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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFO687
Library AF
(Link to library)
Clone ID AFO687
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16598-1
Original site URL
Representative seq. ID AFO687P
(Link to Original site)
Representative DNA sequence 
>AFO687 (AFO687Q) /CSM/AF/AFO6-D/AFO687Q.Seq.d/
ATTTTTATATATATAAAAAATGGCATCTATAAATACAGAATCGGATGATTATCATCCAAT
TGTTATTTTAATTGATGAATTAAAAAATGAGGATATACAACTTAGACTTAATTCAATAAA
AAAACTTCAATCAATTGCAAAAGCATTAGGACCAGAACGTACCCGTACAGAATTAATCCC
ATATTTACAAGACTCTGTTCTCGAAGATGAAGATGAAGTTTTAGTTGTATTATCAGAAGA
ATTAGGAAATTTAATCGAGTTTGTTGGTGGTGCAGAACATGCTGTTTGTTTATTACCACC
ATTACAAATTTTAGCAGGTGCTGAGGAATTAGTTGTTAGAGAAAAGGCAGTGGAATCATT
ATGTAAAATTGCAAAAGAGATCCCAACATCATCATTCGAAGAATCATTCCTTCCATTATT
ATTTTCATTATCAAAAGCAGATTGGTTTACATCACGTACATCAGCATGTGGACTTTTCAC
TGTATCATATCCAAGAGCAAATGCTGAAATGAAGAAATCTTTAAGAAAAACTTTTGGGGG
ATTATGTCACGATGATACACCAATGGTTAAGAGAGCTGCTGCAACTAATTTAGGTAXXXX
XXXXXXTCTTCCATGCGTTAAAGATTTGGTATCAGATTCATCACAACATGTTAGAGCTGC
ACTTGCTCAAGTCATTATGTCATTGGCACCAATTTATGGTAAAGAAGATACATTAACTCA
TCCTTTTAGAATTGTTTTTACATCTCTTAAAAGATGATTTCCCAGATGTTCGTTTAAATA
TCATTTCAAAATTAGATCAAGTAAGTAAAGTAATTGGTATTGAAATGTTATCACAATCTC
TATTACCAGCTATCGTTGAATTGGCTGAAGATCATCAATGGAGAGTAAGATTAGCAATTA
TTGATTATATTCCACTTTTAGCTTCACAATTAGGTGTTGAATTCTTTGATGAAAAACTTG
GTAATTTATGTATGACTTGGTTAGGTGATCCAGTATTTTCAATTCGTGAAGCAGCAACTA
ATAATTTGAAGAAATTAACCGAAGTATTTGGAGTTGATTGGGCAAAGAATAATATTATTC
CAAAAGTTTTATCTTTACACTCTCATCCAAACTATCTCTATCGTATGACCACATTATTTT
CAATTTCAACCCTTTCAACTGTCGTTGGAGGTGATGTTATCTCTAATTCAATGGTTCCTT
TATTGGCCAAAATGGTTTCCGATAAAGTTCCAAATATTAGATTTAATGTAGCTAAAACTT
TCCAAACCATTATTCCATTACTCGATAGCACAATTGTACAATCAAGAGTCAAACCATTAC
TCGTAAAACTTCAGAAGATACNATAAAGAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
flyi*KMASINTESDDYHPIVILIDELKNEDIQLRLNSIKKLQSIAKALGPERTRTELIP
YLQDSVLEDEDEVLVVLSEELGNLIEFVGGAEHAVCLLPPLQILAGAEELVVREKAVESL
CKIAKEIPTSSFEESFLPLLFSLSKADWFTSRTSACGLFTVSYPRANAEMKKSLRKTFGG
LCHDDTPMVKRAAATNLG---

---LPCVKDLVSDSSQHVRAALAQVIMSLAPIYGKEDTLTHPFRIVFTSLKR*fprcsfk
yhfkirssk*snwy*nvitisitsyr*ig*rssmeskisny*lystfsftirc*il**kt
w*fmydlvr*ssifns*ssn**feeinrsiws*lgke*yysksfiftlssklslsydhii
fnfnpfncrwr*cyl*fngsfigqngfr*ssky*i*cs*nfpnhysitr*hnctiksqti
trktsedtik
Translated Amino Acid sequence (All Frames) 
Frame A:
ifiyikngiykyrig*lssncyfn**ikk*gytt*t*fnkktsincksirtrtypyrinp
iftrlcsrr*r*sfsciirrirkfnrvcwwcrtcclfittitnfsrc*gisc*rkgsgii
m*nckrdpniiirriipsiiifiiksrlvyityismwtfhciiskskc*neeifkknfwg
