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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFO688
Library AF
(Link to library)
Clone ID AFO688
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13990-1
Original site URL
Representative seq. ID AFO688Z
(Link to Original site)
Representative DNA sequence 
>AFO688 (AFO688Q) /CSM/AF/AFO6-D/AFO688Q.Seq.d/
XXXXXXXXXXANAAAATAAANAAGTAGTTGGTGAAAATGGTNAAAATGGTNAAAANATTG
TTNAACAACCANAAATTCNAACATNTGAACTTTTANATGCAATTTNTAAANATNTTGGTG
GGTTGGANAGCGAATTNTCAAANAAAANAGAAAGTTTTAAANAAAAAGAAAATGNAATTN
NAAAGATTGATAAAANGCTTAAATNTGATTTAGGAGTTAANAATGNTTTCATTCCNTTGN
ANAGTAAANGNTTTGATTTGGNTACTAAANAGGACNCNTACAGNGTTTGNCCATATGAAA
AAGCNTCCCAAGGTCANACTAGNTTAGGTAAATTCGAATCNTTTGGTGANAANGGNAAAA
NGATGTTATTTNAAAATGGNCNACAANGNTGGGGNGGNCCNAAACGTTCNCTTAAAGNCC
NTANGGAATGTGGNCNANATAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---XNKXVVGENGXNGXXIVXQPXIXTXELLXAIXKXXGGLXSEXSXKXESFKXKENXIX
KIDKXLKXDLGVXNXFIPLXSKXFDLXTKXDXYXVXPYEKASQGXTXLGKFESFGXXGKX
MLFXNGXQXWGGPKRSLKXXXECGXX
Translated Amino Acid sequence (All Frames) 
Frame A:
---XNKXVVGENGXNGXXIVXQPXIXTXELLXAIXKXXGGLXSEXSXKXESFKXKENXIX
KIDKXLKXDLGVXNXFIPLXSKXFDLXTKXDXYXVXPYEKASQGXTXLGKFESFGXXGKX
MLFXNGXQXWGGPKRSLKXXXECGXX


Frame B:
---kixk*lvkmvkmvkxlxnnxkfxhxnfxmqfxxxlvgwxanxqxkxkvlxkkkmxxx
rlikxlnxi*elxmxsfxxxvxxliwxlxrtxtxfxhmkkxpkvxlx*vnsnxlvxxxkx
cyxkmxxxxgxxxnvxlkxxxnvxxi


Frame C:
---k*xssw*kwxkwxkxcxttxnsnx*tfxcnx*xxwwvgxrixkxxrkf*xkrkxnxk
d**xa*x*frs*xxfhsxxx*xx*fgy*xgxxqxlxi*ksxprsx*xr*irixw*xxxxd
vixkwxtxxgxxxtfx*xpxgmwxx*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFO688 (AFO688Q) /CSM/AF/AFO6-D/AFO688Q.Seq.d/                        281   4e-75
VSE239 (VSE239Q) /CSM/VS/VSE2-B/VSE239Q.Seq.d/                        266   3e-70
VSD144 (VSD144Q) /CSM/VS/VSD1-B/VSD144Q.Seq.d/                        266   3e-70
VFL540 (VFL540Q) /CSM/VF/VFL5-B/VFL540Q.Seq.d/                        266   3e-70
SHL533 (SHL533Q) /CSM/SH/SHL5-B/SHL533Q.Seq.d/                        266   3e-70
VHP508 (VHP508Q) /CSM/VH/VHP5-A/VHP508Q.Seq.d/                         32   6.7
VHP146 (VHP146Q) /CSM/VH/VHP1-B/VHP146Q.Seq.d/                         32   6.7
VHO627 (VHO627Q) /CSM/VH/VHO6-B/VHO627Q.Seq.d/                         32   6.7
VHN190 (VHN190Q) /CSM/VH/VHN1-D/VHN190Q.Seq.d/                         32   6.7
VHK757 (VHK757Q) /CSM/VH/VHK7-C/VHK757Q.Seq.d/                         32   6.7
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BM167721|BM167721.1 EST570244 PyBS Plasmodium yoelii yoelii cDNA clone PYCOP62 5' end, mRNA sequence.    42  5.6  1
BM159491|BM159491.1 EST562014 PyBS Plasmodium yoelii yoelii cDNA clone PYCJE76 5' end, mRNA sequence.    42  5.6  1
dna update 2002. 5.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK102926_1(AK102926|pid:none) Oryza sativa Japonica Group cDNA c...    55   9e-07
AB009049_9(AB009049|pid:none) Arabidopsis thaliana genomic DNA, ...    54   2e-06
AY086076_1(AY086076|pid:none) Arabidopsis thaliana clone 21044 m...    54   2e-06
BT054926_1(BT054926|pid:none) Zea mays full-length cDNA clone ZM...    52   5e-06
BT054410_1(BT054410|pid:none) Zea mays full-length cDNA clone ZM...    52   5e-06
BC078024_1(BC078024|pid:none) Xenopus laevis protein kinase C su...    45   0.001
BC074301_1(BC074301|pid:none) Xenopus laevis MGC84105 protein, m...    44   0.002
BC046883_1(BC046883|pid:none) Danio rerio protein kinase C subst...    43   0.003
BC064160_1(BC064160|pid:none) Xenopus tropicalis protein kinase ...    43   0.004
BC154890_1(BC154890|pid:none) Xenopus tropicalis protein kinase ...    43   0.004
protein update 2009. 4.26
PSORT 

 psg: 0.80  gvh: 0.55  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for AFO688 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFO688Z
3' end seq. 
>AFO688Z.Seq
----------ANAAAATAAANAAGTAGTTGGTGAAAATGGTNAAAATGGTNAAAANATTG
TTNAACAACCANAAATTCNAACATNTGAACTTTTANATGCAATTTNTAAANATNTTGGTG
GGTTGGANAGCGAATTNTCAAANAAAANAGAAAGTTTTAAANAAAAAGAAAATGNAATTN
NAAAGATTGATAAAANGCTTAAATNTGATTTAGGAGTTAANAATGNTTTCATTCCNTTGN
ANAGTAAANGNTTTGATTTGGNTACTAAANAGGACNCNTACAGNGTTTGNCCATATGAAA
AAGCNTCCCAAGGTCANACTAGNTTAGGTAAATTCGAATCNTTTGGTGANAANGGNAAAA
NGATGTTATTTNAAAATGGNCNACAANGNTGGGGNGGNCCNAAACGTTCNCTTAAAGNCC
NTANGGAATGTGGNCNANATAA
Length of 3' end seq. 432
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -