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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHN643
Library VH
(Link to library)
Clone ID VHN643
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15036-1
Original site URL
Representative seq. ID VHN643P
(Link to Original site)
Representative DNA sequence 
>VHN643 (VHN643Q) /CSM/VH/VHN6-B/VHN643Q.Seq.d/
TAAAAATGATTGAAGATAATTATGCTTGGGTTGCAACTTCCACTGAAAAATTAGTTGAAT
TCACTGCTGCAAATTTAAATAATAATAATAATAATAATAATAATAATAGTAATAATAATA
ATAATAATACAAGTTCTACATCAAGATCAAATAGTTTACCAAATGTACCATCAATAACTA
CAACACCAACTCTTCACCATCATCATCATCATCATCAACAACAACAAAGTGGTGTTGGTA
ATAATAATAATGTTAATTCAGGATTTCAAGTTCAATTAAATCAACCATTAGTTGGAATTA
TTATGGGTAGTCAATCAGATTGGGAAACTATGAAATTAGCAGCAAATACATTAACAACAT
TAGGTGTACCATTTGAAACTAGAATTGTATCAGCACATAGAACACCTGATAGATTATTTG
AATATGCAAAAACAGCAAAGAGTAGAGGATTAAAAATTGTGATTGCAGGTGCTGGTGGTG
CTGCTCATTTACCTGGCATGGTTGCTGCATTAACTCCATTGCCTGTATTTGGTGTACCAG
TGCAATCCAAAGCATTGAGTGGTXXXXXXXXXXTATCCAGCAATTNTTAAATCAAATACT
ATGGGTTATGATGGTAAAGGTCAAGTTAAATTAACCGATCAAGTCGATCTTGAACAAGCT
TGGAAAAAGGTTACCTNTGAAACTTGTGCAACCAAAGCAATACTTGAACAATATATAGAG
TTTGAATCAGAAGCATCAGTTATTGTAGCACGTGCTTTAGATGGAACAGAGTTAACCTTC
CCATTGGTTACCAATAAACATCGTAATCATATTTTACGTCAAACCATTGCACCAGCTCAA
TTGCCAGAATATATTCATAAACAAGCCAATGAAATTGGTTTAAAGATTGCTCGTTCCAAT
GGTTTGGTTGGTATTATTGCCGTCGAATTATTTGTAGTGAAAAACAATGAAACAGGTCAA
TACTCTTTAATGGTAAATGAATTGGCACCAAGACCACACAATAGTGGTCATTGGACCATC
GAAGGTTGTGTAACCTCTCAATTTGAACAATTGATTCGTTGTGTTTGTGGTTTGCCTTTG
GGTTCAGTCGATTTCACTAAACGTATAAGTGAAGCTGAATTTATTCAACAACAAATTCCA
CCAATTGTAATGACAAATCTTTTAGGTCAAGAAGTTAACGGTTGGGAAAAAATACTTCAA
ACTAAAGGTTCACATCTTCATATCTATGCTAAAGGTGATGCAAAAGAAGGTCGTAAAATG
GGTCATGTTACTCAACAATAAAAAAAAAATTAAAAAAAATAAAAATAAAATTTAAAATTA
sequence update 2002.10.25
Translated Amino Acid sequence 
KMIEDNYAWVATSTEKLVEFTAANLNNNNNNNNNNSNNNNNNTSSTSRSNSLPNVPSITT
TPTLHHHHHHHQQQQSGVGNNNNVNSGFQVQLNQPLVGIIMGSQSDWETMKLAANTLTTL
GVPFETRIVSAHRTPDRLFEYAKTAKSRGLKIVIAGAGGAAHLPGMVAALTPLPVFGVPV
QSKALSG---

---YPAIXKSNTMGYDGKGQVKLTDQVDLEQAWKKVTXETCATKAILEQYIEFESEASVI
VARALDGTELTFPLVTNKHRNHILRQTIAPAQLPEYIHKQANEIGLKIARSNGLVGIIAV
ELFVVKNNETGQYSLMVNELAPRPHNSGHWTIEGCVTSQFEQLIRCVCGLPLGSVDFTKR
ISEAEFIQQQIPPIVMTNLLGQEVNGWEKILQTKGSHLHIYAKGDAKEGRKMGHVTQQ*k
kn*kk*k*nlkl
Translated Amino Acid sequence (All Frames) 
Frame A:
*k*lkiimlglqlplkn*lnsllqi*iiiiiiiiiiviiiiiiqvlhqdqivyqmyhq*l
qhqlftiiiiiinnnkvvlviiimliqdfkfn*inh*lellwvvnqigkl*n*qqih*qh
*vyhlklelyqhiehlidylnmqkqqrved*kl*lqvlvvlliylawllh*lhclylvyq
cnpkh*v---

---YPAIXKSNTMGYDGKGQVKLTDQVDLEQAWKKVTXETCATKAILEQYIEFESEASVI
VARALDGTELTFPLVTNKHRNHILRQTIAPAQLPEYIHKQANEIGLKIARSNGLVGIIAV
ELFVVKNNETGQYSLMVNELAPRPHNSGHWTIEGCVTSQFEQLIRCVCGLPLGSVDFTKR
ISEAEFIQQQIPPIVMTNLLGQEVNGWEKILQTKGSHLHIYAKGDAKEGRKMGHVTQQ*k
kn*kk*k*nlkl

Frame B:
knd*r*lclgcnfh*kis*ihcckfk****************ykfyikik*ftkctinny
ntnsspsssssstttkwcw****c*frisssikstiswnyyg*sirlgnyeisskyinni
rcti*n*ncist*nt**ii*icknske*rikncdcrcwwccsftwhgccinsiaciwcts
aiqsiew---

---iqqxlnqilwvmmvkvkln*piksilnklgkrlpxklvqpkqylnni*slnqkhqll
*hvl*meqs*pshwlpiniviifyvkplhqlncqnifinkpmklv*rllvpmvwlvllps
nyl**ktmkqvntl*w*mnwhqdhtivvigpskvv*plnlnn*fvvfvvclwvqsislnv
*vklnlfnnkfhql**qif*vkkltvgkkyfklkvhifismlkvmqkkvvkwvmllnnkk
kikknknki*n

Frame C:
KMIEDNYAWVATSTEKLVEFTAANLNNNNNNNNNNSNNNNNNTSSTSRSNSLPNVPSITT
TPTLHHHHHHHQQQQSGVGNNNNVNSGFQVQLNQPLVGIIMGSQSDWETMKLAANTLTTL
GVPFETRIVSAHRTPDRLFEYAKTAKSRGLKIVIAGAGGAAHLPGMVAALTPLPVFGVPV
QSKALSG---

---ssnx*ikyygl*w*rss*inrssrs*tslekgyl*nlcnqsnt*tiyrv*irsisyc
stcfrwnrvnlpigyq*ts*syftsnhctssiariys*tsq*nwfkdcsfqwfgwyycrr
iicsekq*nrsilfngk*igtkttq*wsldhrrlcnlsi*tidslclwfafgfsrfh*ty
k*s*iysttnstncndksfrsrs*rlgkntsn*rftssylc*r*ckrrs*ngscystikk
klkkikikfki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHN643 (VHN643Q) /CSM/VH/VHN6-B/VHN643Q.Seq.d/                       2034   0.0
VHB561 (VHB561Q) /CSM/VH/VHB5-C/VHB561Q.Seq.d/                       1382   0.0
SSK605 (SSK605Q) /CSM/SS/SSK6-A/SSK605Q.Seq.d/                       1364   0.0
VHQ389 (VHQ389Q) /CSM/VH/VHQ3-D/VHQ389Q.Seq.d/                       1348   0.0
SFB103 (SFB103Q) /CSM/SF/SFB1-A/SFB103Q.Seq.d/                       1338   0.0
SFL170 (SFL170Q) /CSM/SF/SFL1-C/SFL170Q.Seq.d/                       1285   0.0
SFE842 (SFE842Q) /CSM/SF/SFE8-B/SFE842Q.Seq.d/                       1263   0.0
VHH651 (VHH651Q) /CSM/VH/VHH6-C/VHH651Q.Seq.d/                       1261   0.0
VFO656 (VFO656Q) /CSM/VF/VFO6-C/VFO656Q.Seq.d/                       1174   0.0
CHS229 (CHS229Q) /CSM/CH/CHS2-B/CHS229Q.Seq.d/                       1108   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ445055) Dictyostelium discoideum cDNA clone:ddv58e12, 3' ...  1388   0.0    1
(BJ437546) Dictyostelium discoideum cDNA clone:ddv34i15, 3' ...  1382   0.0    1
(BJ446759) Dictyostelium discoideum cDNA clone:ddv63b23, 3' ...  1348   0.0    1
(BJ441382) Dictyostelium discoideum cDNA clone:ddv46e14, 3' ...  1261   0.0    1
(BJ397937) Dictyostelium discoideum cDNA clone:dds10d12, 3' ...  1259   0.0    1
(BJ436290) Dictyostelium discoideum cDNA clone:ddv30o14, 3' ...  1174   0.0    1
(BJ398905) Dictyostelium discoideum cDNA clone:dds3e01, 3' e...  1144   0.0    1
(BJ409205) Dictyostelium discoideum cDNA clone:dds39n23, 3' ...  1072   0.0    1
(BJ404870) Dictyostelium discoideum cDNA clone:dds29k20, 3' ...  1043   0.0    1
(BJ352747) Dictyostelium discoideum cDNA clone:dda47d23, 3' ...  1035   0.0    1
dna update 2008.12. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050060_1(AM050060|pid:none) Azospirillum brasilense partial pu...   198   3e-49
CP000699_3106(CP000699|pid:none) Sphingomonas wittichii RW1, com...   190   8e-47
CU234118_1139(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl...   190   1e-46
CP000943_2544(CP000943|pid:none) Methylobacterium sp. 4-46, comp...   187   5e-46
AP009384_2414(AP009384|pid:none) Azorhizobium caulinodans ORS 57...   187   7e-46
CP000774_2062(CP000774|pid:none) Parvibaculum lavamentivorans DS...   186   2e-45
AL009126_674(AL009126|pid:none) Bacillus subtilis subsp. subtili...   184   8e-45
CP000319_1161(CP000319|pid:none) Nitrobacter hamburgensis X14, c...   182   2e-44
CP000463_4055(CP000463|pid:none) Rhodopseudomonas palustris BisA...   182   2e-44
BX572606_164(BX572606|pid:none) Rhodopseudomonas palustris CGA00...   182   3e-44
protein update 2009. 5.17
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VHN643 is cyt
5' end seq. ID VHN643F
5' end seq. 
>VHN643F.Seq
TAAAAATGATTGAAGATAATTATGCTTGGGTTGCAACTTCCACTGAAAAATTAGTTGAAT
TCACTGCTGCAAATTTAAATAATAATAATAATAATAATAATAATAATAGTAATAATAATA
ATAATAATACAAGTTCTACATCAAGATCAAATAGTTTACCAAATGTACCATCAATAACTA
CAACACCAACTCTTCACCATCATCATCATCATCATCAACAACAACAAAGTGGTGTTGGTA
ATAATAATAATGTTAATTCAGGATTTCAAGTTCAATTAAATCAACCATTAGTTGGAATTA
TTATGGGTAGTCAATCAGATTGGGAAACTATGAAATTAGCAGCAAATACATTAACAACAT
TAGGTGTACCATTTGAAACTAGAATTGTATCAGCACATAGAACACCTGATAGATTATTTG
AATATGCAAAAACAGCAAAGAGTAGAGGATTAAAAATTGTGATTGCAGGTGCTGGTGGTG
CTGCTCATTTACCTGGCATGGTTGCTGCATTAACTCCATTGCCTGTATTTGGTGTACCAG
TGCAATCCAAAGCATTGAGTGGTNNNNNNNNNN
Length of 5' end seq. 573
3' end seq. ID VHN643Z
3' end seq. 
>VHN643Z.Seq
NNNNNNNNNNTATCCAGCAATTNTTAAATCAAATACTATGGGTTATGATGGTAAAGGTCA
AGTTAAATTAACCGATCAAGTCGATCTTGAACAAGCTTGGAAAAAGGTTACCTNTGAAAC
TTGTGCAACCAAAGCAATACTTGAACAATATATAGAGTTTGAATCAGAAGCATCAGTTAT
TGTAGCACGTGCTTTAGATGGAACAGAGTTAACCTTCCCATTGGTTACCAATAAACATCG
TAATCATATTTTACGTCAAACCATTGCACCAGCTCAATTGCCAGAATATATTCATAAACA
AGCCAATGAAATTGGTTTAAAGATTGCTCGTTCCAATGGTTTGGTTGGTATTATTGCCGT
CGAATTATTTGTAGTGAAAAACAATGAAACAGGTCAATACTCTTTAATGGTAAATGAATT
GGCACCAAGACCACACAATAGTGGTCATTGGACCATCGAAGGTTGTGTAACCTCTCAATT
TGAACAATTGATTCGTTGTGTTTGTGGTTTGCCTTTGGGTTCAGTCGATTTCACTAAACG
TATAAGTGAAGCTGAATTTATTCAACAACAAATTCCACCAATTGTAATGACAAATCTTTT
AGGTCAAGAAGTTAACGGTTGGGAAAAAATACTTCAAACTAAAGGTTCACATCTTCATAT
CTATGCTAAAGGTGATGCAAAAGAAGGTCGTAAAATGGGTCATGTTACTCAACAATAAAA
AAAAAATTAAAAAAAATAAAAATAAAATTTAAAATTA
Length of 3' end seq. 757
Connected seq. ID VHN643P
Connected seq. 
>VHN643P.Seq
TAAAAATGATTGAAGATAATTATGCTTGGGTTGCAACTTCCACTGAAAAATTAGTTGAAT
TCACTGCTGCAAATTTAAATAATAATAATAATAATAATAATAATAATAGTAATAATAATA
ATAATAATACAAGTTCTACATCAAGATCAAATAGTTTACCAAATGTACCATCAATAACTA
CAACACCAACTCTTCACCATCATCATCATCATCATCAACAACAACAAAGTGGTGTTGGTA
ATAATAATAATGTTAATTCAGGATTTCAAGTTCAATTAAATCAACCATTAGTTGGAATTA
TTATGGGTAGTCAATCAGATTGGGAAACTATGAAATTAGCAGCAAATACATTAACAACAT
TAGGTGTACCATTTGAAACTAGAATTGTATCAGCACATAGAACACCTGATAGATTATTTG
AATATGCAAAAACAGCAAAGAGTAGAGGATTAAAAATTGTGATTGCAGGTGCTGGTGGTG
CTGCTCATTTACCTGGCATGGTTGCTGCATTAACTCCATTGCCTGTATTTGGTGTACCAG
TGCAATCCAAAGCATTGAGTGGT----------TATCCAGCAATTNTTAAATCAAATACT
ATGGGTTATGATGGTAAAGGTCAAGTTAAATTAACCGATCAAGTCGATCTTGAACAAGCT
TGGAAAAAGGTTACCTNTGAAACTTGTGCAACCAAAGCAATACTTGAACAATATATAGAG
TTTGAATCAGAAGCATCAGTTATTGTAGCACGTGCTTTAGATGGAACAGAGTTAACCTTC
CCATTGGTTACCAATAAACATCGTAATCATATTTTACGTCAAACCATTGCACCAGCTCAA
TTGCCAGAATATATTCATAAACAAGCCAATGAAATTGGTTTAAAGATTGCTCGTTCCAAT
GGTTTGGTTGGTATTATTGCCGTCGAATTATTTGTAGTGAAAAACAATGAAACAGGTCAA
TACTCTTTAATGGTAAATGAATTGGCACCAAGACCACACAATAGTGGTCATTGGACCATC
GAAGGTTGTGTAACCTCTCAATTTGAACAATTGATTCGTTGTGTTTGTGGTTTGCCTTTG
GGTTCAGTCGATTTCACTAAACGTATAAGTGAAGCTGAATTTATTCAACAACAAATTCCA
CCAATTGTAATGACAAATCTTTTAGGTCAAGAAGTTAACGGTTGGGAAAAAATACTTCAA
ACTAAAGGTTCACATCTTCATATCTATGCTAAAGGTGATGCAAAAGAAGGTCGTAAAATG
GGTCATGTTACTCAACAATAAAAAAAAAATTAAAAAAAATAAAAATAAAATTTAAAATTA
Length of connected seq. 1310
Full length Seq ID -
Full length Seq. -
Length of full length seq. -