VHN855
Library VH
(Link to library)
Clone ID VHN855
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHN855P
(Link to Original site)
Representative DNA sequence
>VHN855 (VHN855Q) /CSM/VH/VHN8-C/VHN855Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTNACAATCGATNAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGXXXXXXXXXXCTATCTCGCTGATAACCACGAATGGGATAAAAATGATGCCATGA
ACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAG
GTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCA
AAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCA
CCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTG
TACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAG
AAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAG
GTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATT
TACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAG
CTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGA
AAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAG
ATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTNAGTTTTCAAANA
TAGAATCAAATCTAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNXTIDXIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVGNTE---

---YLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEG
VVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEIT
APENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFP
QCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*ti*valxfsxies
nlkk


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlixqsxkfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tl
kklislsvellnpsmsllvtlk---

---lsr**prmg*k*chehlvfrsrr*rcqsprqchqrcsife*n*rffrwcfpmghqrr
ccl**kherypfqsl*chpph*chpqrwwsnhpncssctlcc*inclpnslrtnllsrny
cprkrywwyllctqss*rycyw*rtsyrfpiilcqssftsirilrfhr*ftfphcrssfp
tmclrslgfnwccqqr*esh*srfshqkekrfsprnprs*qiprktlnnlsrtxvfkxri
kskk

Frame B:
tleckkskvqng*fxnrxnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*
rslslfp*sy*irqchcw*h*---

---YLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEG
VVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEIT
APENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFP
QCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*ti*valxfsxies
nlkk

Frame C:
LSSAKKVKYKMVNXTIDXIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVGNTE---

---islittngikmmp*tfglsvqkvtvpisssmspkvfni*mklkilslvlsngppkkv
lfvmkt*evsvsifmmspstlmpstevvvkssqllvvysmlln*lppqls*nqst**kll
pqktllvvftlysivvevlllvknvvsvphyslskliyqy*npsvspliyvptlpvklsh
nvssiiglqlvlstkirkplksl*pperekv*pqksqiltnstknskqfkshxsfqx*nq
i*kk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHN855 (VHN855Q) /CSM/VH/VHN8-C/VHN855Q.Seq.d/ 2520 0.0
VHQ293 (VHQ293Q) /CSM/VH/VHQ2-D/VHQ293Q.Seq.d/ 1409 0.0
VHP730 (VHP730Q) /CSM/VH/VHP7-B/VHP730Q.Seq.d/ 1409 0.0
VHP357 (VHP357Q) /CSM/VH/VHP3-C/VHP357Q.Seq.d/ 1409 0.0
VHN889 (VHN889Q) /CSM/VH/VHN8-D/VHN889Q.Seq.d/ 1409 0.0
VHK894 (VHK894Q) /CSM/VH/VHK8-D/VHK894Q.Seq.d/ 1409 0.0
VHK162 (VHK162Q) /CSM/VH/VHK1-C/VHK162Q.Seq.d/ 1409 0.0
VHJ786 (VHJ786Q) /CSM/VH/VHJ7-D/VHJ786Q.Seq.d/ 1409 0.0
VHJ695 (VHJ695Q) /CSM/VH/VHJ6-D/VHJ695Q.Seq.d/ 1409 0.0
VHJ691 (VHJ691Q) /CSM/VH/VHJ6-D/VHJ691Q.Seq.d/ 1409 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ446797) Dictyostelium discoideum cDNA clone:ddv63i24, 3' ... 1409 0.0 1
(BJ446334) Dictyostelium discoideum cDNA clone:ddv62l07, 3' ... 1409 0.0 1
(BJ446055) Dictyostelium discoideum cDNA clone:ddv61b15, 3' ... 1409 0.0 1
(BJ445199) Dictyostelium discoideum cDNA clone:ddv58b24, 3' ... 1409 0.0 1
(BJ445176) Dictyostelium discoideum cDNA clone:ddv58n14, 3' ... 1409 0.0 1
(BJ443434) Dictyostelium discoideum cDNA clone:ddv52l24, 3' ... 1409 0.0 1
(BJ443011) Dictyostelium discoideum cDNA clone:ddv51k15, 3' ... 1409 0.0 1
(BJ442773) Dictyostelium discoideum cDNA clone:ddv50m24, 3' ... 1409 0.0 1
(BJ442764) Dictyostelium discoideum cDNA clone:ddv50l21, 3' ... 1409 0.0 1
(BJ442731) Dictyostelium discoideum cDNA clone:ddv50e24, 3' ... 1409 0.0 1
dna update 2008.12. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB171046_1(AB171046|pid:none) Macaca fascicularis brain cDNA clo... 433 e-120
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 294 4e-78
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 291 3e-77
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088... 290 8e-77
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 290 8e-77
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 290 1e-76
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 289 1e-76
BT072304_1(BT072304|pid:none) Salmo salar clone ssal-rgf-520-280... 289 2e-76
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 287 5e-76
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 287 5e-76
protein update 2009. 5.18
PSORT

psg: 0.72 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHN855 is cyt

5' end seq. ID VHN855F
5' end seq.
>VHN855F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTNACAATCGATNAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGNNNNNNNNNN
Length of 5' end seq. 616
3' end seq. ID VHN855Z
3' end seq.
>VHN855Z.Seq
NNNNNNNNNNCTATCTCGCTGATAACCACGAATGGGATAAAAATGATGCCATGAACATTT
GGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTC
AATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAG
GTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCC
ACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCT
ATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTA
CTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTG
TTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAG
TATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCC
CACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCA
CTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTG
ACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTNAGTTTTCAAANATAGAAT
CAAATCTAAAAAAAA
Length of 3' end seq. 735
Connected seq. ID VHN855P
Connected seq.
>VHN855P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTNACAATCGATNAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAG----------CTATCTCGCTGATAACCACGAATGGGATAAAAATGATGCCATGA
ACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAG
GTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCA
AAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCA
CCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTG
TACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAG
AAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAG
GTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATT
TACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAG
CTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGA
AAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAG
ATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTNAGTTTTCAAANA
TAGAATCAAATCTAAAAAAAA
Length of connected seq. 1331
Full length Seq ID -
Full length Seq. -
Length of full length seq. -