACAATAATAAAAAAATAAATAATTGTAAATGCACAAATTGTGTA
TGCAATTGTAAATGTACAAAGAAAACCAATACCACCACCAACACCAATATATATAATAAC
ATGAATAATAATAATAAAAGATATTATTCANCANAAAAAAAAXXXXXXXXXXATCATAAT
AAATTAACATTTAATATTTTCACATTTATAGATATTATATATTAAATATTATTAATAATA
TTAAAATAAATTTCAATTATTTATTATAATATTATTATTTTATATATATTTCATATATAT
TAATATATAAATCAAAAATGTTAAAATTGGTATTGAACAACACTATCAATAGTGTTGCAT
CAAAGAATACCTCATCAATAAGCAATGGATTATTAAAAGAATTCTCAAAATTATCAATAT
ATAAAAATAACAATAATAAAAAAATAAATAATTGTAAATGCACAAATTGTGTATGCAATT
GTAAATGTACAAAGAAAACCAATACCACCACCAACACCAATATATATAATAACANAATAA
TAATAATAAAAGATATTATT
sequence update 2002.10.25
Translated Amino Acid sequence 
xiinni*yfhiyryyilniinnikinfnyll*YYYFIYISYILIYKSKMLKLVLNNTINS
VASKNTSSISNGLLKEFSKLSIYKNNNNKKINNCKCTNCVCNCKCTKKTNTTTNTNIYNN
MNNNNKRYYSXXKK---

---HNKLTFNIFTFIDIIY*illiilk*isiiyyniiilyifhiy*yinqkc*nwy*ttl
sivlhqriphq*amdy*knsqnyqyikitiikk*iivnaqivyaivnvqrkpippptpiy
iitx****kil
Translated Amino Acid sequence (All Frames) 
Frame A:
xiinni*yfhiyryyilniinnikinfnyll*YYYFIYISYILIYKSKMLKLVLNNTINS
VASKNTSSISNGLLKEFSKLSIYKNNNNKKINNCKCTNCVCNCKCTKKTNTTTNTNIYNN
MNNNNKRYYSXXKK---

---iiin*hlifshl*ilyikyy**y*nkfqlfiiillfyiyfiyini*iknvkigieqh
yq*ccikeylinkqwiikrilkiini*k*q**knk*l*mhklcmql*mykenqyhhqhqy
i**xnnnnkryy

Frame B:
x**itfniftfidiiy*illiilk*isiiyyniiilyifhiy*yinqkc*nwy*ttlsiv
lhqriphq*amdy*knsqnyqyikitiikk*iivnaqivyaivnvqrkpippptpiyiit
*iiiikdiixxkk---

---s**ini*yfhiyryyilniinnikinfnyll*yyyfiyisyiliykskmlklvlnnt
insvaskntssisngllkefsklsiyknnnnkkinnckctncvcnckctkktntttntni
ynnxiiiikdii

Frame C:
xnk*hlifshl*ilyikyy**y*nkfqlfiiillfyiyfiyini*iknvkigieqhyq*c
cikeylinkqwiikrilkiini*k*q**knk*l*mhklcmql*mykenqyhhqhqyi**h
e****kilfxxkk---

---HNKLTFNIFTFIDIIY*illiilk*isiiyyniiilyifhiy*yinqkc*nwy*ttl
sivlhqriphq*amdy*knsqnyqyikitiikk*iivnaqivyaivnvqrkpippptpiy
iitx****kil
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO142 (VHO142Q) /CSM/VH/VHO1-B/VHO142Q.Seq.d/                        192   6e-48
VHM688 (VHM688Q) /CSM/VH/VHM6-D/VHM688Q.Seq.d/                         42   0.013
SLB839 (SLB839Q) /CSM/SL/SLB8-B/SLB839Q.Seq.d/                         42   0.013
FC-IC1139 (FC-IC1139Q) /CSM/FC-IC/FC-IC1139Q.Seq.d/                    42   0.013
AFC157 (AFC157Q) /CSM/AF/AFC1-C/AFC157Q.Seq.d/                         42   0.013
SSH613 (SSH613Q) /CSM/SS/SSH6-A/SSH613Q.Seq.d/                         38   0.20
SSG721 (SSG721Q) /CSM/SS/SSG7-A/SSG721Q.Seq.d/                         38   0.20
SSA239 (SSA239Q) /CSM/SS/SSA2-B/SSA239Q.Seq.d/                         38   0.20
SHJ842 (SHJ842Q) /CSM/SH/SHJ8-B/SHJ842Q.Seq.d/                         38   0.20
SHJ742 (SHJ742Q) /CSM/SH/SHJ7-B/SHJ742Q.Seq.d/                         38   0.20
own update 2003.10.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ426511) Dictyostelium discoideum cDNA clone:ddv59c11, 5' ...   157   1e-46  3
(BJ445372) Dictyostelium discoideum cDNA clone:ddv59c11, 3' ...   157   2e-45  2
(AR546612) Sequence 1743 from patent US 6747137.                   44   0.11   2
(AU060875) Dictyostelium discoideum slug cDNA, clone SLB839.       42   0.32   2
(AL831755) Human DNA sequence from clone RP13-279N23 on chro...    42   0.54   2
(AC230213) Bos taurus clone CH240-518H7, WORKING DRAFT SEQUE...    46   2.0    1
(AC163464) Bos taurus clone CH240-125M12, WORKING DRAFT SEQU...    46   2.0    1
(AC189241) Brassica rapa subsp. pekinensis clone KBrB016K20,...    38   2.9    2
(AM770404) Zostera marina EST, 5'-end sequence, meristematic...    36   3.1    2
(AQ650961) Sheared DNA-5D21.TF Sheared DNA Trypanosoma bruce...    34   3.3    2
dna update 2008.12. 9
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 474,551,442
protein update 2009. 7.18
PSORT 