imsr*ytng*esccn*fr---

---ssmr*rfgirfittc*sctcsshyvigtnlw*rryinssf*ncfyis*kmisqmfv*
isfqn*ik*vk*lvlkcyhnlyyqlslnwlkiinge*d*qlliifhf*lhn*vlnslmkn
lviyv*lg*viqyfqfvkqqlii*rn*pkyleligqriilfqkfylytliqtisiv*phy
fqfqpfqlslevmlsliqwflywpkwfpikfqildlm*lklskplfhysiaqlynqesnh
ys*nfrryxkd

Frame B:
flyi*KMASINTESDDYHPIVILIDELKNEDIQLRLNSIKKLQSIAKALGPERTRTELIP
YLQDSVLEDEDEVLVVLSEELGNLIEFVGGAEHAVCLLPPLQILAGAEELVVREKAVESL
CKIAKEIPTSSFEESFLPLLFSLSKADWFTSRTSACGLFTVSYPRANAEMKKSLRKTFGG
LCHDDTPMVKRAAATNLG---

---LPCVKDLVSDSSQHVRAALAQVIMSLAPIYGKEDTLTHPFRIVFTSLKR*fprcsfk
yhfkirssk*snwy*nvitisitsyr*ig*rssmeskisny*lystfsftirc*il**kt
w*fmydlvr*ssifns*ssn**feeinrsiws*lgke*yysksfiftlssklslsydhii
fnfnpfncrwr*cyl*fngsfigqngfr*ssky*i*cs*nfpnhysitr*hnctiksqti
trktsedtik

Frame C:
fyiykkwhl*iqnrmiiiqllf*lmn*kmriynldliq*knfnqlqkh*dqnvpvqn*sh
iyktlfskmkmkf*lyyqkn*ei*ssllvvqnmlfvyyhhykf*qvlrn*llekrqwnhy
vklqkrsqhhhsknhsfhyyfhyqkqiglhhvhqhvdfslyhiqeqmlk*rnl*ekllgd
yvtmihqwlrellqli*v---

---fhalkiwyqihhnmlelhllkslchwhqfmvkkih*lillelflhllkddfpdvrln
iiskldqvskvigiemlsqsllpaivelaedhqwrvrlaiidyipllasqlgveffdekl
gnlcmtwlgdpvfsireaatnnlkkltevfgvdwaknniipkvlslhshpnylyrmttlf
sistlstvvggdvisnsmvpllakmvsdkvpnirfnvaktfqtiiplldstivqsrvkpl
lvklqkix*r
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFO687 (AFO687Q) /CSM/AF/AFO6-D/AFO687Q.Seq.d/                       2569   0.0
AFO390 (AFO390Q) /CSM/AF/AFO3-D/AFO390Q.Seq.d/                       1429   0.0
SFD371 (SFD371Q) /CSM/SF/SFD3-C/SFD371Q.Seq.d/                       1407   0.0
SFF891 (SFF891Q) /CSM/SF/SFF8-D/SFF891Q.Seq.d/                       1380   0.0
SFJ287 (SFJ287Q) /CSM/SF/SFJ2-D/SFJ287Q.Seq.d/                       1348   0.0
SFG772 (SFG772Q) /CSM/SF/SFG7-C/SFG772Q.Seq.d/                       1330   0.0
AFK893 (AFK893Q) /CSM/AF/AFK8-D/AFK893Q.Seq.d/                       1320   0.0
SFJ265 (SFJ265Q) /CSM/SF/SFJ2-C/SFJ265Q.Seq.d/                       1318   0.0
AFL515 (AFL515Q) /CSM/AF/AFL5-A/AFL515Q.Seq.d/                       1318   0.0
SFF850 (SFF850Q) /CSM/SF/SFF8-C/SFF850Q.Seq.d/                       1314   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U61987|U61987.1 Dictyostelium discoideum phosphoprotein phosphatase A (pppA) mRNA, complete cds.  1180  0.0  4
AL428358|AL428358.1 clone BA0AB025C09 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    48  9e-12  3
BU276111|BU276111.1 Cr_Emb_06C12_TEXF1 Convoluta roscoffensis embryos from Eva Jiminez Convoluta roscoffensis cDNA clone Cr_Emb_06C12 5' similar to Q23922 PHOSPHOPROTEIN PHOSPHATASE A. Dictyostelium discoideum, mRNA sequence.    58  1e-09  4
BI516804|BI516804.1 BB160023B10E05 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160023B10E05 5', mRNA sequence.    44  5e-07  3
AX596522|AX596522.1 Sequence 2176 from Patent EP1258494.          44  2e-05  3
L05146|L05146.2 Saccharomyces cerevisiae chromosome I left arm sequence.    44  4e-05  4
M98389|M98389.1 Yeast protein phosphatase regulatory subuni...    44  6e-05  3
BC056218|BC056218.1 Mus musculus cDNA clone MGC:60862 IMAGE:30016074, complete cds.    38  7e-04  3
CD433784|CD433784.1 EL01N0315B07.b Endosperm_3 Zea mays cDNA, mRNA sequence.    44  0.001  2
AJ131045|AJ131045.1 Cicer arietinum mRNA for protein phosphatase.    54  0.005  1
dna update 2003. 9.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61987_1(U61987|pid:none) Dictyostelium discoideum phosphoprotei...   365   e-117
BC046055_1(BC046055|pid:none) Danio rerio protein phosphatase 2 ...   246   e-101
AM920433_216(AM920433|pid:none) Penicillium chrysogenum Wisconsi...   263   6e-79
AM270402_10(AM270402|pid:none) Aspergillus niger contig An18c010...   257   2e-76
A34541(A34541;A36180;E38351) phosphoprotein phosphatase 2-alpha ...   246   2e-76
BC108103_1(BC108103|pid:none) Bos taurus protein phosphatase 2 (...   245   2e-76
AY892682_1(AY892682|pid:none) Synthetic construct Homo sapiens c...   246   3e-76
AB170499_1(AB170499|pid:none) Macaca fascicularis brain cDNA clo...   246   3e-76
AJ243828_1(AJ243828|pid:none) Oryza sativa mRNA for protein phos...   248   3e-76
(P54612) RecName: Full=Serine/threonine-protein phosphatase 2A 6...   246   3e-76
protein update 2009. 4.26
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for AFO687 is cyt
5' end seq. ID AFO687F
5' end seq. 
>AFO687F.Seq
ATTTTTATATATATAAAAAATGGCATCTATAAATACAGAATCGGATGATTATCATCCAAT
TGTTATTTTAATTGATGAATTAAAAAATGAGGATATACAACTTAGACTTAATTCAATAAA
AAAACTTCAATCAATTGCAAAAGCATTAGGACCAGAACGTACCCGTACAGAATTAATCCC
ATATTTACAAGACTCTGTTCTCGAAGATGAAGATGAAGTTTTAGTTGTATTATCAGAAGA
ATTAGGAAATTTAATCGAGTTTGTTGGTGGTGCAGAACATGCTGTTTGTTTATTACCACC
ATTACAAATTTTAGCAGGTGCTGAGGAATTAGTTGTTAGAGAAAAGGCAGTGGAATCATT
ATGTAAAATTGCAAAAGAGATCCCAACATCATCATTCGAAGAATCATTCCTTCCATTATT
ATTTTCATTATCAAAAGCAGATTGGTTTACATCACGTACATCAGCATGTGGACTTTTCAC
TGTATCATATCCAAGAGCAAATGCTGAAATGAAGAAATCTTTAAGAAAAACTTTTGGGGG
ATTATGTCACGATGATACACCAATGGTTAAGAGAGCTGCTGCAACTAATTTAGGTA----
------
Length of 5' end seq. 596
3' end seq. ID AFO687Z
3' end seq. 
