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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFB732
Library AF
(Link to library)
Clone ID AFB732
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFB732P
(Link to Original site)
Representative DNA sequence 
>AFB732 (AFB732Q) /CSM/AF/AFB7-B/AFB732Q.Seq.d/
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTTT
TTTTTNANTTTTTTTNNGGGGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN
NNNNANNGNNTTTTTTTTTTNNGNAAAAAAAAAAAAAAANGGGGNTTTTTTNTTTTTTTT
TNCCCCCCCCCCCCCNNAAAAAAAAXXXXXXXXXXTTGATATACCAATTCATGTCGATGC
AGCAAGTGGTGGTTTCGTTGCACCCTTTCTTCAACCAGAAATTGTTTGGGATTTTAGACT
ACCACGTGTTAAATCAATTAATGGCTCTGGTCATAAATTTGGTCTATCTCCATTGGGAGT
TGGCTGGGTCGTATGGAGAGGTAAAAATGACATTCACAAGGATTTGGTATTCGATGTCAA
ATCTTGGTGGCAATATGCCAACATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAG
TATGCCAGTACTATAACTTTTTGCGCCATGGTCGTAGTGGATATACCGCAGTTCATCAAG
CTTGTCTAGATCATGGTATTTTCATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATA
TTGTTTATGATGGTACTGGTGCACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAA
AAGTAAAATTCAATCTCTTTGACCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTG
CATCCTATACTCTACCAAACTTACCAGATATTGTAGTTCAAAGAGTATTAATTAGACATG
GTTTCAGTCATGATATGGCAATG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
LKKKKKKKKKKKKKKKIFFFFXXFFXGGGKKKKKKKKKKXXXXXFFXXKKKKKXGFFXFF
XPPPPXKK---

---LIYQFMSMQQVVVSLHPFFNQKLFGILDYHVLNQLMALVINLVYLHWELAGSYGEVK
MTFTRIWYSMSNLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFI
SKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNLP
DIVVQRVLIRHGFSHDMAM
Translated Amino Acid sequence (All Frames) 
Frame A:
LKKKKKKKKKKKKKKKIFFFFXXFFXGGGKKKKKKKKKKXXXXXFFXXKKKKKXGFFXFF
XPPPPXKK---

---LIYQFMSMQQVVVSLHPFFNQKLFGILDYHVLNQLMALVINLVYLHWELAGSYGEVK
MTFTRIWYSMSNLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFI
SKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNLP
DIVVQRVLIRHGFSHDMAM

Frame B:
*kkkkkkkkkkkkkkkfffffxxfxxggekkkkkkkkkkxxxxfffxxkkkkxgxfxfff
xppppxkk---

---*ytnscrcskwwfrctlsstrnclgf*tttc*in*wlws*iwsisigswlgrmer*k
*hsqgfgircqilvaicqhfh*ishvqvvk*yastitfcamvvvdipqfiklv*imvfsf
psklkntvflilfmmvlvhfqvhvgn*kkmqk*nsisltfqie*eievgklhpilyqtyq
il*fkey*ldmvsvmiwq

Frame C:
kkkkkkkkkkkkkkknfffffxffxgggkkkkkkkkkkkxxxxfffxxkkkkxgxfxffx
ppppxkk---

---dipihvdaasggfvapflqpeivwdfrlprvksingsghkfglsplgvgwvvwrgkn
dihkdlvfdvkswwqyanifiefltsrwsnsmpvl*lfapws*wiyrsssslsrswyfhf
qas*ktryf*ycl*wywctsrcmleiekrckskiqsl*pfr*nek*rlancilystkltr
ycssksin*twfqs*ygn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFB732 (AFB732Q) /CSM/AF/AFB7-B/AFB732Q.Seq.d/                       1166   0.0
SLB722 (SLB722Q) /CSM/SL/SLB7-A/SLB722Q.Seq.d/                       1148   0.0
SFL288 (SFL288Q) /CSM/SF/SFL2-D/SFL288Q.Seq.d/                       1148   0.0
SFK622 (SFK622Q) /CSM/SF/SFK6-A/SFK622Q.Seq.d/                       1148   0.0
SFG840 (SFG840Q) /CSM/SF/SFG8-B/SFG840Q.Seq.d/                       1148   0.0
SFD593 (SFD593Q) /CSM/SF/SFD5-D/SFD593Q.Seq.d/                       1148   0.0
SFD334 (SFD334Q) /CSM/SF/SFD3-B/SFD334Q.Seq.d/                       1148   0.0
CHC349 (CHC349Q) /CSM/CH/CHC3-C/CHC349Q.Seq.d/                       1148   0.0
CFJ215 (CFJ215Q) /CSM/CF/CFJ2-A/CFJ215Q.Seq.d/                       1148   0.0
CFH535 (CFH535Q) /CSM/CF/CFH5-B/CFH535Q.Seq.d/                       1148   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BG138757|BG138757.1 EST479199 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP11A1 5' sequence, mRNA sequence.    66  2e-08  2
AW622257|AW622257.1 EST313055 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX14P1 5', mRNA sequence.    66  7e-07  1
CA813481|CA813481.1 CA48LN10IF-E8 Cabernet Sauvignon Leaf - CA48LN Vitis vinifera cDNA clone CA48LN10IF-E8 5', mRNA sequence.    64  3e-06  1
CD719214|CD719214.1 VVB158G03_410335 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB158G03 5, mRNA sequence.    64  3e-06  1
CD008053|CD008053.1 VVB082D05_335234 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB082D05 5, mRNA sequence.    64  3e-06  1
CD006712|CD006712.1 VVB066D06_332552 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB066D06 5, mRNA sequence.    64  3e-06  1
CB341828|CB341828.2 CA32EN0002_IIIbF_E01 Cabernet Sauvignon Leaf - CA32EN Vitis vinifera cDNA clone CA32EN0002_IIIbF_E01 5', mRNA sequence.    64  3e-06  1
CB910900|CB910900.1 VVD157G07_379711 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVD157G07 5, mRNA sequence.    64  3e-06  1
AC126787|AC126787.12 Medicago truncatula clone mth2-11c8, complete sequence.    64  4e-06  3
AF352732|AF352732.1 Nicotiana tabacum glutamate decarboxylase isozyme 3 mRNA, complete cds.    58  1e-05  2
dna update 2003. 7.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ...   177   3e-72
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom...   175   3e-71
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch...   171   2e-70
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp...   167   4e-70
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345...   169   1e-69
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ...   166   8e-67
CP000439_1647(CP000439|pid:none) Francisella tularensis subsp. n...   155   7e-65
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320...   157   3e-64
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul...   155   5e-64
AY967181_1(AY967181|pid:none) Synthetic construct isolate FTT172...   149   4e-63
protein update 2009. 3.27
PSORT 

 psg: 0.41  gvh: 0.54  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 1.25  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for AFB732 is nuc
5' end seq. ID AFB732F
5' end seq. 
>AFB732F.Seq
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTTT
TTTTTNANTTTTTTTNNGGGGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN
NNNNANNGNNTTTTTTTTTTNNGNAAAAAAAAAAAAAAANGGGGNTTTTTTNTTTTTTTT
TNCCCCCCCCCCCCCNNAAAAAAAA----------
Length of 5' end seq. 205
3' end seq. ID AFB732Z
3' end seq. 
>AFB732Z.Seq
----------TTGATATACCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACCC
TTTCTTCAACCAGAAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGC
TCTGGTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAA
AATGACATTCACAAGGATTTGGTATTCGATGTCAAATCTTGGTGGCAATATGCCAACATT
TTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCG
CCATGGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCAT
TTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACT
TCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCT
TTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACC
AGATATTGTAGTTCAAAGAGTATTAATTAGACATGGTTTCAGTCATGATATGGCAATG
Length of 3' end seq. 588
Connected seq. ID AFB732P
Connected seq. 
>AFB732P.Seq
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTTT
TTTTTNANTTTTTTTNNGGGGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN
NNNNANNGNNTTTTTTTTTTNNGNAAAAAAAAAAAAAAANGGGGNTTTTTTNTTTTTTTT
TNCCCCCCCCCCCCCNNAAAAAAAA----------TTGATATACCAATTCATGTCGATGC
AGCAAGTGGTGGTTTCGTTGCACCCTTTCTTCAACCAGAAATTGTTTGGGATTTTAGACT
ACCACGTGTTAAATCAATTAATGGCTCTGGTCATAAATTTGGTCTATCTCCATTGGGAGT
TGGCTGGGTCGTATGGAGAGGTAAAAATGACATTCACAAGGATTTGGTATTCGATGTCAA
ATCTTGGTGGCAATATGCCAACATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAG
TATGCCAGTACTATAACTTTTTGCGCCATGGTCGTAGTGGATATACCGCAGTTCATCAAG
CTTGTCTAGATCATGGTATTTTCATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATA
TTGTTTATGATGGTACTGGTGCACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAA
AAGTAAAATTCAATCTCTTTGACCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTG
CATCCTATACTCTACCAAACTTACCAGATATTGTAGTTCAAAGAGTATTAATTAGACATG
GTTTCAGTCATGATATGGCAATG
Length of connected seq. 793
Full length Seq ID -
Full length Seq. -
Length of full length seq. -