VHO120
Library VH
(Link to library)
Clone ID VHO120
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12323-1|Contig-U13602-1
Original site URL
Representative seq. ID VHO120P
(Link to Original site)
Representative DNA sequence
>VHO120 (VHO120Q) /CSM/VH/VHO1-A/VHO120Q.Seq.d/
TCTAATATTATTAATCCATGTGGGGTACTNTATATTTTACACGAGGAAATTGGGGTCCAC
CAGCTGATTATATTGATTTATCAAATAGTAATCAAACACTTGTTTCATTTTCTTTAAAAA
NTGCTGGTAAAAAATTCAATATTAATGGTAATTNCCCATTTTCAAAATTACCAACNGGNA
CATGTAGTAACTTTATAGTTGAAAATGGAAACTTTTCAACATTACCAGATCTATCAATTT
TTCAAAGAGCCCAACAATTTTCATTATCAAATTCTGAAATTGGNGGTAATCTTCCATCTG
TAAAAGATACATTACAAAAATCAGCATTCACTCAAACTGCTACTTTAAGTAATAACAAAC
TAACTGGTAGTATCGATGAATCATGGTGTTCAATTAGTTTAGATGTTTCAAATAATTTAT
TATCNGGATCTTTACCAGATTGCTATTATTGTTATTNACAAGATCCAACATATCAAAGAA
GATTAGNNGGTAATAATTTTTCAAATTATAATTTAACTTCAACTTGTANTGATGGTCAAA
TAANTGTTTATAAATTTTTAAATTTATCATCAACACGAGTTACATTAATTGGAAAAAATA
TTGXXXXXXXXXXGGTTCTTTAATTTCAACATTTTCTCAAATTGTTAATAATGCAACCAT
TATAATGACAATTGAAAATATTGAAAGTAACAATGGTAAAGAATTTACATTTGCAGGTAA
TCAATTCACAGTTAGTAAAGATGGTTTTAAACTTTCATTATCAGTTTCAAATTGGAATTA
TAAAAGTAATCTAAACACTTTACAAATCCAAATGTCATCTGATATTTCAACTACTGAAGG
TAAAATTAATAATTGTATAGATAGTGAACATACAAATGTAGAAACATCACCAAATAGTAA
TAATTTACAAAATGTTAATTATCTTAAAATTAGTAAAAATGGTAAAACACTTTATGGTAG
ATTCCAAGATAAAATGCTATCAGATGGTAGACCAACAACAACAATCACTAAAATAATTTC
AAAAGATGATAAAAAAGTTTTAATTTCACTTGATATGCCTCATTGTAATCAATGTTTATT
AGATCCAGATTTTTCAGTTATTATTAATTCAGATTTTAAGTCATCAGATTCATGTGGCAA
AGAAAATAAAAAACCTTGGTTAATTCCAGTTGCTGTCACTGTACCTGTTGTTGGTTGTGC
TTTAATAATTGCAGCATTCATGTTAAGAAAAAAGATTCATAGCAATAAAATACTTCTTAA
TAAATTTGGTGGTAAATAACTGAATAAAAATAATAAATAGNAATCGCATATTCCAAGA
sequence update 2002.10.25
Translated Amino Acid sequence
*yy*SMWGTXYFTRGNWGPPADYIDLSNSNQTLVSFSLKXAGKKFNINGNXPFSKLPTGT
CSNFIVENGNFSTLPDLSIFQRAQQFSLSNSEIGGNLPSVKDTLQKSAFTQTATLSNNKL
TGSIDESWCSISLDVSNNLLSGSLPDCYYCYXQDPTYQRRLXGNNFSNYNLTSTCXDGQI
XVYKFLNLSSTRVTLIGKNI---

---GSLISTFSQIVNNATIIMTIENIESNNGKEFTFAGNQFTVSKDGFKLSLSVSNWNYK
SNLNTLQIQMSSDISTTEGKINNCIDSEHTNVETSPNSNNLQNVNYLKISKNGKTLYGRF
QDKMLSDGRPTTTITKIISKDDKKVLISLDMPHCNQCLLDPDFSVIINSDFKSSDSCGKE
NKKPWLIPVAVTVPVVGCALIIAAFMLRKKIHSNKILLNKFGGK*lnknnk*xshipr


