AFO710
Library AF
(Link to library)
Clone ID AFO710
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFO710E
(Link to Original site)
Representative DNA sequence
>AFO710 (AFO710Q) /CSM/AF/AFO7-A/AFO710Q.Seq.d/
AATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAATACCAACATG
AGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTATCAACAGTT
CATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTGATTGGCAT
AAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTGGTGATGAA
AATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCAGCTAAATTC
CCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGAATGAACAA
AAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATCAATCAGCA
TTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTGCCTCAAAG
AGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAAGAAATCAAC
AAAGTTGAAACCGATCAATTAACTCATCCAATACACTTTGGTCATTTCACCAGATAACAC
CTAACAAAGTACTCGTCGATAACAAAGAGATCCAAGCAGGGTAACCTCGCTGATGATTGG
GAATTACTTCCATCAAAACAAATCAAAGATCCAAAACAATCCAAACCAGTCGATTGGGTT
GACGTAAAGGAAATCGATGACCCAGAAGATGTTAAACCAGCCGGTCATGACGATATCCCA
GCTTCAATCGTTGATCCAGAAGCTGTCAAACCAGAGGATTGGAATGAAGAAGACGACGGT
GAATGGGAAGCCCCAACCATCGCCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAA
ATCCCAAATCCAGAATACAAAGGTGAATGGGTACACCCATTAATTGATAACCCAGAATAC
GCTGAAGACAATGAACTCTACCTCTTTAATGATCTCGGTGCTATCGGTTTCGAATTATGG
CAAGTTAAATCTGGTTCCATCTTTAACAATATGATCGTCACCGACTCTGTCGAAGAAGCT
AAAGATTTCTCTGAAAAGACCTTTGTTGCCAACCAAGAAGCCGAAAAGAAAATGTTTGAC
GACCTCGAAGCCGCCAAAGCTGAAGAGAGAAAGAAAGCTGACGAAAAATTAGCTGCCGAA
AAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAA
GATTTAGTTAAAACTGATGACAAAAAAGAAGAAGTCAAAAAATCAACCAAAAAAGTNATC
AGACGAACTTTAAANAAATAAATAAA
sequence update 2001. 6. 9
Translated Amino Acid sequence
nhhiynyiffv**krkntnmrlllcliflvfvfnfalstvhfkdtfdndwesrwvvsdwh
kedgksgklvhtagkwfgdenqkgiqtsedarfyavsakfpsfsnkgkdlvlqytvkneq
kvdcggsyikllpskldqsafdgeseysimfgpdvcgaskrvhvilnykgknhlikkein
kvetdqlthpihfghftr*HLTKYSSITKRSKQGNLADDWELLPSKQIKDPKQSKPVDWV
DVKEIDDPEDVKPAGHDDIPASIVDPEAVKPEDWNEEDDGEWEAPTIANPEYKGEWKAKK
IPNPEYKGEWVHPLIDNPEYAEDNELYLFNDLGAIGFELWQVKSGSIFNNMIVTDSVEEA
KDFSEKTFVANQEAEKKMFDDLEAAKAEERKKADEKLAAEKAAEKEAEEADEEEEEVAEE
DLVKTDDKKEEVKKSTKKVIRRTLXK*i


Translated Amino Acid sequence (All Frames)
Frame A:
nhhiynyiffv**krkntnmrlllcliflvfvfnfalstvhfkdtfdndwesrwvvsdwh
kedgksgklvhtagkwfgdenqkgiqtsedarfyavsakfpsfsnkgkdlvlqytvkneq
kvdcggsyikllpskldqsafdgeseysimfgpdvcgaskrvhvilnykgknhlikkein
kvetdqlthpihfghftr*HLTKYSSITKRSKQGNLADDWELLPSKQIKDPKQSKPVDWV
DVKEIDDPEDVKPAGHDDIPASIVDPEAVKPEDWNEEDDGEWEAPTIANPEYKGEWKAKK
IPNPEYKGEWVHPLIDNPEYAEDNELYLFNDLGAIGFELWQVKSGSIFNNMIVTDSVEEA
KDFSEKTFVANQEAEKKMFDDLEAAKAEERKKADEKLAAEKAAEKEAEEADEEEEEVAEE
DLVKTDDKKEEVKKSTKKVIRRTLXK*i


Frame B:
iiifiiisflfnkkeript*dfycv*fs*flfsilhyqqfiskiplitignqdgllvigi
kkmvnqvn*filqvnglvmkikkvfklvkmlvstlyqlnsqvsvtkvki*fsntl*rmnk
klivvvhtssyyhpn*inqhsmvnlniplclvqmfvvpqreftsfsttkerti*srkkst
klkpin*liqytlvispdnt*qstrr*qrdpsrvtslmignyfhqnkskiqnnpnqsigl
t*rksmtqkmlnqpvmtisqlqsliqklsnqrigmkkttvngkpqpspiqntkvngkqrk
sqiqntkvngyth*litqntlktmnstslmisvlsvsnygklnlvpslti*ssptlskkl
kislkrpllptkkpkrkclttskppklkrerkltkn*lpkkllkkkpkklmkkkkkslkk
i*lklmtkkkksknqpkkxsdel*xnk*


Frame C:
ssyl*lylfclikkkeyqhetfivfnflsfcfqfciinssfqryl**rlgikmgc**la*
rrw*ir*issycr*mvw**kskrysn**rcsflrcis*ipkfq*qr*rfsspihcke*tk
s*lwwfihqvitiqirsisirw*i*ifhyvwsrclwclkessrhsqlqrkepfnqernqq
s*nrsinssntlwsfhqitpnkvlvdnkeiqag*pr**lgitsiktnqrsktiqtsrlg*
rkgnr*prrc*tsrs*rypsfnr*srscqtrgle*rrrr*mgspnhrqsriqr*mesken
pksriqr*mgtpin**prir*rq*tlpl**srcyrfrimas*iwfhl*qydrhrlcrrs*
rfl*kdlccqprsrkenv*rprsrqs*rekes*rkiscrksc*krsrrs**rrrrsr*rr
fs*n**qkrrsqkinqksxqtnfkxink


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFO710 (AFO710Q) /CSM/AF/AFO7-A/AFO710Q.Seq.d/ 2081 0.0
AFO773 (AFO773Q) /CSM/AF/AFO7-D/AFO773Q.Seq.d/ 2042 0.0
AFO794 (AFO794Q) /CSM/AF/AFO7-D/AFO794Q.Seq.d/ 2038 0.0
AFN528 (AFN528Q) /CSM/AF/AFN5-B/AFN528Q.Seq.d/ 2034 0.0
AFK286 (AFK286Q) /CSM/AF/AFK2-D/AFK286Q.Seq.d/ 2034 0.0
AFE410 (AFE410Q) /CSM/AF/AFE4-A/AFE410Q.Seq.d/ 2034 0.0
AFE318 (AFE318Q) /CSM/AF/AFE3-A/AFE318Q.Seq.d/ 2034 0.0
AFE168 (AFE168Q) /CSM/AF/AFE1-C/AFE168Q.Seq.d/ 2034 0.0
AFD463 (AFD463Q) /CSM/AF/AFD4-C/AFD463Q.Seq.d/ 2034 0.0
AFJ570 (AFJ570Q) /CSM/AF/AFJ5-C/AFJ570Q.Seq.d/ 2028 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U36937|U36937.1 Dictyostelium discoideum calreticulin mRNA, complete cds. 1023 0.0 7
BD248385|BD248385.1 Gene participating in tolerance against environmental stress. 92 1e-27 4
BH160872|BH160872.1 ENTRI18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 80 1e-21 4
AZ543757|AZ543757.1 ENTGD24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 80 8e-11 1
BI921109|BI921109.1 EST541012 tomato callus Lycopersicon esculentum cDNA clone cLEC72A21 5' end, mRNA sequence. 74 9e-11 2
AW033447|AW033447.1 EST277018 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC28B21 similar to calreticulin, putative, mRNA sequence. 74 5e-09 1
AI489195|AI489195.1 EST247534 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED17D1, mRNA sequence. 74 5e-09 1
BE459798|BE459798.1 EST415090 tomato developing/immature green fruit Lycopersicon esculentum cDNA clone cLEM8G13, mRNA sequence. 74 5e-09 1
AI771812|AI771812.1 EST252912 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED38E1, mRNA sequence. 74 5e-09 1
BE435540|BE435540.1 EST406618 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG27F24, mRNA sequence. 74 5e-09 1
dna update 2003. 9.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U36937_1(U36937|pid:none) Dictyostelium discoideum calreticulin ... 627 e-178