 psg: 0.91  gvh: 0.41  alm: 0.43  top: 0.67  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for VHO142 is cyt
5' end seq. ID VHO142F
5' end seq. 
>VHO142F.Seq
ATNATAATAAATAACATTTAATATTTTCACATTTATAGATATTATATATTAAATATTATT
AATAATATTAAAATAAATTTCAATTATTTATTATAATATTATTATTTTATATATATTTCA
TATATATTAATATATAAATCAAAAATGTTAAAATTGGTATTGAACAACACTATCAATAGT
GTTGCATCAAAGAATACCTCATCAATAAGCAATGGATTATTAAAAGAATTCTCAAAATTA
TCAATATATAAAAATAACAATAATAAAAAAATAAATAATTGTAAATGCACAAATTGTGTA
TGCAATTGTAAATGTACAAAGAAAACCAATACCACCACCAACACCAATATATATAATAAC
ATGAATAATAATAATAAAAGATATTATTCANCANAAAAAAAANNNNNNNNNN
Length of 5' end seq. 412
3' end seq. ID VHO142Z
3' end seq. 
>VHO142Z.Seq
NNNNNNNNNNATCATAATAAATTAACATTTAATATTTTCACATTTATAGATATTATATAT
TAAATATTATTAATAATATTAAAATAAATTTCAATTATTTATTATAATATTATTATTTTA
TATATATTTCATATATATTAATATATAAATCAAAAATGTTAAAATTGGTATTGAACAACA
CTATCAATAGTGTTGCATCAAAGAATACCTCATCAATAAGCAATGGATTATTAAAAGAAT
TCTCAAAATTATCAATATATAAAAATAACAATAATAAAAAAATAAATAATTGTAAATGCA
CAAATTGTGTATGCAATTGTAAATGTACAAAGAAAACCAATACCACCACCAACACCAATA
TATATAATAACANAATAATAATAATAAAAGATATTATT
Length of 3' end seq. 398
Connected seq. ID VHO142P
Connected seq. 
>VHO142P.Seq
ATNATAATAAATAACATTTAATATTTTCACATTTATAGATATTATATATTAAATATTATT
AATAATATTAAAATAAATTTCAATTATTTATTATAATATTATTATTTTATATATATTTCA
TATATATTAATATATAAATCAAAAATGTTAAAATTGGTATTGAACAACACTATCAATAGT
GTTGCATCAAAGAATACCTCATCAATAAGCAATGGATTATTAAAAGAATTCTCAAAATTA
TCAATATATAAAAATAACAATAATAAAAAAATAAATAATTGTAAATGCACAAATTGTGTA
TGCAATTGTAAATGTACAAAGAAAACCAATACCACCACCAACACCAATATATATAATAAC
ATGAATAATAATAATAAAAGATATTATTCANCANAAAAAAAA----------ATCATAAT
AAATTAACATTTAATATTTTCACATTTATAGATATTATATATTAAATATTATTAATAATA
TTAAAATAAATTTCAATTATTTATTATAATATTATTATTTTATATATATTTCATATATAT
TAATATATAAATCAAAAATGTTAAAATTGGTATTGAACAACACTATCAATAGTGTTGCAT
CAAAGAATACCTCATCAATAAGCAATGGATTATTAAAAGAATTCTCAAAATTATCAATAT
ATAAAAATAACAATAATAAAAAAATAAATAATTGTAAATGCACAAATTGTGTATGCAATT
GTAAATGTACAAAGAAAACCAATACCACCACCAACACCAATATATATAATAACANAATAA
TAATAATAAAAGATATTATT
Length of connected seq. 790
Full length Seq ID -
Full length Seq. -
Length of full length seq. -