Translated Amino Acid sequence (All Frames)
Frame A:
sniinpcgvlyilheeigvhqliiliyqivikhlfhfl*kxlvknsilmvixhfqnyqxx
hvvtl*lkmetfqhyqiyqffkepnnfhyqilklxvifhl*kihyknqhslklll*vitn
*lvvsmnhgvqlv*mfqiiyyxdlyqiaiivixkiqhiked*xviifqiii*lqlvxmvk
*xfinf*iyhqhelh*lekil---

---GSLISTFSQIVNNATIIMTIENIESNNGKEFTFAGNQFTVSKDGFKLSLSVSNWNYK
SNLNTLQIQMSSDISTTEGKINNCIDSEHTNVETSPNSNNLQNVNYLKISKNGKTLYGRF
QDKMLSDGRPTTTITKIISKDDKKVLISLDMPHCNQCLLDPDFSVIINSDFKSSDSCGKE
NKKPWLIPVAVTVPVVGCALIIAAFMLRKKIHSNKILLNKFGGK*lnknnk*xshipr

Frame B:
lillihvgyxifytrklgsts*ly*fik**sntcfiffkxcw*kiqy*w*xpifkitnxx
m**lys*kwklfnitrsinfsksptifiikf*nwx*ssickryitkisihsncyfk**qt
nw*yr*imvfn*frcfk*fiixiftrlllllxtrsniskkixx**ffkl*fnfnlx*wsn
xcl*ifkfiintsyinwkky---

---vl*fqhflkllimqpl**qlkilkvtmvknlhlqvinsqlvkmvlnfhyqfqigiik
vi*tlykskchlifqllkvkliiv*ivniqm*khhqiviiykmliilklvkmvkhfmvds
kikcyqmvdqqqqslk*fqkmikkf*fhliclivinvy*iqifqllliqilshqihvakk
iknlg*fqllslylllvvl**lqhsc*ekrfiaikyflinlvvnn*ikiinxnrifq

Frame C:
*yy*SMWGTXYFTRGNWGPPADYIDLSNSNQTLVSFSLKXAGKKFNINGNXPFSKLPTGT
CSNFIVENGNFSTLPDLSIFQRAQQFSLSNSEIGGNLPSVKDTLQKSAFTQTATLSNNKL
TGSIDESWCSISLDVSNNLLSGSLPDCYYCYXQDPTYQRRLXGNNFSNYNLTSTCXDGQI
XVYKFLNLSSTRVTLIGKNI---

