AFO706
Library AF
(Link to library)
Clone ID AFO706
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16294-1
Original site URL
Representative seq. ID AFO706P
(Link to Original site)
Representative DNA sequence
>AFO706 (AFO706Q) /CSM/AF/AFO7-A/AFO706Q.Seq.d/
ATTTTATTTTCCAATTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGT
TAAAGAATTTAGTAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATAT
TGAAATTCCAAATCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGA
AGAAGCAATTCAATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATG
TGAAATTAAAAGAATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAA
AACTGAAAAAGTTAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCAC
TGATGCATGGGATGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTA
TGGTCGTGGTGGTGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGC
ATTGCAAGAACAATCAATTCCACATGATCGTTATGTAATTATCATTGAAGGTTCCGAAGA
ATCTGGTTCAATCCATTTACCACAATATGTTGAGAAGTTCCAAGCTGAAATTCAAATTCC
ATCATTGGTAGTTTGCTTAGATXXXXXXXXXXAAGCATGTCATTCCGGTAGTGCCTCTGG
TATCGTTCCATCTTCATTCCGTATTCTTCGTCAAGTTTTAGATCGTGCTGAAAATCAATT
AACTGGTGAAGTCGATAAAAGATTACACGTTGAAATTCCACAACATCGTTTAGATCAAAT
CGCAAAATGTGCTGAAATTTTAGGCGAAACCATCTATGATGAATTCTCATGGTACAAAAA
TACCACTCCAGTCACTAAAGATTTAACCCAATTGATGATCAACAAAACTTGGTATCCAAC
TATTTGCATCACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATGTCATGAG
AACTCACACCACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGC
ATCAACTGTATTAAAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGAAGTTACCTT
CAAAATGGATAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAATTAGAAAA
AGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGG
TGGTTCCATCCCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTATCGTTAC
TGGTTTATTAGGTCCAGGTTCAAATGCTCATGGTCCAAATGAATTCTTAGATATTCCATT
TGCCAAGAAATTATTAAGTTGTGTTATTTATTTATTAGATGCTCATTCCAAGTTNATTAA
ATAAATAAACCT
sequence update 2001. 6. 1
Translated Amino Acid sequence
FYFPIDKIKLNKMSLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYTE
EAIQLLEKWILAQGIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLT
DAWDEGLHPYKAVIKNNKLYGRGGADDGYSTFASISAIKALQEQSIPHDRYVIIIEGSEE
SGSIHLPQYVEKFQAEIQIPSLVVCLD---

---ACHSGSASGIVPSSFRILRQVLDRAENQLTGEVDKRLHVEIPQHRLDQIAKCAEILG
ETIYDEFSWYKNTTPVTKDLTQLMINKTWYPTICITGAEGIPHTSNAGNVMRTHTTVKVS
VRLPPSFKAADASTVLKEIFETNPPYGAEVTFKMDKCASGWDSPQTRPELEKALGEASNL
FFGKDHVYMGEGGSIPFMKMLHDRFNCQFIVTGLLGPGSNAHGPNEFLDIPFAKKLLSCV
IYLLDAHSKXIK*in


Translated Amino Acid sequence (All Frames)
Frame A:
ilfsn**n*ik*nviky*ks*ri***smg*kyftntfkiy*nsksitii*crmgnqwlyr
rsnsiiremdlstryqryfm*n*kn*rintnyfhgsrsnqn*ks*nctfiwshg*tttth
*cmg*ritsiqsshqe*qtlwswwcr*wlfnicfnlcnqsiartinst*slcnyh*rfrr
iwfnpfttic*evps*nsnsiigsllr---

---khvipvvplvsfhlhsvffvkf*ivlkin*lvksikdytlkfhniv*iksqnvlkf*
akpsmmnshgtkiplqslki*pn**stklgiqlfaspvlkvfhtlqmlvms*eltpplkl
vfvyhhhskqlmhqly*kkfsklihhmvlklpskwinvlqvgihhkldqn*kkh*eklqi
fslakttytwvkvvpshs*kcymtvsivnlsllvy*vqvqmlmvqmns*ifhlprny*vv
lfiy*mlipsxlnk*t

Frame B:
FYFPIDKIKLNKMSLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYTE
EAIQLLEKWILAQGIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLT
DAWDEGLHPYKAVIKNNKLYGRGGADDGYSTFASISAIKALQEQSIPHDRYVIIIEGSEE
SGSIHLPQYVEKFQAEIQIPSLVVCLD---

---smsfr*clwyrsifipyssssfrsc*ksinw*sr*kitr*nsttsfrsnrkmc*nfr
rnhl**ilmvqkyhssh*rfnpiddqqnlvsnylhhrc*rysthfkcw*chenshhr*s*
csfttiiqss*cincikrnfrn*stiwc*sylqng*mcfrlgfttn*trirksirrsfks
flwqrprihg*rwfhpihenvt*pfqlsiyrywfirsrfkcswsk*ilrysicqeiiklc
ylfircsfqvx*inkp

Frame C:
fifqlikln*ikch*ilkklknlvikhgmkifyqhfqnilkfqinhhymmqngqpmviqk
kqfny*rngs*hkvskvfhvklkelkd*hqlfsw*skqpklkklklyfymvtwinnhhsl
mhgmkdyihtkqssritnsmvvvvqmmviqhllqslqskhcknnqfhmivm*lslkvpkn
lvqsiyhnmlrssklkfkfhhw*fa*---

---ACHSGSASGIVPSSFRILRQVLDRAENQLTGEVDKRLHVEIPQHRLDQIAKCAEILG
ETIYDEFSWYKNTTPVTKDLTQLMINKTWYPTICITGAEGIPHTSNAGNVMRTHTTVKVS
VRLPPSFKAADASTVLKEIFETNPPYGAEVTFKMDKCASGWDSPQTRPELEKALGEASNL
FFGKDHVYMGEGGSIPFMKMLHDRFNCQFIVTGLLGPGSNAHGPNEFLDIPFAKKLLSCV
IYLLDAHSKXIK*in

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFO706 (AFO706Q) /CSM/AF/AFO7-A/AFO706Q.Seq.d/ 2567 0.0
AFL825 (AFL825Q) /CSM/AF/AFL8-B/AFL825Q.Seq.d/ 1501 0.0
VFC720 (VFC720Q) /CSM/VF/VFC7-A/VFC720Q.Seq.d/ 1493 0.0
AFC812 (AFC812Q) /CSM/AF/AFC8-A/AFC812Q.Seq.d/ 1493 0.0
AFH725 (AFH725Q) /CSM/AF/AFH7-B/AFH725Q.Seq.d/ 1485 0.0
AFM302 (AFM302Q) /CSM/AF/AFM3-A/AFM302Q.Seq.d/ 1483 0.0
VSD127 (VSD127Q) /CSM/VS/VSD1-B/VSD127Q.Seq.d/ 1479 0.0
CFJ404 (CFJ404Q) /CSM/CF/CFJ4-A/CFJ404Q.Seq.d/ 1473 0.0
AHL611 (AHL611Q) /CSM/AH/AHL6-A/AHL611Q.Seq.d/ 1471 0.0
VFI168 (VFI168Q) /CSM/VF/VFI1-C/VFI168Q.Seq.d/ 1459 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC137602|AC137602.12 Medicago truncatula clone mth2-14k4, complete sequence. 46 0.21 4
BI435853|BI435853.1 EST538614 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCCL22 5' sequence, mRNA sequence. 48 0.30 1
BG591390|BG591390.1 EST499232 P. infestans-challenged leaf Solanum tuberosum cDNA clone BPLI8D17 5' sequence, mRNA sequence. 48 0.30 1
BQ112173|BQ112173.1 EST597749 mixed potato tissues Solanum tuberosum cDNA clone STMCF59 3' end, mRNA sequence. 48 0.30 1
BI435340|BI435340.1 EST538101 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCCD08 5' sequence, mRNA sequence. 48 0.30 1
BI435717|BI435717.1 EST538478 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCCI86 5' sequence, mRNA sequence. 48 0.30 1
BI433279|BI433279.1 EST536040 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCBC62 5' sequence, mRNA sequence. 48 0.30 1
BQ046631|BQ046631.1 EST595749 P. infestans-challenged potato leaf, incompatible reaction Solanum tuberosum cDNA clone BPLI15C18 5' end, mRNA sequence. 48 0.30 1
CD821342|CD821342.1 BN25.041I21F011127 BN25 Brassica napus cDNA clone BN25041I21, mRNA sequence. 38 0.58 2
CC535979|CC535979.1 CH240_414D20.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_414D20, genomic survey sequence. 36 0.66 2
dna update 2003. 9.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM743169_1072(AM743169|pid:none) Stenotrophomonas maltophilia K2... 414 e-114
CP001111_978(CP001111|pid:none) Stenotrophomonas maltophilia R55... 412 e-113
AE008923_2905(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 409 e-113
CP000113_526(CP000113|pid:none) Myxococcus xanthus DK 1622, comp... 405 e-111
AM746676_157(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ... 394 e-108
CP000733_1810(CP000733|pid:none) Coxiella burnetii Dugway 5J108-... 373 e-102
AE016828_97(AE016828|pid:none) Coxiella burnetii RSA 493, comple... 372 e-101
CP001020_1727(CP001020|pid:none) Coxiella burnetii CbuK_Q154, co... 369 e-100
CP000267_395(CP000267|pid:none) Rhodoferax ferrireducens T118, c... 358 2e-97
CP001013_323(CP001013|pid:none) Leptothrix cholodnii SP-6, compl... 357 7e-97
protein update 2009. 4.26
PSORT

psg: 0.70 gvh: 0.29 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
16.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for AFO706 is cyt

5' end seq. ID AFO706F
5' end seq.
>AFO706F.Seq
ATTTTATTTTCCAATTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGT
TAAAGAATTTAGTAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATAT
TGAAATTCCAAATCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGA
AGAAGCAATTCAATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATG
TGAAATTAAAAGAATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAA
AACTGAAAAAGTTAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCAC
TGATGCATGGGATGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTA
TGGTCGTGGTGGTGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGC
ATTGCAAGAACAATCAATTCCACATGATCGTTATGTAATTATCATTGAAGGTTCCGAAGA
ATCTGGTTCAATCCATTTACCACAATATGTTGAGAAGTTCCAAGCTGAAATTCAAATTCC
ATCATTGGTAGTTTGCTTAGAT----------
Length of 5' end seq. 622
3' end seq. ID AFO706Z
3' end seq.
>AFO706Z.Seq
----------AAGCATGTCATTCCGGTAGTGCCTCTGGTATCGTTCCATCTTCATTCCGT
ATTCTTCGTCAAGTTTTAGATCGTGCTGAAAATCAATTAACTGGTGAAGTCGATAAAAGA
TTACACGTTGAAATTCCACAACATCGTTTAGATCAAATCGCAAAATGTGCTGAAATTTTA
GGCGAAACCATCTATGATGAATTCTCATGGTACAAAAATACCACTCCAGTCACTAAAGAT
TTAACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTTGCATCACCGGTGCTGAA
GGTATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTCACACCACCGTTAAAGTT
AGTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAACTGTATTAAAAGAAATT
TTCGAAACTAATCCACCATATGGTGCTGAAGTTACCTTCAAAATGGATAAATGTGCTTCA
GGTTGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCATTAGGAGAAGCTTCAAAT
CTTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTTCCATCCCATTCATGAAA
ATGTTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTTTATTAGGTCCAGGTTCA
AATGCTCATGGTCCAAATGAATTCTTAGATATTCCATTTGCCAAGAAATTATTAAGTTGT
GTTATTTATTTATTAGATGCTCATTCCAAGTTNATTAAATAAATAAACCT
Length of 3' end seq. 760
Connected seq. ID AFO706P
Connected seq.
>AFO706P.Seq
ATTTTATTTTCCAATTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGT
TAAAGAATTTAGTAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATAT
TGAAATTCCAAATCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGA
AGAAGCAATTCAATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATG
TGAAATTAAAAGAATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAA
AACTGAAAAAGTTAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCAC
TGATGCATGGGATGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTA
TGGTCGTGGTGGTGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGC
ATTGCAAGAACAATCAATTCCACATGATCGTTATGTAATTATCATTGAAGGTTCCGAAGA
ATCTGGTTCAATCCATTTACCACAATATGTTGAGAAGTTCCAAGCTGAAATTCAAATTCC
ATCATTGGTAGTTTGCTTAGAT----------AAGCATGTCATTCCGGTAGTGCCTCTGG
TATCGTTCCATCTTCATTCCGTATTCTTCGTCAAGTTTTAGATCGTGCTGAAAATCAATT
AACTGGTGAAGTCGATAAAAGATTACACGTTGAAATTCCACAACATCGTTTAGATCAAAT
CGCAAAATGTGCTGAAATTTTAGGCGAAACCATCTATGATGAATTCTCATGGTACAAAAA
TACCACTCCAGTCACTAAAGATTTAACCCAATTGATGATCAACAAAACTTGGTATCCAAC
TATTTGCATCACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATGTCATGAG
AACTCACACCACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGC
ATCAACTGTATTAAAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGAAGTTACCTT
CAAAATGGATAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAATTAGAAAA
AGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGG
TGGTTCCATCCCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTATCGTTAC
TGGTTTATTAGGTCCAGGTTCAAATGCTCATGGTCCAAATGAATTCTTAGATATTCCATT
TGCCAAGAAATTATTAAGTTGTGTTATTTATTTATTAGATGCTCATTCCAAGTTNATTAA
ATAAATAAACCT
Length of connected seq. 1382
Full length Seq ID -
Full length Seq. -
Length of full length seq. -