AK318734_1(AK318734|pid:none) Arabidopsis thaliana AT1G56340 mRN... 385 e-105
AB196794_1(AB196794|pid:none) Glycine max Gm crt-1 mRNA for calr... 382 e-104
AF283816_1(AF283816|pid:none) Pinus taeda calreticulin mRNA, com... 382 e-104
(Q9XF98) RecName: Full=Calreticulin; Flags: Precursor; &AF13473... 381 e-104
(Q40401) RecName: Full=Calreticulin; Flags: Precursor; &T16968(... 381 e-104
EF085019_1(EF085019|pid:none) Picea sitchensis clone WS0297_I16 ... 380 e-104
EU984501_1(EU984501|pid:none) Nicotiana tabacum calreticulin mRN... 380 e-104
AC133339_28(AC133339|pid:none) Oryza sativa chromosome 3 BAC OSJ... 379 e-103
AY836753_1(AY836753|pid:none) Triticum aestivum calreticulin-lik... 374 e-102
protein update 2009. 6.29
PSORT

psg: 0.54 gvh: 0.22 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.36 mip: 0.03
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
16.0 %: mitochondrial
16.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for AFO710 is nuc

5' end seq. ID AFO710F
5' end seq.
>AFO710F.Seq
AATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAATACCAACATG
AGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTATCAACAGTT
CATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTGATTGGCAT
AAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTGGTGATGAA
AATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCAGCTAAATTC
CCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGAATGAACAA
AAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATCAATCAGCA
TTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTGCCTCAAAG
AGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAAGAAATCAAC
AAAGTTGAAACCGATCAATTAACTCATCAATACACTTTGGTCATTTCACCAGATAACACC
TACAAAGTACTCGTCGATAACAA----------
Length of 5' end seq. 623
3' end seq. ID AFO710Z
3' end seq.
>AFO710Z.Seq
----------TTAACTCATCCAATACACTTTGGTCATTTCACCAGATAACACCTAACAAA
GTACTCGTCGATAACAAAGAGATCCAAGCAGGGTAACCTCGCTGATGATTGGGAATTACT
TCCATCAAAACAAATCAAAGATCCAAAACAATCCAAACCAGTCGATTGGGTTGACGTAAA
GGAAATCGATGACCCAGAAGATGTTAAACCAGCCGGTCATGACGATATCCCAGCTTCAAT
CGTTGATCCAGAAGCTGTCAAACCAGAGGATTGGAATGAAGAAGACGACGGTGAATGGGA
AGCCCCAACCATCGCCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCCAAA
TCCAGAATACAAAGGTGAATGGGTACACCCATTAATTGATAACCCAGAATACGCTGAAGA
CAATGAACTCTACCTCTTTAATGATCTCGGTGCTATCGGTTTCGAATTATGGCAAGTTAA
ATCTGGTTCCATCTTTAACAATATGATCGTCACCGACTCTGTCGAAGAAGCTAAAGATTT
CTCTGAAAAGACCTTTGTTGCCAACCAAGAAGCCGAAAAGAAAATGTTTGACGACCTCGA
AGCCGCCAAAGCTGAAGAGAGAAAGAAAGCTGACGAAAAATTAGCTGCCGAAAAAGCTGC
TGAAAAAGAAGCCGAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAAGATTTAGT
TAAAACTGATGACAAAAAAGAAGAAGTCAAAAAATCAACCAAAAAAGTNATCAGACGAAC
TTTAAANAAATAAATAAA
Length of 3' end seq. 788
Connected seq. ID AFO710P
Connected seq.