---ffnfnifsnc**cnhyndn*ky*k*qw*riyicr*sihs**rwf*tfiisfklel*k
*skhftnpnvi*yfny*r*n**lyr**tykcrnitk***ftkc*ls*n**kw*ntlw*ip
r*nairw*tnnnnh*nnfkr**ksfnft*yasl*smfirsrffsyy*frf*virfmwqrk
*ktlvnsscchctccwlcfnncsihvkkkds*q*nts**iww*ite*k**ixiaysk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHO120 (VHO120Q) /CSM/VH/VHO1-A/VHO120Q.Seq.d/ 2476 0.0
VHD603 (VHD603Q) /CSM/VH/VHD6-A/VHD603Q.Seq.d/ 1334 0.0
VFI529 (VFI529Q) /CSM/VF/VFI5-B/VFI529Q.Seq.d/ 1330 0.0
VHL840 (VHL840Q) /CSM/VH/VHL8-B/VHL840Q.Seq.d/ 1302 0.0
VHM358 (VHM358Q) /CSM/VH/VHM3-C/VHM358Q.Seq.d/ 1281 0.0
VHI683 (VHI683Q) /CSM/VH/VHI6-D/VHI683Q.Seq.d/ 1247 0.0
VHN347 (VHN347Q) /CSM/VH/VHN3-B/VHN347Q.Seq.d/ 1237 0.0
VHI883 (VHI883Q) /CSM/VH/VHI8-D/VHI883Q.Seq.d/ 1237 0.0
VHG580 (VHG580Q) /CSM/VH/VHG5-D/VHG580Q.Seq.d/ 1096 0.0
VHK121 (VHK121Q) /CSM/VH/VHK1-A/VHK121Q.Seq.d/ 1057 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ445305) Dictyostelium discoideum cDNA clone:ddv59g05, 3' ... 1245 0.0 1
(BJ444781) Dictyostelium discoideum cDNA clone:ddv57n11, 3' ... 1233 0.0 1
(BJ444182) Dictyostelium discoideum cDNA clone:ddv55d15, 3' ... 1233 0.0 1
(BJ442090) Dictyostelium discoideum cDNA clone:ddv48f22, 3' ... 1233 0.0 1
(BJ432320) Dictyostelium discoideum cDNA clone:ddv18i07, 3' ... 1231 0.0 1
(BJ442085) Dictyostelium discoideum cDNA clone:ddv48e22, 3' ... 1229 0.0 1
(BJ438640) Dictyostelium discoideum cDNA clone:ddv38e02, 3' ... 1219 0.0 1
(BJ443884) Dictyostelium discoideum cDNA clone:ddv54p10, 3' ... 1203 0.0 1
(BJ426466) Dictyostelium discoideum cDNA clone:ddv59g05, 5' ... 1122 0.0 1
(BJ422127) Dictyostelium discoideum cDNA clone:ddv44o19, 5' ... 1080 0.0 2
dna update 2008.12. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117075_41(AC117075|pid:none) Dictyostelium discoideum chromoso... 390 e-107
AC117075_42(AC117075|pid:none) Dictyostelium discoideum chromoso... 187 1e-56
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso... 167 1e-39
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso... 156 1e-36
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom... 155 2e-36
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom... 155 3e-36
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso... 154 7e-36
AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso... 146 1e-33
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso... 143 2e-32
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso... 141 5e-32
protein update 2009. 7.18
PSORT

psg: 0.66 gvh: 0.37 alm: 0.20 top: 0.83 tms: 0.07 mit: 0.25 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.03 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: Golgi
12.0 %: mitochondrial
8.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for VHO120 is cyt

5' end seq. ID VHO120F
5' end seq.
>VHO120F.Seq
TCTAATATTATTAATCCATGTGGGGTACTNTATATTTTACACGAGGAAATTGGGGTCCAC
CAGCTGATTATATTGATTTATCAAATAGTAATCAAACACTTGTTTCATTTTCTTTAAAAA
NTGCTGGTAAAAAATTCAATATTAATGGTAATTNCCCATTTTCAAAATTACCAACNGGNA
CATGTAGTAACTTTATAGTTGAAAATGGAAACTTTTCAACATTACCAGATCTATCAATTT
TTCAAAGAGCCCAACAATTTTCATTATCAAATTCTGAAATTGGNGGTAATCTTCCATCTG
TAAAAGATACATTACAAAAATCAGCATTCACTCAAACTGCTACTTTAAGTAATAACAAAC
TAACTGGTAGTATCGATGAATCATGGTGTTCAATTAGTTTAGATGTTTCAAATAATTTAT
TATCNGGATCTTTACCAGATTGCTATTATTGTTATTNACAAGATCCAACATATCAAAGAA
GATTAGNNGGTAATAATTTTTCAAATTATAATTTAACTTCAACTTGTANTGATGGTCAAA
TAANTGTTTATAAATTTTTAAATTTATCATCAACACGAGTTACATTAATTGGAAAAAATA
TTGNNNNNNNNNN
Length of 5' end seq. 613
3' end seq. ID VHO120Z
3' end seq.
>VHO120Z.Seq
NNNNNNNNNNGGTTCTTTAATTTCAACATTTTCTCAAATTGTTAATAATGCAACCATTAT
AATGACAATTGAAAATATTGAAAGTAACAATGGTAAAGAATTTACATTTGCAGGTAATCA
ATTCACAGTTAGTAAAGATGGTTTTAAACTTTCATTATCAGTTTCAAATTGGAATTATAA
AAGTAATCTAAACACTTTACAAATCCAAATGTCATCTGATATTTCAACTACTGAAGGTAA
AATTAATAATTGTATAGATAGTGAACATACAAATGTAGAAACATCACCAAATAGTAATAA
TTTACAAAATGTTAATTATCTTAAAATTAGTAAAAATGGTAAAACACTTTATGGTAGATT
CCAAGATAAAATGCTATCAGATGGTAGACCAACAACAACAATCACTAAAATAATTTCAAA
AGATGATAAAAAAGTTTTAATTTCACTTGATATGCCTCATTGTAATCAATGTTTATTAGA
TCCAGATTTTTCAGTTATTATTAATTCAGATTTTAAGTCATCAGATTCATGTGGCAAAGA
AAATAAAAAACCTTGGTTAATTCCAGTTGCTGTCACTGTACCTGTTGTTGGTTGTGCTTT
AATAATTGCAGCATTCATGTTAAGAAAAAAGATTCATAGCAATAAAATACTTCTTAATAA
ATTTGGTGGTAAATAACTGAATAAAAATAATAAATAGNAATCGCATATTCCAAGA
Length of 3' end seq. 715
Connected seq. ID VHO120P
Connected seq.
>VHO120P.Seq
TCTAATATTATTAATCCATGTGGGGTACTNTATATTTTACACGAGGAAATTGGGGTCCAC
CAGCTGATTATATTGATTTATCAAATAGTAATCAAACACTTGTTTCATTTTCTTTAAAAA
NTGCTGGTAAAAAATTCAATATTAATGGTAATTNCCCATTTTCAAAATTACCAACNGGNA
CATGTAGTAACTTTATAGTTGAAAATGGAAACTTTTCAACATTACCAGATCTATCAATTT
TTCAAAGAGCCCAACAATTTTCATTATCAAATTCTGAAATTGGNGGTAATCTTCCATCTG
TAAAAGATACATTACAAAAATCAGCATTCACTCAAACTGCTACTTTAAGTAATAACAAAC
TAACTGGTAGTATCGATGAATCATGGTGTTCAATTAGTTTAGATGTTTCAAATAATTTAT
TATCNGGATCTTTACCAGATTGCTATTATTGTTATTNACAAGATCCAACATATCAAAGAA
GATTAGNNGGTAATAATTTTTCAAATTATAATTTAACTTCAACTTGTANTGATGGTCAAA
TAANTGTTTATAAATTTTTAAATTTATCATCAACACGAGTTACATTAATTGGAAAAAATA
TTG----------GGTTCTTTAATTTCAACATTTTCTCAAATTGTTAATAATGCAACCAT
TATAATGACAATTGAAAATATTGAAAGTAACAATGGTAAAGAATTTACATTTGCAGGTAA
TCAATTCACAGTTAGTAAAGATGGTTTTAAACTTTCATTATCAGTTTCAAATTGGAATTA
TAAAAGTAATCTAAACACTTTACAAATCCAAATGTCATCTGATATTTCAACTACTGAAGG
TAAAATTAATAATTGTATAGATAGTGAACATACAAATGTAGAAACATCACCAAATAGTAA
TAATTTACAAAATGTTAATTATCTTAAAATTAGTAAAAATGGTAAAACACTTTATGGTAG
ATTCCAAGATAAAATGCTATCAGATGGTAGACCAACAACAACAATCACTAAAATAATTTC
AAAAGATGATAAAAAAGTTTTAATTTCACTTGATATGCCTCATTGTAATCAATGTTTATT
AGATCCAGATTTTTCAGTTATTATTAATTCAGATTTTAAGTCATCAGATTCATGTGGCAA
AGAAAATAAAAAACCTTGGTTAATTCCAGTTGCTGTCACTGTACCTGTTGTTGGTTGTGC
TTTAATAATTGCAGCATTCATGTTAAGAAAAAAGATTCATAGCAATAAAATACTTCTTAA
TAAATTTGGTGGTAAATAACTGAATAAAAATAATAAATAGNAATCGCATATTCCAAGA
Length of connected seq. 1308
Full length Seq ID -
Full length Seq. -
Length of full length seq. -