>AFO687Z.Seq
----------TCTTCCATGCGTTAAAGATTTGGTATCAGATTCATCACAACATGTTAGAG
CTGCACTTGCTCAAGTCATTATGTCATTGGCACCAATTTATGGTAAAGAAGATACATTAA
CTCATCCTTTTAGAATTGTTTTTACATCTCTTAAAAGATGATTTCCCAGATGTTCGTTTA
AATATCATTTCAAAATTAGATCAAGTAAGTAAAGTAATTGGTATTGAAATGTTATCACAA
TCTCTATTACCAGCTATCGTTGAATTGGCTGAAGATCATCAATGGAGAGTAAGATTAGCA
ATTATTGATTATATTCCACTTTTAGCTTCACAATTAGGTGTTGAATTCTTTGATGAAAAA
CTTGGTAATTTATGTATGACTTGGTTAGGTGATCCAGTATTTTCAATTCGTGAAGCAGCA
ACTAATAATTTGAAGAAATTAACCGAAGTATTTGGAGTTGATTGGGCAAAGAATAATATT
ATTCCAAAAGTTTTATCTTTACACTCTCATCCAAACTATCTCTATCGTATGACCACATTA
TTTTCAATTTCAACCCTTTCAACTGTCGTTGGAGGTGATGTTATCTCTAATTCAATGGTT
CCTTTATTGGCCAAAATGGTTTCCGATAAAGTTCCAAATATTAGATTTAATGTAGCTAAA
ACTTTCCAAACCATTATTCCATTACTCGATAGCACAATTGTACAATCAAGAGTCAAACCA
TTACTCGTAAAACTTCAGAAGATACNATAAAGAT
Length of 3' end seq. 744
Connected seq. ID AFO687P
Connected seq. 
>AFO687P.Seq
ATTTTTATATATATAAAAAATGGCATCTATAAATACAGAATCGGATGATTATCATCCAAT
TGTTATTTTAATTGATGAATTAAAAAATGAGGATATACAACTTAGACTTAATTCAATAAA
AAAACTTCAATCAATTGCAAAAGCATTAGGACCAGAACGTACCCGTACAGAATTAATCCC
ATATTTACAAGACTCTGTTCTCGAAGATGAAGATGAAGTTTTAGTTGTATTATCAGAAGA
ATTAGGAAATTTAATCGAGTTTGTTGGTGGTGCAGAACATGCTGTTTGTTTATTACCACC
ATTACAAATTTTAGCAGGTGCTGAGGAATTAGTTGTTAGAGAAAAGGCAGTGGAATCATT
ATGTAAAATTGCAAAAGAGATCCCAACATCATCATTCGAAGAATCATTCCTTCCATTATT
ATTTTCATTATCAAAAGCAGATTGGTTTACATCACGTACATCAGCATGTGGACTTTTCAC
TGTATCATATCCAAGAGCAAATGCTGAAATGAAGAAATCTTTAAGAAAAACTTTTGGGGG
ATTATGTCACGATGATACACCAATGGTTAAGAGAGCTGCTGCAACTAATTTAGGTA----
------TCTTCCATGCGTTAAAGATTTGGTATCAGATTCATCACAACATGTTAGAGCTGC
ACTTGCTCAAGTCATTATGTCATTGGCACCAATTTATGGTAAAGAAGATACATTAACTCA
TCCTTTTAGAATTGTTTTTACATCTCTTAAAAGATGATTTCCCAGATGTTCGTTTAAATA
TCATTTCAAAATTAGATCAAGTAAGTAAAGTAATTGGTATTGAAATGTTATCACAATCTC
TATTACCAGCTATCGTTGAATTGGCTGAAGATCATCAATGGAGAGTAAGATTAGCAATTA
TTGATTATATTCCACTTTTAGCTTCACAATTAGGTGTTGAATTCTTTGATGAAAAACTTG
GTAATTTATGTATGACTTGGTTAGGTGATCCAGTATTTTCAATTCGTGAAGCAGCAACTA
ATAATTTGAAGAAATTAACCGAAGTATTTGGAGTTGATTGGGCAAAGAATAATATTATTC
CAAAAGTTTTATCTTTACACTCTCATCCAAACTATCTCTATCGTATGACCACATTATTTT
CAATTTCAACCCTTTCAACTGTCGTTGGAGGTGATGTTATCTCTAATTCAATGGTTCCTT
TATTGGCCAAAATGGTTTCCGATAAAGTTCCAAATATTAGATTTAATGTAGCTAAAACTT
TCCAAACCATTATTCCATTACTCGATAGCACAATTGTACAATCAAGAGTCAAACCATTAC
TCGTAAAACTTCAGAAGATACNATAAAGAT
Length of connected seq. 1340
Full length Seq ID -
Full length Seq. -
Length of full length seq. -