>AFO710P.Seq
AATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAATACCAACATG
AGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTATCAACAGTT
CATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTGATTGGCAT
AAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTGGTGATGAA
AATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCAGCTAAATTC
CCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGAATGAACAA
AAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATCAATCAGCA
TTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTGCCTCAAAG
AGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAAGAAATCAAC
AAAGTTGAAACCGATCAATTAACTCATCAATACACTTTGGTCATTTCACCAGATAACACC
TACAAAGTACTCGTCGATAACAA----------TTAACTCATCCAATACACTTTGGTCAT
TTCACCAGATAACACCTAACAAAGTACTCGTCGATAACAAAGAGATCCAAGCAGGGTAAC
CTCGCTGATGATTGGGAATTACTTCCATCAAAACAAATCAAAGATCCAAAACAATCCAAA
CCAGTCGATTGGGTTGACGTAAAGGAAATCGATGACCCAGAAGATGTTAAACCAGCCGGT
CATGACGATATCCCAGCTTCAATCGTTGATCCAGAAGCTGTCAAACCAGAGGATTGGAAT
GAAGAAGACGACGGTGAATGGGAAGCCCCAACCATCGCCAATCCAGAATACAAAGGTGAA
TGGAAAGCAAAGAAAATCCCAAATCCAGAATACAAAGGTGAATGGGTACACCCATTAATT
GATAACCCAGAATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCTCGGTGCTATC
GGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGATCGTCACCGAC
TCTGTCGAAGAAGCTAAAGATTTCTCTGAAAAGACCTTTGTTGCCAACCAAGAAGCCGAA
AAGAAAATGTTTGACGACCTCGAAGCCGCCAAAGCTGAAGAGAGAAAGAAAGCTGACGAA
AAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAAGAAGAA
GAAGTCGCTGAAGAAGATTTAGTTAAAACTGATGACAAAAAAGAAGAAGTCAAAAAATCA
ACCAAAAAAGTNATCAGACGAACTTTAAANAAATAAATAAA
Length of connected seq. 1411
Full length Seq ID AFO710E
Full length Seq.
>AFO710E.Seq
AATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAATACCAACATG
AGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTATCAACAGTT
CATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTGATTGGCAT
AAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTGGTGATGAA
AATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCAGCTAAATTC
CCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGAATGAACAA
AAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATCAATCAGCA
TTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTGCCTCAAAG
AGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAAGAAATCAAC
AAAGTTGAAACCGATCAATTAACTCATCCAATACACTTTGGTCATTTCACCAGATAACAC
CTAACAAAGTACTCGTCGATAACAAAGAGATCCAAGCAGGGTAACCTCGCTGATGATTGG
GAATTACTTCCATCAAAACAAATCAAAGATCCAAAACAATCCAAACCAGTCGATTGGGTT
GACGTAAAGGAAATCGATGACCCAGAAGATGTTAAACCAGCCGGTCATGACGATATCCCA
GCTTCAATCGTTGATCCAGAAGCTGTCAAACCAGAGGATTGGAATGAAGAAGACGACGGT
GAATGGGAAGCCCCAACCATCGCCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAA
ATCCCAAATCCAGAATACAAAGGTGAATGGGTACACCCATTAATTGATAACCCAGAATAC
GCTGAAGACAATGAACTCTACCTCTTTAATGATCTCGGTGCTATCGGTTTCGAATTATGG
CAAGTTAAATCTGGTTCCATCTTTAACAATATGATCGTCACCGACTCTGTCGAAGAAGCT
AAAGATTTCTCTGAAAAGACCTTTGTTGCCAACCAAGAAGCCGAAAAGAAAATGTTTGAC
GACCTCGAAGCCGCCAAAGCTGAAGAGAGAAAGAAAGCTGACGAAAAATTAGCTGCCGAA
AAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAA
GATTTAGTTAAAACTGATGACAAAAAAGAAGAAGTCAAAAAATCAACCAAAAAAGTNATC
AGACGAACTTTAAANAAATAAATAAA
Length of full length seq. 1346