AFB731 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

AFB731
Library	AF (Link to library)
Clone ID	AFB731 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U13873-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFB7-B/AFB731Q.Seq.d/
Representative seq. ID	AFB731P (Link to Original site)
Representative DNA sequence	>AFB731 (AFB731Q) /CSM/AF/AFB7-B/AFB731Q.Seq.d/ AATATNATAATTTTAAAAAATGAGTATTGAATNAATTAAAGCTAGAGAAATTTTGGATAG TAGAGGTAATCCAACATTAGAAGTTGAAGTATGGACAAGTGAAGGAATGTTTTCAGCCAA AGTACCAAGTGGAGCATCAACTGGTATTCATGAAGCATTTGAATTAAGAGATGGTGATAA AAGTCGTTATTTTGGATATGGTGTTTTGAATGCAATTGTTAATGTAAATAATTTAATATC ACCAACATTGAAAGGTATGAGAGTTGATAATCAAAAAGCAATAGATGATAAAATGATTGA ATTGGATGGTACAAAGAATAAATCAAAACTTGGGTCCAATGCAATCGTTGGTGTATCAAT GGCAGTGGCAAGAGCAGCCGCTTCTATTAAAGGTGTGCCCTTGTACCGTTACATTTCACA ATTGGCTGGAAATAGTAATATTCGTTTACCAGTACCATGTTTTAATGTTATTAATGGTGG AAAACATGCAGGTAATAGACTACCATTTCAAGAGTTTATGCTAGTACCCATTGGTGCACC AAAATTTAAAGAAGCATTGCGTTATGGTTCAGAAGTCTACCATTCACTCAAAGAGATCAT CAAGGAAAGATATGGTTTGGATGCTACAAATGTTGGAGATGAXXXXXXXXXXGTTTTGCA CCAAATTTGACTTCACCCTGAAGAAGCATTAACTCTGTTAGTGGATGCTATCAATCATTC GGGCTATCAAGATGTTATTAAAATTGGTATTGATTCTGCTGCTTCAGAATTTTGGAATCC AAAGACTTCAAAATATGATATGGATTTCAAGAATATAGGATCCTCACATTTGAAGTCTAG TTTAAATAGTGGTGAGCAATTAATGTCTAGATATTTAGAGATTTTAAAAAAGTATCCAAT TGCATTCTTTGAAGATCCATTTGGTGAAGATGATTGGGAAAATCATGGTAAAATTACAGC TGCAATTGGTAATAAAATTCAAATCATTGGTGATGATTTACTTTGTACAAATCCAGAAAG AATTAAAAAAGCAATTTCTGAGAAAACTGTAAATTCATTATTATTGAAAATAAATCAAAT CGGTACACTAACTGAAACTATTGAAGCTGCAAAACTTGCAAAAGAAGCTGGTTGGGGTTG TTTAGTTAGTCATCGTTCAGGTGAAACTGATGATCATTTCATTGCTGATCTTGTAGTTGG TCTTGGTACTGGTNAAATAAAATCTGGTGCACCTTGTAGATTTGAAAGATTATCAAAATA TAATAGATTAATAAAATGAAGAAGAACTTAAAAACTTCATAGATCAAAGGTATTCATT
sequence update	2001. 6. 1
Translated Amino Acid sequence	ixfKMSIEXIKAREILDSRGNPTLEVEVWTSEGMFSAKVPSGASTGIHEAFELRDGDK SRYFGYGVLNAIVNVNNLISPTLKGMRVDNQKAIDDKMIELDGTKNKSKLGSNAIVGVSM AVARAAASIKGVPLYRYISQLAGNSNIRLPVPCFNVINGGKHAGNRLPFQEFMLVPIGAP KFKEALRYGSEVYHSLKEIIKERYGLDATNVGD--- ---FCTKFDFTLKKHlcwmlsiiraikmllklvlilllqnfgiqrlqnmiwisridp hislvivvsncldirfksiqlhslkihlvkmigkimvklqlqlvikfkslvmiyf vqiqkelkkqflrklihyykiksvhlkllklqnlqkklvgvvlvivqvklmiisl lillvlvlvknlvhlvdlkdyqniid*neeelknfidqrys
