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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHO114
Library VH
(Link to library)
Clone ID VHO114
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16441-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHO114 (VHO114Q) /CSM/VH/VHO1-A/VHO114Q.Seq.d/
XXXXXXXXXXCTGCCACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATT
GTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTT
ATTGCTATTCTTGCTTTAGCTGATCTTGGTGGTTTTGGTTTCTACGTTTTTAAGAATCCA
GATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGT
GTTATCGGTATTAAACCAAACTCATTAGCTGATGATGAATTTGGTATTGCAAGNATGATG
ATGCTCAAATTTT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---ATQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILALADLGGFGFYVFKNPD
FKQKLLKMVGFSKVGPKYSVIGIKPNSLADDEFGIAXMMMLKF
Translated Amino Acid sequence (All Frames) 
Frame A:
---chtmcrwc*cnlftrdchvsikkffkwwqrldrwccycyscfs*swwfwflrf*esr
fqtkiikngwffkgrski*cyry*tklis***iwyckxddaqi


Frame B:
---ATQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILALADLGGFGFYVFKNPD
FKQKLLKMVGFSKVGPKYSVIGIKPNSLADDEFGIAXMMMLKF


Frame C:
---phnv*vvlmqlihqrlscvhqkilqvvakvgslvllllfll*lilvvlvstflriqi
snkny*kwlvfqrsvqnivlsvlnqth*lmmnlvlqx**csnf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO114 (VHO114Q) /CSM/VH/VHO1-A/VHO114Q.Seq.d/                        595   e-169
VHA706 (VHA706Q) /CSM/VH/VHA7-A/VHA706Q.Seq.d/                        571   e-162
CHC644 (CHC644Q) /CSM/CH/CHC6-B/CHC644Q.Seq.d/                        567   e-161
VHO273 (VHO273Q) /CSM/VH/VHO2-D/VHO273Q.Seq.d/                        565   e-160
VHJ874 (VHJ874Q) /CSM/VH/VHJ8-D/VHJ874Q.Seq.d/                        561   e-159
VSA811 (VSA811Q) /CSM/VS/VSA8-A/VSA811Q.Seq.d/                        561   e-159
VHQ495 (VHQ495Q) /CSM/VH/VHQ4-D/VHQ495Q.Seq.d/                        561   e-159
VHQ494 (VHQ494Q) /CSM/VH/VHQ4-D/VHQ494Q.Seq.d/                        561   e-159
VHQ426 (VHQ426Q) /CSM/VH/VHQ4-B/VHQ426Q.Seq.d/                        561   e-159
VHQ405 (VHQ405Q) /CSM/VH/VHQ4-A/VHQ405Q.Seq.d/                        561   e-159
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC137521|AC137521.21 Medicago truncatula clone mth2-11o9, WORKING DRAFT SEQUENCE, 11 ordered pieces.    40   0.10   3
AC118663|AC118663.1 Homo sapiens chromosome 7 clone RP11-98O9, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38   0.11   6
AL021493|AL021493.1 Caenorhabditis elegans YAC Y51A2B.             40   0.16   2
BI772838|BI772838.1 kp46c08.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:ATPB_CAEEL P46561 PROBABLE ATP SYNTHASE BETA CHAIN, MITOCHONDRIAL PRECURSOR ;, mRNA sequence.    34   0.22   2
AC108510|AC108510.3 Homo sapiens chromosome 7 clone RP11-98O9, complete sequence.    38   0.29   4
AR204346|AR204346.1 Sequence 242 from patent US 6365723.           46   0.29   1
AP002569|AP002569.1 Escherichia coli O157:H7 DNA, complete genome, section 20/20.    46   0.29   1
AC122183|AC122183.2 Mus musculus chromosome UNK clone RP23-14P23, WORKING DRAFT SEQUENCE, 4 unordered pieces.    46   0.29   1
BD184779|BD184779.1 Nucleic acid molecule and polypeptide specific to intestinal hemorrhagic pathogenic Escherichia coli O157:H7, and method of use thereof.    46   0.29   1
CC908412|CC908412.1 t042m10ba.r1 TAMBT Bos taurus genomic clone t042m10ba, genomic survey sequence.    46   0.29   1
dna update 2004. 3.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S69204(S69204) pheromone response factor 1 - smut fungus (Ustila...    32   7.0
protein update 2009. 3.16
PSORT 

 psg: 0.84  gvh: 0.61  alm: 0.25  top: 0.40  tms: 0.07  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.16  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for VHO114 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHO114Z
3' end seq. 
>VHO114Z.Seq
NNNNNNNNNNCTGCCACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATT
GTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTT
ATTGCTATTCTTGCTTTAGCTGATCTTGGTGGTTTTGGTTTCTACGTTTTTAAGAATCCA
GATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGT
GTTATCGGTATTAAACCAAACTCATTAGCTGATGATGAATTTGGTATTGCAAGNATGATG
ATGCTCAAATTTT
Length of 3' end seq. 313
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -