VHN889 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHN889
Library	VH (Link to library)
Clone ID	VHN889 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16260-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHN8-D/VHN889Q.Seq.d/
Representative seq. ID	VHN889P (Link to Original site)
Representative DNA sequence	>VHN889 (VHN889Q) /CSM/VH/VHN8-D/VHN889Q.Seq.d/ AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTNACAATCGATNAATTCG TGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCA CGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGT TTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCAT TAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGG TTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAG TTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGT CGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAA ACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGA AGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACAC TGAAXXXXXXXXXXCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCAC GAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCC AATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTC GTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGT ATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGT CAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACT CTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATT TACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCC CCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGAT TTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCA ATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGA AAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATT TAAGTCGCACTTNAGTTTTCAAANATAGAATCAAATCTAAAAAAAA
sequence update	2002.10.25
Translated Amino Acid sequence	tleckkskvqngFXNRXIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLSFRRAIESVNVIVGNTE--- ---KDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVG AFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLL EPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLR SHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLti*v alxfsxiesnlkk
Translated Amino Acid sequence (All Frames)	Frame A: nsrvqkkstkwlixqsxnschygpskyqkyvcycscrsrnhfirffnpkswyycrs fwyeiyvmsctrawyhhificitslrnakgrqitswlyftrifnqsyrfprsrfq frsnccppcywcfsryrlrrrclrtnrncitssrrtyqtslirqqsrsflirtpikh rslslfpsyirqchcwh--- ---qrskssclsr*prmgkchehlvfrsrrrcqsprqchqrcsifenrffrw cfpmghqrrccl*kherypfqslchpphchpqrwwsnhpncssctlccinclpnsl rtnllsrnycprkrywwyllctqssrycywrtsyrfpiilcqssftsirilrfhrft fphcrssfptmclrslgfnwccqqreshsrfshqkekrfsprnprsqiprktlnnls rtxvfkxrikskk Frame B: tleckkskvqngFXNRXIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLSFRRAIESVNVIVGNTE--- ---KDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVG AFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLL EPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLR SHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLtiv alxfsxiesnlkk Frame C: lssakkvkykmvnxtidxfvplwtvvkiseicllllmsitvkplyqilskelvllpikf lvidichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnfsilsipqvtlisv qkllpsvllmvlslsiaskvfaykpklyyvkpslnvsnqsysstksivsynsntlk klislsvellnpsmsllvtl--- ---kmiqklvltislittngikmmptfglsvqkvtvpisssmspkvfnimklkilslv lsngppkkvlfvmktevsvsifmmspstlmpstevvvkssqllvvysmllnlppqls* nqst*kllpqktllvvftlysivvevlllvknvvsvphyslskliyqynpsvspliyv ptlpvklshnvssiiglqlvlstkirkplkslpperekvpqksqiltnstknskqfks hxsfqxnqikk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHN889 (VHN889Q) /CSM/VH/VHN8-D/VHN889Q.Seq.d/ 2569 0.0 VHP730 (VHP730Q) /CSM/VH/VHP7-B/VHP730Q.Seq.d/ 1463 0.0 VHP357 (VHP357Q) /CSM/VH/VHP3-C/VHP357Q.Seq.d/ 1463 0.0 VHK894 (VHK894Q) /CSM/VH/VHK8-D/VHK894Q.Seq.d/ 1463 0.0 VHK162 (VHK162Q) /CSM/VH/VHK1-C/VHK162Q.Seq.d/ 1463 0.0 VHJ786 (VHJ786Q) /CSM/VH/VHJ7-D/VHJ786Q.Seq.d/ 1463 0.0 VHJ695 (VHJ695Q) /CSM/VH/VHJ6-D/VHJ695Q.Seq.d/ 1463 0.0 VHJ691 (VHJ691Q) /CSM/VH/VHJ6-D/VHJ691Q.Seq.d/ 1463 0.0 VHJ323 (VHJ323Q) /CSM/VH/VHJ3-A/VHJ323Q.Seq.d/ 1463 0.0 VHI690 (VHI690Q) /CSM/VH/VHI6-D/VHI690Q.Seq.d/ 1463 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446334) Dictyostelium discoideum cDNA clone:ddv62l07, 3' ... 1463 0.0 1 (BJ446055) Dictyostelium discoideum cDNA clone:ddv61b15, 3' ... 1463 0.0 1 (BJ445199) Dictyostelium discoideum cDNA clone:ddv58b24, 3' ... 1463 0.0 1 (BJ443434) Dictyostelium discoideum cDNA clone:ddv52l24, 3' ... 1463 0.0 1 (BJ443011) Dictyostelium discoideum cDNA clone:ddv51k15, 3' ... 1463 0.0 1 (BJ442773) Dictyostelium discoideum cDNA clone:ddv50m24, 3' ... 1463 0.0 1 (BJ442764) Dictyostelium discoideum cDNA clone:ddv50l21, 3' ... 1463 0.0 1 (BJ442731) Dictyostelium discoideum cDNA clone:ddv50e24, 3' ... 1463 0.0 1 (BJ442218) Dictyostelium discoideum cDNA clone:ddv49n05, 3' ... 1463 0.0 1 (BJ442075) Dictyostelium discoideum cDNA clone:ddv48c24, 3' ... 1463 0.0 1
dna update	2008.12. 8
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AY391422_1(AY391422\|pid:none) Danio rerio eukaryotic translation... 300 8e-80 AY069933_1(AY069933\|pid:none) Rana sylvatica eukaryotic translat... 298 2e-79 BT071866_1(BT071866\|pid:none) Salmo salar clone ssal-rgf-501-088... 295 2e-78 BT059038_1(BT059038\|pid:none) Salmo salar clone ssal-rgf-521-328... 295 2e-78 BC089730_1(BC089730\|pid:none) Xenopus tropicalis MGC108369 prote... 295 3e-78 BT045031_1(BT045031\|pid:none) Salmo salar clone ssal-rgf-510-120... 295 3e-78 BC060707_1(BC060707\|pid:none) Mus musculus eukaryotic translatio... 295 3e-78 AK161993_1(AK161993\|pid:none) Mus musculus 12 days embryo male w... 295 3e-78 AK032997_1(AK032997\|pid:none) Mus musculus 12 days embryo male w... 295 3e-78 (P05197) RecName: Full=Elongation factor 2; Short=EF-2;... 295 3e-78
protein update	2009. 7.18
PSORT	psg: 0.25 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.41 mip: 0.03 nuc: 0.04 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 64.0 %: cytoplasmic 32.0 %: nuclear 4.0 %: mitochondrial >> prediction for VHN889 is cyt
5' end seq. ID	VHN889F
5' end seq.	>VHN889F.Seq AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTNACAATCGATNAATTCG TGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCA CGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGT TTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCAT TAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGG TTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAG TTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGT CGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAA ACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGA AGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACAC TGAANNNNNNNNNN
Length of 5' end seq.	614
3' end seq. ID	VHN889Z
3' end seq.	>VHN889Z.Seq NNNNNNNNNNCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCACGAAT GGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATC TCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTG GTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCC GTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAA TCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCT TAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACT CTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCAT TATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTAC GTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTG GTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAG GTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAG TCGCACTTNAGTTTTCAAANATAGAATCAAATCTAAAAAAAA
Length of 3' end seq.	762
Connected seq. ID	VHN889P
Connected seq.	>VHN889P.Seq AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTNACAATCGATNAATTCG TGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCA CGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGT TTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCAT TAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGG TTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAG TTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGT CGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAA ACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGA AGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACAC TGAA----------CAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCAC GAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCC AATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTC GTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGT ATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGT CAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACT CTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATT TACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCC CCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGAT TTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCA ATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGA AAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATT TAAGTCGCACTTNAGTTTTCAAANATAGAATCAAATCTAAAAAAAA
Length of connected seq.	1356
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas