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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFO692
Library AF
(Link to library)
Clone ID AFO692
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13846-1
Original site URL
Representative seq. ID AFO692E
(Link to Original site)
Representative DNA sequence 
>AFO692 (AFO692Q) /CSM/AF/AFO6-D/AFO692Q.Seq.d/
AACACATTAAAATTTTTTTAAACACGTTAAATAAAAAAAATGATTAAAAAATTAATATTA
GATCCAAAGAATGTATCAATAATTAAAAATGGTATTAGAAATTATTCAAAATCAAAATCA
TTTATTCAACCAATTACAACATTATCAGAAGAGGAAACTTTATTAAAAGAAACTGTTGCA
AATTTTGCAAATGAAAAAGTTAGACCATTAGTAAAGGTTATGGATGAAACATCAGAATTA
AATAAAGGATTATTAAAAGATTTATTCGATATGAATTTAATGGGTATTGATATTTCAGAT
AGTTATGGTGGAGCCAATATGAATTTTATGGGATCAATCATTGCTATTGAAGAATTAGCA
AAAGTTGATCCAGCCATTAGTGTAATAGTAGATGTACAAAATACACTCGTTAACAATTGT
ATCAATCGTTATGGTAGCATACAACAAAGAGAAAAGTATTTATCAATGTTGGCAACCAAC
ACAGTTGGTAGTTTTTGTCTAAGTGAATCAGGCTCAGGTTCTGATGCATTCGCATTGGCA
ACTCGTGCAGTCAGACAATCAGATGGCACATTCGTTTTAAATGGCACTAAACCAATGGAT
CACAAATGCCAAAGAGGCAGGTGTTTTCATCGTTATGGCAAATGTCGACCCATCACAGGG
TTACAAAGGGTATCACTGCCTTCATTGTTGAATCTAATAATCCAGGTTTAAGAATTGGTA
AGAAGGAGGATAAATTAGGTATTAGAGCAAGCAGTACTTGTGAAGTTATTTTGGACAATT
GTGTGGTAAAACCAACTGATATCCTCGGTGAATTGGGTAGAGGTTATAAAATTGCTATCG
AGGGTTTAAATGAAGGTCGTATTGGTATCGCTGCTCAAATGTTGGGTTTAGCTCAAGGTG
TATTCGATTCAACTATTCCTTACTTGATGGAACGTAAACAATTTGGTAAACCAATCGCTA
CTTTCCAAGGTATGCAATTCACTTATGCAGATTTAGCTGTAGATATTGAAGCTGGTAGAC
TTTTAACTTATAATGCAGCTCGTATTAAAGAAGCTGGTCTACCATTTGTTTTCCAAGCTT
CAATGGCAAAACTTCATTGTTCACGTGTCGCTGAAAAAGCAGCTTCTGCTTGTATTTCAA
TGTTGGGTGGTGTTGGTTTCACTAAAGAATTCCCTGCTGAAAAATTCTTTAGAGATTCAA
AAGTCGGTCAAATTTATGAAGGNACTTCAAATATTCAATTACAAACAATGCAAAAGAAAT
GTTAAAAATTTAATAAAAAAAAAAAATNAACAAAA
sequence update 2001. 6. 9
Translated Amino Acid sequence 
ntlkff*tr*IKKMIKKLILDPKNVSIIKNGIRNYSKSKSFIQPITTLSEEETLLKETVA
NFANEKVRPLVKVMDETSELNKGLLKDLFDMNLMGIDISDSYGGANMNFMGSIIAIEELA
KVDPAISVIVDVQNTLVNNCINRYGSIQQREKYLSMLATNTVGSFCLSESGSGSDAFALA
TRAVRQSDGTFVLNGTKPMDHKCQRGRCFHRYGKCRPITGLQRVSLPSLLNLIIQV*elv
rrrin*vleqavlvklfwtivw*nqlissvnwvevikllsrv*mkvvlvsllkcwv*lkv
ysiqlflt*wnvnnlvnqsllskvcnslmqi*l*ilklvdf*limqlvlkklvyhlfskl
qwqnfivhvslkkqlllvfqcwvvlvslknsllknsleiqksvkfmkxlqifnykqckrn
vknlikkknxq
Translated Amino Acid sequence (All Frames) 
Frame A:
ntlkff*tr*IKKMIKKLILDPKNVSIIKNGIRNYSKSKSFIQPITTLSEEETLLKETVA
NFANEKVRPLVKVMDETSELNKGLLKDLFDMNLMGIDISDSYGGANMNFMGSIIAIEELA
KVDPAISVIVDVQNTLVNNCINRYGSIQQREKYLSMLATNTVGSFCLSESGSGSDAFALA