Translated Amino Acid sequence (All Frames)	Frame A: nxiilkneyxnsrnfgrsnirssmdkrnvfsqstkwsinwyssiikrw** kslfwiwcfecncckfnitnieryessksnrndigwykeiktwvqcnrwcin gsgkssrfyrcalvplhftigwkysftstmfcywwktcrttisrvyasthwct kirsialwfrslpftqrdhqgkiwfgcykcwr--- ---vlhqilhpeealtllvdainhsgyqdvikigidsaasefwnpktskydmdfknigs shlksslnsgeqlmsryleilkkypiaffedpfgeddwenhgkitaaignkiqiigddll ctnperikkaisektvnslllkinqigtltetieaaklakeagwgclvshrsgetddhfi adlvvglgtgxiksgapcrferlskynrlikrrtklhrskvfi Frame B: ixfKMSIEXIKAREILDSRGNPTLEVEVWTSEGMFSAKVPSGASTGIHEAFELRDGDK SRYFGYGVLNAIVNVNNLISPTLKGMRVDNQKAIDDKMIELDGTKNKSKLGSNAIVGVSM AVARAAASIKGVPLYRYISQLAGNSNIRLPVPCFNVINGGKHAGNRLPFQEFMLVPIGAP KFKEALRYGSEVYHSLKEIIKERYGLDATNVGD--- ---FCTKFDFTLKKHlcwmlsiiraikmllklvlilllqnfgiqrlqnmiwisridp hislvivvsncldirfksiqlhslkihlvkmigkimvklqlqlvikfkslvmiyf vqiqkelkkqflrklihyykiksvhlkllklqnlqkklvgvvlvivqvklmiisl lillvlvlvknlvhlvdlkdyqniidneeelknfidqrys Frame C: yxnfkkvlnxlklekfwiveviqhklkygqvkecfqpkyqvehqlvfmkhlnemvik vvildmvfmqllmiiyhqhkveliikkqmiklnwmvqrinqnlgpmqslvyqw qwqeqplllkvcpctvtfhnwleivifvyqyhvlmllmvenmqvidyhfkslcyplvhq nlkkhcvmvqkstihskrssrkdmvwmlqmlem--- ---fapnltsprsinsvsgcyqsfglsrcynwyfccfrileskdfkiygfqeyril tfevfkwainvifrdfkkvsncilrsiwrlgkswnyscnwnsnhwftl yksrknksnfenckfiiienksnrytnnyscktckrswlglfsssfrn*sfhc scswswywxnkiwctlikiiki*inkmkknlktsikgih
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value AFB731 (AFB731Q) /CSM/AF/AFB7-B/AFB731Q.Seq.d/ 2535 0.0 AFO218 (AFO218Q) /CSM/AF/AFO2-A/AFO218Q.Seq.d/ 2486 0.0 CFE810 (CFE810Q) /CSM/CF/CFE8-A/CFE810Q.Seq.d/ 1285 0.0 CFJ407 (CFJ407Q) /CSM/CF/CFJ4-A/CFJ407Q.Seq.d/ 1283 0.0 SFK174 (SFK174Q) /CSM/SF/SFK1-D/SFK174Q.Seq.d/ 1249 0.0 CFG491 (CFG491Q) /CSM/CF/CFG4-D/CFG491Q.Seq.d/ 1247 0.0 CFC343 (CFC343Q) /CSM/CF/CFC3-B/CFC343Q.Seq.d/ 1247 0.0 CFH624 (CFH624Q) /CSM/CF/CFH6-A/CFH624Q.Seq.d/ 1239 0.0 CHD848 (CHD848Q) /CSM/CH/CHD8-B/CHD848Q.Seq.d/ 1221 0.0 CFG261 (CFG261Q) /CSM/CF/CFG2-C/CFG261Q.Seq.d/ 1207 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N U09736\|U09736.1 Entamoeba histolytica HM1:IMSS enolase (enl-1) mRNA, complete cds. 56 5e-29 6 BM162118\|BM162118.1 EST564641 PyBS Plasmodium yoelii yoelii cDNA clone PYCKN41 5' end, mRNA sequence. 70 2e-24 4 BM165201\|BM165201.1 EST567724 PyBS Plasmodium yoelii yoelii cDNA clone PYCMI87 5' end, mRNA sequence. 70 3e-24 4 BM166362\|BM166362.1 EST568885 PyBS Plasmodium yoelii yoelii cDNA clone PYCNG69 5' end, mRNA sequence. 70 1e-21 3 BD183625\|BD183625.1 Material for diagnosing malaria and immune antigen for suppressing growth of plasmodium. 58 4e-19 6 BD183626\|BD183626.1 Material for diagnosing malaria and immune antigen for suppressing growth of plasmodium. 58 4e-19 6 U00152\|U00152.1 Plasmodium falciparum enolase gene complete cds. 58 4e-19 6 AB026051\|AB026051.1 Plasmodium falciparum mRNA for enolase, complete cds. 58 4e-19 6 AZ690037\|AZ690037.1 ENTKP77TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 52 9e-18 4 BM164058\|BM164058.1 EST566581 PyBS Plasmodium yoelii yoelii cDNA clone PYCLP21 5' end, mRNA sequence. 70 3e-16 2
dna update	2003. 7.24
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q27727) RecName: Full=Enolase; EC=4.2.1.11; AltName: F... 470 e-131 AM910990_161(AM910990\|pid:none) Plasmodium knowlesi strain H chr... 468 e-130 DQ497988_1(DQ497988\|pid:none) Polypterus senegalus enolase B mRN... 464 e-129 BC054169_1(BC054169\|pid:none) Xenopus laevis enolase 1, alpha, m... 463 e-129 (Q9U615) RecName: Full=Enolase; EC=4.2.1.11; AltName: F... 463 e-129 DQ497985_1(DQ497985\|pid:none) Polypterus senegalus enolase A mRN... 462 e-128 EU306867_1(EU306867\|pid:none) Cavia porcellus alpha-enolase (Eno... 462 e-128 AK290525_1(AK290525\|pid:none) Homo sapiens cDNA FLJ77877 complet... 460 e-128 (P09104) RecName: Full=Gamma-enolase; EC=4.2.1.11; AltN... 460 e-128 (P17183) RecName: Full=Gamma-enolase; EC=4.2.1.11; AltN... 460 e-128
protein update	2009. 3.27
PSORT	psg: 0.56 gvh: 0.44 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 40.0 %: nuclear 8.0 %: mitochondrial 4.0 %: peroxisomal >> prediction for AFB731 is cyt
5' end seq. ID	AFB731F
5' end seq.	>AFB731F.Seq AATATNATAATTTTAAAAAATGAGTATTGAATNAATTAAAGCTAGAGAAATTTTGGATAG TAGAGGTAATCCAACATTAGAAGTTGAAGTATGGACAAGTGAAGGAATGTTTTCAGCCAA AGTACCAAGTGGAGCATCAACTGGTATTCATGAAGCATTTGAATTAAGAGATGGTGATAA AAGTCGTTATTTTGGATATGGTGTTTTGAATGCAATTGTTAATGTAAATAATTTAATATC ACCAACATTGAAAGGTATGAGAGTTGATAATCAAAAAGCAATAGATGATAAAATGATTGA ATTGGATGGTACAAAGAATAAATCAAAACTTGGGTCCAATGCAATCGTTGGTGTATCAAT GGCAGTGGCAAGAGCAGCCGCTTCTATTAAAGGTGTGCCCTTGTACCGTTACATTTCACA ATTGGCTGGAAATAGTAATATTCGTTTACCAGTACCATGTTTTAATGTTATTAATGGTGG AAAACATGCAGGTAATAGACTACCATTTCAAGAGTTTATGCTAGTACCCATTGGTGCACC AAAATTTAAAGAAGCATTGCGTTATGGTTCAGAAGTCTACCATTCACTCAAAGAGATCAT CAAGGAAAGATATGGTTTGGATGCTACAAATGTTGGAGATGA----------
Length of 5' end seq.	642
3' end seq. ID	AFB731Z
3' end seq.	>AFB731Z.Seq ----------GTTTTGCACCAAATTTGACTTCACCCTGAAGAAGCATTAACTCTGTTAGT GGATGCTATCAATCATTCGGGCTATCAAGATGTTATTAAAATTGGTATTGATTCTGCTGC TTCAGAATTTTGGAATCCAAAGACTTCAAAATATGATATGGATTTCAAGAATATAGGATC CTCACATTTGAAGTCTAGTTTAAATAGTGGTGAGCAATTAATGTCTAGATATTTAGAGAT TTTAAAAAAGTATCCAATTGCATTCTTTGAAGATCCATTTGGTGAAGATGATTGGGAAAA TCATGGTAAAATTACAGCTGCAATTGGTAATAAAATTCAAATCATTGGTGATGATTTACT TTGTACAAATCCAGAAAGAATTAAAAAAGCAATTTCTGAGAAAACTGTAAATTCATTATT ATTGAAAATAAATCAAATCGGTACACTAACTGAAACTATTGAAGCTGCAAAACTTGCAAA AGAAGCTGGTTGGGGTTGTTTAGTTAGTCATCGTTCAGGTGAAACTGATGATCATTTCAT TGCTGATCTTGTAGTTGGTCTTGGTACTGGTNAAATAAAATCTGGTGCACCTTGTAGATT TGAAAGATTATCAAAATATAATAGATTAATAAAATGAAGAAGAACTTAAAAACTTCATAG ATCAAAGGTATTCATT
Length of 3' end seq.	666
Connected seq. ID	AFB731P
Connected seq.	>AFB731P.Seq AATATNATAATTTTAAAAAATGAGTATTGAATNAATTAAAGCTAGAGAAATTTTGGATAG TAGAGGTAATCCAACATTAGAAGTTGAAGTATGGACAAGTGAAGGAATGTTTTCAGCCAA AGTACCAAGTGGAGCATCAACTGGTATTCATGAAGCATTTGAATTAAGAGATGGTGATAA AAGTCGTTATTTTGGATATGGTGTTTTGAATGCAATTGTTAATGTAAATAATTTAATATC ACCAACATTGAAAGGTATGAGAGTTGATAATCAAAAAGCAATAGATGATAAAATGATTGA ATTGGATGGTACAAAGAATAAATCAAAACTTGGGTCCAATGCAATCGTTGGTGTATCAAT GGCAGTGGCAAGAGCAGCCGCTTCTATTAAAGGTGTGCCCTTGTACCGTTACATTTCACA ATTGGCTGGAAATAGTAATATTCGTTTACCAGTACCATGTTTTAATGTTATTAATGGTGG AAAACATGCAGGTAATAGACTACCATTTCAAGAGTTTATGCTAGTACCCATTGGTGCACC AAAATTTAAAGAAGCATTGCGTTATGGTTCAGAAGTCTACCATTCACTCAAAGAGATCAT CAAGGAAAGATATGGTTTGGATGCTACAAATGTTGGAGATGA----------GTTTTGCA CCAAATTTGACTTCACCCTGAAGAAGCATTAACTCTGTTAGTGGATGCTATCAATCATTC GGGCTATCAAGATGTTATTAAAATTGGTATTGATTCTGCTGCTTCAGAATTTTGGAATCC AAAGACTTCAAAATATGATATGGATTTCAAGAATATAGGATCCTCACATTTGAAGTCTAG TTTAAATAGTGGTGAGCAATTAATGTCTAGATATTTAGAGATTTTAAAAAAGTATCCAAT TGCATTCTTTGAAGATCCATTTGGTGAAGATGATTGGGAAAATCATGGTAAAATTACAGC TGCAATTGGTAATAAAATTCAAATCATTGGTGATGATTTACTTTGTACAAATCCAGAAAG AATTAAAAAAGCAATTTCTGAGAAAACTGTAAATTCATTATTATTGAAAATAAATCAAAT CGGTACACTAACTGAAACTATTGAAGCTGCAAAACTTGCAAAAGAAGCTGGTTGGGGTTG TTTAGTTAGTCATCGTTCAGGTGAAACTGATGATCATTTCATTGCTGATCTTGTAGTTGG TCTTGGTACTGGTNAAATAAAATCTGGTGCACCTTGTAGATTTGAAAGATTATCAAAATA TAATAGATTAATAAAATGAAGAAGAACTTAAAAACTTCATAGATCAAAGGTATTCATT
Length of connected seq.	1308
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas