NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFO676
Library AF
(Link to library)
Clone ID AFO676
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16245-1
Original site URL
Representative seq. ID AFO676E
(Link to Original site)
Representative DNA sequence 
>AFO676 (AFO676Q) /CSM/AF/AFO6-D/AFO676Q.Seq.d/
CACTGTTGGCCTACTGGGNAAGTTACAGCATCTAAAATTGCATCAGCAAAATAGTCTATA
TTTTTATTATTTAAACCAGCTAAAGAAACTCTACCACTACCTAAAAGATAAATATGATAT
TTATTTACAAGGATATCAACTTGTGGTTTGGTTAAACCTGTATAGGTGAACATACCAATT
TGATTGACGATATGTTCCCAATTACCTGGTACTTTACGGGCGATGAGAGCATCTAAAACC
TTTTGACGAACATCTTTGATTCTACCAGACATTTCTTTAAGTTCTTTGACCCAAAGTGCA
GTTAATTCTGGGTCAGAGAGAACGGTGGTGACGAGACGAGCACCATGGGTTGGTGGGGAG
GAGTACATTGCACGGATATCCATTTTGAGTTGAGATAACATCTTTGGAATTACATCTTCA
CGATGAGAAACAATGGTGAGGGCACCAGTTCTTTCACCATAGAGACCGAAGTTCTTGGAG
TATGATTGAGCAGAGAACATCTCGAAACCACGATTTAAAAAGAGACGTGCACTGTAAGCA
TCGTAGTCCAAATCACCACTTGCATAGCCTTGATAGGCGCAATCCATGAATGGGATATGG
TTCTTTTCTCTCATGACATCGGCGATGATATTCCATTGCTCGTGGGTTGGGTCGACACCA
GTTGGGTTGTGGGCGCAGAGATGCAACACAAAGACACTGCCATTTGGGGCGGCTCTCATA
TCGTTGATCATGCCAGTGAAATCCAAACCCTTGGTCTTTGGATCGTAGTAGGCGTATTCG
GCCGATTGGACACCACTCTCCTTGCAAATGTTATGATGATTGGTCCATGATGGACGTGAA
ATGTACACTACGGTACCGGCTGGTAAATATTTACGAATGAAAATGATACCAATACGTAAT
GCACCGGTACCTGACAATGCTTGAACTGTTACCATTCTCTTCTCTTTGCCAACCATTGCA
TCTCCATATAAAAGTTTGGCTGATAATTTATTGAACTCTGGAATACCATCGATTGGGAGA
TACTCTTTTGGTGCTCCCAATAATCTTTTCTCTGCTTCAAATACACATTTCAATACGTAT
GGTTTACCATTTTCATCTCTATATGCTCCAACTGATGTATCTACTTTTCTTGGGTCAGTG
TCTGCTTTGAAAGCTGTTGAAACACCTAAAATTGGATCTACTGGTCCTAATGGTACATTT
GCAAATAAAGTTGCTACTTGACCACTAACTTCATTTGAATTTATTGAATCTTGCATATTA
TTATTATCTATNGTACAAATAAAGAATTTT
sequence update 2001. 6. 9
Translated Amino Acid sequence 
llaywxsysi*nciskivyifii*ts*rnsttt*kinmifiykdinlwfg*tcigehtnl
iddmfpitwyftgdesi*nlltnifdstrhffkffdpkcs*fwvrenggdetstmgwwgg
vhctdihfelr*hlwnyiftmrnngegtssftietevlgv*lsrehletti*KETCTVSI
VVQITTCIALIGAIHEWDMVLFSHDIGDDIPLLVGWVDTSWVVGAEMQHKDTAIWGGSHI
VDHASEIQTLGLWIVVGVFGRLDTTLLANVMMIGP*wt*nvhygtgw*iftnendtnt*c
tgt*qclncyhsllfanhcisi*kfg**fielwntidweilfwcsq*sflcfkytfqyvw
ftifisicsn*ciyfswvsvcfesc*nt*nwiyws*wyick*scylttnfi*iy*ilhii
iiyxtnkef
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgxvtaskiasak*sifllfkpaketlplpkr*i*ylftristcglvkpv*vnipi
*lticsqlpgtlramrasktf*rtslilpdislssltqsavnsgsertvvtrrapwvgge
eyiarisils*dnifgitssr*etmvrapvlsp*rpkfleyd*aeniskprfkkrral*a
s*skspla*p**aqsmngiwffslmtsamifhcswvgstpvglwaqrcntktlpfgaali
slimpvkskplvfgs**aysadwtplslqml**lvhdgremyttvpagkylrmkmipirn
apvpdna*tvtilfslptiaspyksladnllnsgipsigrysfgapnnlfsasnthfnty
glpfsslyaptdvstflgsvsalkavetpkigstgpngtfankvat*pltsfefiescil
llsxvqiknf


Frame B:
tvgllgklqhlklhqqnslyfyylnqlkklyhylkdkydiylqgyqlvvwlnlyr*tyqf
d*ryvpnylvlygr*ehlkpfdehl*fyqtfl*vl*pkvqlilgqrerw*rdehhglvgr
stlhgypf*veitslelhlhdekqw*ghqffhhrdrsswsmieqrtsrnhdlkrdvhckh
rspnhhlhsldrrnp*mgygsfls*hrr*ysiarglgrhqlgcgrrdatqrhchlgrlsy
r*scq*npnpwsldrsrrirpighhspckcyddwsmmdvkctlryrlvniye*k*yqyvm
hryltmlellpfsslcqplhlhikvwliiy*tleyhrlgdtllvlpiifsllqihisirm
vyhfhlymlqlmyllflgqcll*kllkhlkldllvlmvhlqikllldh*lhlnllnlayy
yylxyk*ri


Frame C:
llaywxsysi*nciskivyifii*ts*rnsttt*kinmifiykdinlwfg*tcigehtnl
iddmfpitwyftgdesi*nlltnifdstrhffkffdpkcs*fwvrenggdetstmgwwgg
vhctdihfelr*hlwnyiftmrnngegtssftietevlgv*lsrehletti*KETCTVSI
VVQITTCIALIGAIHEWDMVLFSHDIGDDIPLLVGWVDTSWVVGAEMQHKDTAIWGGSHI
VDHASEIQTLGLWIVVGVFGRLDTTLLANVMMIGP*wt*nvhygtgw*iftnendtnt*c
tgt*qclncyhsllfanhcisi*kfg**fielwntidweilfwcsq*sflcfkytfqyvw
ftifisicsn*ciyfswvsvcfesc*nt*nwiyws*wyick*scylttnfi*iy*ilhii
iiyxtnkef
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFO676 (AFO676Q) /CSM/AF/AFO6-D/AFO676Q.Seq.d/                       2545   0.0
VFM287 (VFM287Q) /CSM/VF/VFM2-D/VFM287Q.Seq.d/                       2407   0.0
VFJ242 (VFJ242Q) /CSM/VF/VFJ2-B/VFJ242Q.Seq.d/                       2407   0.0
VFD222 (VFD222Q) /CSM/VF/VFD2-A/VFD222Q.Seq.d/                       1754   0.0
SFI736 (SFI736Q) /CSM/SF/SFI7-B/SFI736Q.Seq.d/                       1439   0.0
CFI814 (CFI814Q) /CSM/CF/CFI8-A/CFI814Q.Seq.d/                       1437   0.0
CFF142 (CFF142Q) /CSM/CF/CFF1-B/CFF142Q.Seq.d/                       1419   0.0
SLE206 (SLE206Q) /CSM/SL/SLE2-A/SLE206Q.Seq.d/                       1405   0.0
AFH644 (AFH644Q) /CSM/AF/AFH6-B/AFH644Q.Seq.d/                       1405   0.0
VFM818 (VFM818Q) /CSM/VF/VFM8-A/VFM818Q.Seq.d/                       1403   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AY081506|AY081506.1 Arabidopsis thaliana aspartate aminotransferase (At4g31990) mRNA, complete cds.    40  0.001  4
AY087266|AY087266.1 Arabidopsis thaliana clone 33414 mRNA, complete sequence.    40  0.001  4
X81026|X81026.1 A.thaliana aat1 mRNA.                             40  0.002  4
AY084314|AY084314.1 Arabidopsis thaliana clone 103854 mRNA, complete sequence.    40  0.002  4
CB256284|CB256284.1 85-E011583-027-006-J22-T7R MPIZ-ADIS-027 Arabidopsis thaliana cDNA clone MPIZp772J226Q 5-PRIME, mRNA sequence.    40  0.004  3
AU001466|AU001466.1 Bombyx mori cDNA, clone fbm0460f.             54  0.004  1
BT009009|BT009009.1 Triticum aestivum clone wdk3c.pk005.b17:fis, full insert mRNA sequence.    52  0.018  1
BE429004|BE429004.1 MTD013.C02F990621 ITEC MTD Durum Wheat Root Library Triticum turgidum subsp. durum cDNA clone MTD013.C02, mRNA sequence.    52  0.018  1
BE429103|BE429103.1 MTD014.D09F990621 ITEC MTD Durum Wheat Root Library Triticum turgidum subsp. durum cDNA clone MTD014.D09, mRNA sequence.    52  0.018  1
BC047800|BC047800.1 Danio rerio, clone MGC:55996 IMAGE:3819704, mRNA, complete cds.    42  0.041  2
dna update 2003. 9.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54SF7) RecName: Full=Aspartate aminotransferase, cytoplasmic; ...   844   0.0
AY157306_1(AY157306|pid:none) Oryza sativa aspartate aminotransf...   427   e-118
D45076_1(D45076|pid:none) Panicum miliaceum mRNA for plastidic a...   425   e-117
(P26563) RecName: Full=Aspartate aminotransferase P2, mitochondr...   421   e-116
GN122162_1(GN122162|pid:none) Sequence 5058 from Patent WO200903...   421   e-116
AE017353_89(AE017353|pid:none) Cryptococcus neoformans var. neof...   420   e-116
GN122160_1(GN122160|pid:none) Sequence 5056 from Patent WO200903...   419   e-115
GN122078_1(GN122078|pid:none) Sequence 4974 from Patent WO200903...   418   e-115
AK316993_1(AK316993|pid:none) Arabidopsis thaliana AT4G31990 mRN...   416   e-115
AM466384_3(AM466384|pid:none) Vitis vinifera contig VV78X097971....   416   e-115
protein update 2009. 6.29
PSORT 

 psg: 0.94  gvh: 0.56  alm: 0.25  top: 0.20  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for AFO676 is end
5' end seq. ID AFO676F
5' end seq. 
>AFO676F.Seq
CACTGTTGGCCTACTGGGNAAGTTACAGCATCTAAAATTGCATCAGCAAAATAGTCTATA
TTTTTATTATTTAAACCAGCTAAAGAAACTCTACCACTACCTAAAAGATAAATATGATAT
TTATTTACAAGGATATCAACTTGTGGTTTGGTTAAACCTGTATAGGTGAACATACCAATT
TGATTGACGATATGTTCCCAATTACCTGGTACTTTACGGGCGATGAGAGCATCTAAAACC
TTTTGACGAACATCTTTGATTCTACCAGACATTTCTTTAAGTTCTTTGACCCAAAGTGCA
GTTAATTCTGGGTCAGAGAGAACGGTGGTGACGAGACGAGCACCATGGGTTGGTGGGGAG
GAGTACATTGCACGGATATCCATTTTGAGTTGAGATAACATCTTTGGAATTACATCTTCA
CGATGAGAAACAATGGTGAGGGCACCAGTTCTTTCACCATAGAGACCGAAGTTCTTGGAG
TATGATTGAGCAGAGAACATCTCGAAACCACGATTTAAAAAGAGACGTGCACTGTAAGCA
TCGTAGTCCAAATCACCACTTGCATAGCCTTGATAGGCGCAATCCATGAATGGGATATGG
NTCTTTTCTCTCATGACATCGGCGATGATATTCCAT----------
Length of 5' end seq. 636
3' end seq. ID AFO676Z
3' end seq. 