TRAVRQSDGTFVLNGTKPMDHKCQRGRCFHRYGKCRPITGLQRVSLPSLLNLIIQV*elv
rrrin*vleqavlvklfwtivw*nqlissvnwvevikllsrv*mkvvlvsllkcwv*lkv
ysiqlflt*wnvnnlvnqsllskvcnslmqi*l*ilklvdf*limqlvlkklvyhlfskl
qwqnfivhvslkkqlllvfqcwvvlvslknsllknsleiqksvkfmkxlqifnykqckrn
vknlikkknxq


Frame B:
th*nffkhvk*kk*lkn*y*iqrmyq*lkmvleiiqnqnhlfnqlqhyqkrkly*kkllq
ilqmkkldh**rlwmkhqn*ikdy*kiysi*i*wvlifqivmvepi*ilwdqslllkn*q
kliqplv***mykihsltivsivmvaynkeksiyqcwqptqlvvfv*vnqaqvlmhshwq
lvqsdnqmahsf*malnqwitnakeagvfivmanvdpsqgykgyhclhc*i**srfknw*
egg*iry*skqyl*syfgqlcgktn*ypr*ig*rl*ncyrgfk*rsywyrcsnvgfssrc
irfnyslldgt*tiw*tnryfpryaihlcrfscry*sw*tfnl*cssy*rswsticfpsf
ngktslftcr*kssfclyfnvgwcwfh*ripc*kil*rfksrsnl*rxfkysitnnakem
lki**kkkxnk


Frame C:
hikiflntlnkknd*kinirskecinn*kwy*klfkikiiystnyniirrgnfikrncck
fck*ks*tiskgyg*nirik*riikrfiryefngy*yfr*lwwsqyefyginhcy*risk
s*ssh*cnsrctkytr*qlyqslw*httkrkvfinvgnqhsw*flsk*irlrf*cirign
scsqtirwhirfkwh*tngsqmpkrqvfsslwqmsthhrvtkgitafivesnnpglrigk
kedklgirasstcevildncvvkptdilgelgrgykiaieglnegrigiaaqmlglaqgv
fdstipylmerkqfgkpiatfqgmqftyadlavdieagrlltynaarikeaglpfvfqas
maklhcsrvaekaasacismlggvgftkefpaekffrdskvgqiyegtsniqlqtmqkkc
*kfnkkkkxtk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFO692 (AFO692Q) /CSM/AF/AFO6-D/AFO692Q.Seq.d/                       2472   0.0
AFD462 (AFD462Q) /CSM/AF/AFD4-C/AFD462Q.Seq.d/                       2405   0.0
AFG654 (AFG654Q) /CSM/AF/AFG6-C/AFG654Q.Seq.d/                       2399   0.0
SLG556 (SLG556Q) /CSM/SL/SLG5-C/SLG556Q.Seq.d/                       2389   0.0
AFA590 (AFA590Q) /CSM/AF/AFA5-D/AFA590Q.Seq.d/                       2389   0.0
AFD724 (AFD724Q) /CSM/AF/AFD7-A/AFD724Q.Seq.d/                       2357   0.0
SFC345 (SFC345Q) /CSM/SF/SFC3-B/SFC345Q.Seq.d/                       1415   0.0
AFK518 (AFK518Q) /CSM/AF/AFK5-A/AFK518Q.Seq.d/                       1403   0.0
CFJ883 (CFJ883Q) /CSM/CF/CFJ8-D/CFJ883Q.Seq.d/                       1368   0.0
SFK863 (SFK863Q) /CSM/SF/SFK8-C/SFK863Q.Seq.d/                       1360   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AU114157|AU114157.1 Caenorhabditis elegans cDNA clone:yk715h10 : 3' end, single read.    54  2e-09  2
AU214247|AU214247.1 Caenorhabditis elegans cDNA clone:yk810h12 : 3' end, single read.    46  4e-09  3
D72651|D72651.1 C.elegans cDNA clone yk106c6 : 3' end, single read.    48  1e-07  2
AV200861|AV200861.1 Caenorhabditis elegans cDNA clone:yk582b10 : 3' end, single read.    46  4e-07  2
AV199959|AV199959.1 Caenorhabditis elegans cDNA clone:yk554c9 : 3' end, single read.    46  4e-07  2
AV200615|AV200615.1 Caenorhabditis elegans cDNA clone:yk577h4 : 3' end, single read.    46  4e-07  2
AV199019|AV199019.1 Caenorhabditis elegans cDNA clone:yk539b9 : 3' end, single read.    46  4e-07  2
AV183396|AV183396.1 Caenorhabditis elegans cDNA clone:yk651a5 : 3' end, single read.    46  4e-07  2
AV180387|AV180387.1 Caenorhabditis elegans cDNA clone:yk606g11 : 3' end, single read.    46  4e-07  2
AU116783|AU116783.1 Caenorhabditis elegans cDNA clone:yk748h5 : 3' end, single read.    46  4e-07  2
dna update 2003. 9.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RR5) RecName: Full=Probable short/branched chain specific ac...   383   0.0
AB169822_1(AB169822|pid:none) Macaca fascicularis brain cDNA, cl...   245   e-106
AB170478_1(AB170478|pid:none) Macaca fascicularis brain cDNA clo...   245   e-106
CP000360_1129(CP000360|pid:none) Acidobacteria bacterium Ellin34...   249   e-106
DQ864937_1(DQ864937|pid:none) Pfiesteria piscicida clone ppi-5p-...   258   e-105
AF039038_2(AF039038|pid:none) Caenorhabditis elegans cosmid K06A...   255   e-105
(Q5EAD4) RecName: Full=Short/branched chain specific acyl-CoA de...   245   e-103
CP000473_5244(CP000473|pid:none) Solibacter usitatus Ellin6076, ...   257   e-101
AL831821_1(AL831821|pid:none) Homo sapiens mRNA; cDNA DKFZp451K2...   244   e-100
DQ515927_1(DQ515927|pid:none) Bombyx mori strain NB acyl-coenzym...   239   1e-98
protein update 2009. 6.29
PSORT 

 psg: 0.62  gvh: 0.24  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: mitochondrial
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal

>> prediction for AFO692 is nuc
5' end seq. ID AFO692F
5' end seq. 
>AFO692F.Seq
AACACATTAAAATTTTTTTAAACACGTTAAATAAAAAAAATGATTAAAAAATTAATATTA
GATCCAAAGAATGTATCAATAATTAAAAATGGTATTAGAAATTATTCAAAATCAAAATCA
TTTATTCAACCAATTACAACATTATCAGAAGAGGAAACTTTATTAAAAGAAACTGTTGCA
AATTTTGCAAATGAAAAAGTTAGACCATTAGTAAAGGTTATGGATGAAACATCAGAATTA
AATAAAGGATTATTAAAAGATTTATTCGATATGAATTTAATGGGTATTGATATTTCAGAT
AGTTATGGTGGAGCCAATATGAATTTTATGGGATCAATCATTGCTATTGAAGAATTAGCA
AAAGTTGATCCAGCCATTAGTGTAATAGTAGATGTACAAAATACACTCGTTAACAATTGT
ATCAATCGTTATGGTAGCATACAACAAAGAGAAAAGTATTTATCAATGTTGGCAACCAAC
ACAGTTGGTAGTTTTTGTCTAAGTGAATCAGGCTCAGGTTCTGATGCATTCGCATTGGCA
ACTCGTGCAGTCAGACAATCAGATGGCACATTCGTTTTAAATGGCACTAAACAATGGATC
ACAAATGCCAAAGAGGCAGGTGTTTT----------
Length of 5' end seq. 626
3' end seq. ID AFO692Z
3' end seq. 
>AFO692Z.Seq
----------ATCAGATGGCACATTCGTTTTAAATGGCACTAANCCAATGGATCACAAAT
GCCAAAGAGGCAGGTGTTTTCATCGTTATGGCAAATGTCGACCCATCACAGGGTTACAAA
GGGTATCACTGCCTTCATTGTTGAATCTAATAATCCAGGTTTAAGAATTGGTAAGAAGGA
GGATAAATTAGGTATTAGAGCAAGCAGTACTTGTGAAGTTATTTTGGACAATTGTGTGGT
AAAACCAACTGATATCCTCGGTGAATTGGGTAGAGGTTATAAAATTGCTATCGAGGGTTT
AAATGAAGGTCGTATTGGTATCGCTGCTCAAATGTTGGGTTTAGCTCAAGGTGTATTCGA
TTCAACTATTCCTTACTTGATGGAACGTAAACAATTTGGTAAACCAATCGCTACTTTCCA
AGGTATGCAATTCACTTATGCAGATTTAGCTGTAGATATTGAAGCTGGTAGACTTTTAAC
TTATAATGCAGCTCGTATTAAAGAAGCTGGTCTACCATTTGTTTTCCAAGCTTCAATGGC
AAAACTTCATTGTTCACGTGTCGCTGAAAAAGCAGCTTCTGCTTGTATTTCAATGTTGGG
TGGTGTTGGTTTCACTAAAGAATTCCCTGCTGAAAAATTCTTTAGAGATTCAAAAGTCGG
TCAAATTTATGAAGGNACTTCAAATATTCAATTACAAACAATGCAAAAGAAATGTTAAAA
ATTTAATAAAAAAAAAAAATNAACAAAA
Length of 3' end seq. 738
Connected seq. ID AFO692P
Connected seq. 
>AFO692P.Seq
AACACATTAAAATTTTTTTAAACACGTTAAATAAAAAAAATGATTAAAAAATTAATATTA
GATCCAAAGAATGTATCAATAATTAAAAATGGTATTAGAAATTATTCAAAATCAAAATCA
TTTATTCAACCAATTACAACATTATCAGAAGAGGAAACTTTATTAAAAGAAACTGTTGCA
AATTTTGCAAATGAAAAAGTTAGACCATTAGTAAAGGTTATGGATGAAACATCAGAATTA
AATAAAGGATTATTAAAAGATTTATTCGATATGAATTTAATGGGTATTGATATTTCAGAT
AGTTATGGTGGAGCCAATATGAATTTTATGGGATCAATCATTGCTATTGAAGAATTAGCA
AAAGTTGATCCAGCCATTAGTGTAATAGTAGATGTACAAAATACACTCGTTAACAATTGT
ATCAATCGTTATGGTAGCATACAACAAAGAGAAAAGTATTTATCAATGTTGGCAACCAAC
ACAGTTGGTAGTTTTTGTCTAAGTGAATCAGGCTCAGGTTCTGATGCATTCGCATTGGCA
ACTCGTGCAGTCAGACAATCAGATGGCACATTCGTTTTAAATGGCACTAAACAATGGATC
ACAAATGCCAAAGAGGCAGGTGTTTT----------ATCAGATGGCACATTCGTTTTAAA
TGGCACTAANCCAATGGATCACAAATGCCAAAGAGGCAGGTGTTTTCATCGTTATGGCAA
ATGTCGACCCATCACAGGGTTACAAAGGGTATCACTGCCTTCATTGTTGAATCTAATAAT
CCAGGTTTAAGAATTGGTAAGAAGGAGGATAAATTAGGTATTAGAGCAAGCAGTACTTGT
GAAGTTATTTTGGACAATTGTGTGGTAAAACCAACTGATATCCTCGGTGAATTGGGTAGA
GGTTATAAAATTGCTATCGAGGGTTTAAATGAAGGTCGTATTGGTATCGCTGCTCAAATG
TTGGGTTTAGCTCAAGGTGTATTCGATTCAACTATTCCTTACTTGATGGAACGTAAACAA
TTTGGTAAACCAATCGCTACTTTCCAAGGTATGCAATTCACTTATGCAGATTTAGCTGTA
GATATTGAAGCTGGTAGACTTTTAACTTATAATGCAGCTCGTATTAAAGAAGCTGGTCTA
CCATTTGTTTTCCAAGCTTCAATGGCAAAACTTCATTGTTCACGTGTCGCTGAAAAAGCA
GCTTCTGCTTGTATTTCAATGTTGGGTGGTGTTGGTTTCACTAAAGAATTCCCTGCTGAA
AAATTCTTTAGAGATTCAAAAGTCGGTCAAATTTATGAAGGNACTTCAAATATTCAATTA
CAAACAATGCAAAAGAAATGTTAAAAATTTAATAAAAAAAAAAAATNAACAAAA
Length of connected seq. 1364
Full length Seq ID AFO692E
Full length Seq. 
>AFO692E.Seq
AACACATTAAAATTTTTTTAAACACGTTAAATAAAAAAAATGATTAAAAAATTAATATTA
GATCCAAAGAATGTATCAATAATTAAAAATGGTATTAGAAATTATTCAAAATCAAAATCA
TTTATTCAACCAATTACAACATTATCAGAAGAGGAAACTTTATTAAAAGAAACTGTTGCA
AATTTTGCAAATGAAAAAGTTAGACCATTAGTAAAGGTTATGGATGAAACATCAGAATTA
AATAAAGGATTATTAAAAGATTTATTCGATATGAATTTAATGGGTATTGATATTTCAGAT
AGTTATGGTGGAGCCAATATGAATTTTATGGGATCAATCATTGCTATTGAAGAATTAGCA
AAAGTTGATCCAGCCATTAGTGTAATAGTAGATGTACAAAATACACTCGTTAACAATTGT
ATCAATCGTTATGGTAGCATACAACAAAGAGAAAAGTATTTATCAATGTTGGCAACCAAC
ACAGTTGGTAGTTTTTGTCTAAGTGAATCAGGCTCAGGTTCTGATGCATTCGCATTGGCA
ACTCGTGCAGTCAGACAATCAGATGGCACATTCGTTTTAAATGGCACTAAACCAATGGAT
CACAAATGCCAAAGAGGCAGGTGTTTTCATCGTTATGGCAAATGTCGACCCATCACAGGG
TTACAAAGGGTATCACTGCCTTCATTGTTGAATCTAATAATCCAGGTTTAAGAATTGGTA
AGAAGGAGGATAAATTAGGTATTAGAGCAAGCAGTACTTGTGAAGTTATTTTGGACAATT
GTGTGGTAAAACCAACTGATATCCTCGGTGAATTGGGTAGAGGTTATAAAATTGCTATCG
AGGGTTTAAATGAAGGTCGTATTGGTATCGCTGCTCAAATGTTGGGTTTAGCTCAAGGTG
TATTCGATTCAACTATTCCTTACTTGATGGAACGTAAACAATTTGGTAAACCAATCGCTA
CTTTCCAAGGTATGCAATTCACTTATGCAGATTTAGCTGTAGATATTGAAGCTGGTAGAC
TTTTAACTTATAATGCAGCTCGTATTAAAGAAGCTGGTCTACCATTTGTTTTCCAAGCTT
CAATGGCAAAACTTCATTGTTCACGTGTCGCTGAAAAAGCAGCTTCTGCTTGTATTTCAA
TGTTGGGTGGTGTTGGTTTCACTAAAGAATTCCCTGCTGAAAAATTCTTTAGAGATTCAA
AAGTCGGTCAAATTTATGAAGGNACTTCAAATATTCAATTACAAACAATGCAAAAGAAAT
GTTAAAAATTTAATAAAAAAAAAAAATNAACAAAA
Length of full length seq. 1295