>AFO676Z.Seq
----------AGTCCAAATCACCACTTGCATAGCCTTGATAGGCGCAATCCATGAATGGG
ATATGGTTCTTTTCTCTCATGACATCGGCGATGATATTCCATTGCTCGTGGGTTGGGTCG
ACACCAGTTGGGTTGTGGGCGCAGAGATGCAACACAAAGACACTGCCATTTGGGGCGGCT
CTCATATCGTTGATCATGCCAGTGAAATCCAAACCCTTGGTCTTTGGATCGTAGTAGGCG
TATTCGGCCGATTGGACACCACTCTCCTTGCAAATGTTATGATGATTGGTCCATGATGGA
CGTGAAATGTACACTACGGTACCGGCTGGTAAATATTTACGAATGAAAATGATACCAATA
CGTAATGCACCGGTACCTGACAATGCTTGAACTGTTACCATTCTCTTCTCTTTGCCAACC
ATTGCATCTCCATATAAAAGTTTGGCTGATAATTTATTGAACTCTGGAATACCATCGATT
GGGAGATACTCTTTTGGTGCTCCCAATAATCTTTTCTCTGCTTCAAATACACATTTCAAT
ACGTATGGTTTACCATTTTCATCTCTATATGCTCCAACTGATGTATCTACTTTTCTTGGG
TCAGTGTCTGCTTTGAAAGCTGTTGAAACACCTAAAATTGGATCTACTGGTCCTAATGGT
ACATTTGCAAATAAAGTTGCTACTTGACCACTAACTTCATTTGAATTTATTGAATCTTGC
ATATTATTATTATCTATNGTACAAATAAAGAATTTT
Length of 3' end seq. 746
Connected seq. ID AFO676P
Connected seq. 
>AFO676P.Seq
CACTGTTGGCCTACTGGGNAAGTTACAGCATCTAAAATTGCATCAGCAAAATAGTCTATA
TTTTTATTATTTAAACCAGCTAAAGAAACTCTACCACTACCTAAAAGATAAATATGATAT
TTATTTACAAGGATATCAACTTGTGGTTTGGTTAAACCTGTATAGGTGAACATACCAATT
TGATTGACGATATGTTCCCAATTACCTGGTACTTTACGGGCGATGAGAGCATCTAAAACC
TTTTGACGAACATCTTTGATTCTACCAGACATTTCTTTAAGTTCTTTGACCCAAAGTGCA
GTTAATTCTGGGTCAGAGAGAACGGTGGTGACGAGACGAGCACCATGGGTTGGTGGGGAG
GAGTACATTGCACGGATATCCATTTTGAGTTGAGATAACATCTTTGGAATTACATCTTCA
CGATGAGAAACAATGGTGAGGGCACCAGTTCTTTCACCATAGAGACCGAAGTTCTTGGAG
TATGATTGAGCAGAGAACATCTCGAAACCACGATTTAAAAAGAGACGTGCACTGTAAGCA
TCGTAGTCCAAATCACCACTTGCATAGCCTTGATAGGCGCAATCCATGAATGGGATATGG
NTCTTTTCTCTCATGACATCGGCGATGATATTCCAT----------AGTCCAAATCACCA
CTTGCATAGCCTTGATAGGCGCAATCCATGAATGGGATATGGTTCTTTTCTCTCATGACA
TCGGCGATGATATTCCATTGCTCGTGGGTTGGGTCGACACCAGTTGGGTTGTGGGCGCAG
AGATGCAACACAAAGACACTGCCATTTGGGGCGGCTCTCATATCGTTGATCATGCCAGTG
AAATCCAAACCCTTGGTCTTTGGATCGTAGTAGGCGTATTCGGCCGATTGGACACCACTC
TCCTTGCAAATGTTATGATGATTGGTCCATGATGGACGTGAAATGTACACTACGGTACCG
GCTGGTAAATATTTACGAATGAAAATGATACCAATACGTAATGCACCGGTACCTGACAAT
GCTTGAACTGTTACCATTCTCTTCTCTTTGCCAACCATTGCATCTCCATATAAAAGTTTG
GCTGATAATTTATTGAACTCTGGAATACCATCGATTGGGAGATACTCTTTTGGTGCTCCC
AATAATCTTTTCTCTGCTTCAAATACACATTTCAATACGTATGGTTTACCATTTTCATCT
CTATATGCTCCAACTGATGTATCTACTTTTCTTGGGTCAGTGTCTGCTTTGAAAGCTGTT
GAAACACCTAAAATTGGATCTACTGGTCCTAATGGTACATTTGCAAATAAAGTTGCTACT
TGACCACTAACTTCATTTGAATTTATTGAATCTTGCATATTATTATTATCTATNGTACAA
ATAAAGAATTTT
Length of connected seq. 1382
Full length Seq ID AFO676E
Full length Seq. 
>AFO676E.Seq
CACTGTTGGCCTACTGGGNAAGTTACAGCATCTAAAATTGCATCAGCAAAATAGTCTATA
TTTTTATTATTTAAACCAGCTAAAGAAACTCTACCACTACCTAAAAGATAAATATGATAT
TTATTTACAAGGATATCAACTTGTGGTTTGGTTAAACCTGTATAGGTGAACATACCAATT
TGATTGACGATATGTTCCCAATTACCTGGTACTTTACGGGCGATGAGAGCATCTAAAACC
TTTTGACGAACATCTTTGATTCTACCAGACATTTCTTTAAGTTCTTTGACCCAAAGTGCA
GTTAATTCTGGGTCAGAGAGAACGGTGGTGACGAGACGAGCACCATGGGTTGGTGGGGAG
GAGTACATTGCACGGATATCCATTTTGAGTTGAGATAACATCTTTGGAATTACATCTTCA
CGATGAGAAACAATGGTGAGGGCACCAGTTCTTTCACCATAGAGACCGAAGTTCTTGGAG
TATGATTGAGCAGAGAACATCTCGAAACCACGATTTAAAAAGAGACGTGCACTGTAAGCA
TCGTAGTCCAAATCACCACTTGCATAGCCTTGATAGGCGCAATCCATGAATGGGATATGG
TTCTTTTCTCTCATGACATCGGCGATGATATTCCATTGCTCGTGGGTTGGGTCGACACCA
GTTGGGTTGTGGGCGCAGAGATGCAACACAAAGACACTGCCATTTGGGGCGGCTCTCATA
TCGTTGATCATGCCAGTGAAATCCAAACCCTTGGTCTTTGGATCGTAGTAGGCGTATTCG
GCCGATTGGACACCACTCTCCTTGCAAATGTTATGATGATTGGTCCATGATGGACGTGAA
ATGTACACTACGGTACCGGCTGGTAAATATTTACGAATGAAAATGATACCAATACGTAAT
GCACCGGTACCTGACAATGCTTGAACTGTTACCATTCTCTTCTCTTTGCCAACCATTGCA
TCTCCATATAAAAGTTTGGCTGATAATTTATTGAACTCTGGAATACCATCGATTGGGAGA
TACTCTTTTGGTGCTCCCAATAATCTTTTCTCTGCTTCAAATACACATTTCAATACGTAT
GGTTTACCATTTTCATCTCTATATGCTCCAACTGATGTATCTACTTTTCTTGGGTCAGTG
TCTGCTTTGAAAGCTGTTGAAACACCTAAAATTGGATCTACTGGTCCTAATGGTACATTT
GCAAATAAAGTTGCTACTTGACCACTAACTTCATTTGAATTTATTGAATCTTGCATATTA
TTATTATCTATNGTACAAATAAAGAATTTT
Length of full length seq. 1290