AFO670
Library AF
(Link to library)
Clone ID AFO670
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15664-1
Original site URL
Representative seq. ID AFO670Z
(Link to Original site)
Representative DNA sequence
>AFO670 (AFO670Q) /CSM/AF/AFO6-C/AFO670Q.Seq.d/
XXXXXXXXXXGGTTCAATAATTGATCTTCAGGTATTAAATCATATTCATTTGCAAAAGAT
TGAATTTGGTTTAGAAGTTACAAATCGTATTAATACTGATTCAACTGGTGGTATTTTAAT
GTCATATAAAGATAAACTTCATCTTTTGGAATTATCTCAAGTTAAACCAGAGAAATTAAA
GATCTTTAAAGATTTTAAACTTTGGAATACAAATAATATTTGGGTTAATTTGAAATCAGT
TTCAAATTTAATTAAAGAAGATAAATTAGATTTAGATTGGATTGTTAATTATCCACTTGA
AAATCATAAAGCAATGGTACAATTAGAAACACCAGCAGGTATGGGTATTCAAAATTTTAA
GAATTCAGTTGCAATTTTTGTACCACGTGATAGATATCGTCCAATTAAATCAACAAGTCA
ATTATTGGTTGCACAATCAAATATTTTCCAATTTGATCATGGTCAAGTTAAATTAAATTC
AAAGAGAGAAGGTCAAGATGTACCACTTGTTAAATTGGGTGAAGAATTTTCAACAGTTTC
AGATTATGAAAAGAGATTTAAATCAATTCCAGATTTATTGGAATTGGATCATCTTACTGT
TTCTGGTGATGTTTACTTTGGTTCAAGAATTACTCTTAAAGGTACAGTCATTATTGTAGC
TAATCATGGTGAACGTGTTGATATTCCAGATGGTGTGGTTTTAGAAAATAAAGT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---SIIDLQVLNHIHLQKIEFGLEVTNRINTDSTGGILMSYKDKLHLLELSQVKPEKLKI
FKDFKLWNTNNIWVNLKSVSNLIKEDKLDLDWIVNYPLENHKAMVQLETPAGMGIQNFKN
SVAIFVPRDRYRPIKSTSQLLVAQSNIFQFDHGQVKLNSKREGQDVPLVKLGEEFSTVSD
YEKRFKSIPDLLELDHLTVSGDVYFGSRITLKGTVIIVANHGERVDIPDGVVLENK


Translated Amino Acid sequence (All Frames)
Frame A:
---vq*lifry*iifickrlnlv*klqivliliqlvvf*chikinfifwnylklnqrn*r
slkilnfgiqiifgli*nqfqi*lkkin*i*iglliihlkiikqwyn*khqqvwvfkilr
iqlqflyhvidivqlnqqvnywlhnqifsnlimvkln*iqrekvkmyhllnwvknfqqfq
imkrdlnqfqiywnwiillflvmftlvqelllkvqsll*limvnvlifqmvwf*kik


Frame B:
---fnn*ssgiksysfakd*iwfrsyksy*y*fnwwyfnvi*r*tssfgiiss*treikd
l*rf*tleyk*ylg*feisfkfn*rr*irfrldc*lst*ks*sngtirntsrygyskf*e
fscnfctt**issn*inksiigctikyfpi*swss*ikfkerrsrcttc*ig*rifnsfr
l*kei*insrfigigssycfw*cllwfknys*ryshycs*sw*tc*ysrwcgfrk*s


Frame C:
---SIIDLQVLNHIHLQKIEFGLEVTNRINTDSTGGILMSYKDKLHLLELSQVKPEKLKI
FKDFKLWNTNNIWVNLKSVSNLIKEDKLDLDWIVNYPLENHKAMVQLETPAGMGIQNFKN
SVAIFVPRDRYRPIKSTSQLLVAQSNIFQFDHGQVKLNSKREGQDVPLVKLGEEFSTVSD
YEKRFKSIPDLLELDHLTVSGDVYFGSRITLKGTVIIVANHGERVDIPDGVVLENK


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFF616 (SFF616Q) /CSM/SF/SFF6-A/SFF616Q.Seq.d/ 1396 0.0
SFE738 (SFE738Q) /CSM/SF/SFE7-B/SFE738Q.Seq.d/ 1396 0.0
SFE654 (SFE654Q) /CSM/SF/SFE6-C/SFE654Q.Seq.d/ 1396 0.0
SFD222 (SFD222Q) /CSM/SF/SFD2-A/SFD222Q.Seq.d/ 1396 0.0
CFJ859 (CFJ859Q) /CSM/CF/CFJ8-C/CFJ859Q.Seq.d/ 1396 0.0
CFJ831 (CFJ831Q) /CSM/CF/CFJ8-B/CFJ831Q.Seq.d/ 1396 0.0
CFJ629 (CFJ629Q) /CSM/CF/CFJ6-B/CFJ629Q.Seq.d/ 1396 0.0
CFI649 (CFI649Q) /CSM/CF/CFI6-C/CFI649Q.Seq.d/ 1396 0.0
CFI527 (CFI527Q) /CSM/CF/CFI5-B/CFI527Q.Seq.d/ 1396 0.0
CFH496 (CFH496Q) /CSM/CF/CFH4-D/CFH496Q.Seq.d/ 1396 0.0

own update 2002.11. 5
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

Y00145|Y00145.1 Dictyostelium discoideum UDP glucose pyrophosphorylase gene (UDPGP; EC 2.7.7.9). 831 0.0 3
AF150929|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds. 50 3e-05 3
BI322718|BI322718.1 kx15d03.y3 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence. 36 0.028 2
AX348530|AX348530.1 Sequence 38 from Patent WO0202809. 50 0.038 1
AX251260|AX251260.1 Sequence 228 from Patent WO0168912. 30 0.054 5
AC069520|AC069520.9 Homo sapiens chromosome 3 clone RP11-269A14, WORKING DRAFT SEQUENCE, 6 unordered pieces. 48 0.15 1
AC021393|AC021393.10 Homo sapiens chromosome 8, clone RP11-27P7, complete sequence. 48 0.15 1
AC098372|AC098372.6 Rattus norvegicus clone CH230-2D2, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 52 0.19 3
BZ400287|BZ400287.1 EINCU18TF EI_10_12_KB Entamoeba invadens genomic clone EINCU18, DNA sequence. 34 0.19 3
BI743473|BI743473.1 kx44f12.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence. 36 0.31 2
dna update 2003. 9.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P08800) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer... 467 e-130
S35692(S35692)UTP-glucose-1-phosphate uridylyltransferase (EC 2.... 234 2e-60
S62599(S62599)UTP-glucose-1-phosphate uridylyltransferase (EC 2.... 234 2e-60
AK300731_1(AK300731|pid:none) Homo sapiens cDNA FLJ56155 complet... 234 2e-60
BC084711_1(BC084711|pid:none) Rattus norvegicus UDP-glucose pyro... 234 2e-60
BC026626_1(BC026626|pid:none) Mus musculus UDP-glucose pyrophosp... 233 3e-60
(Q91ZJ5) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer... 233 3e-60
AK153885_1(AK153885|pid:none) Mus musculus 2 days neonate thymus... 233 3e-60
(Q54YZ0) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer... 233 4e-60
CR860388_1(CR860388|pid:none) Pongo abelii mRNA; cDNA DKFZp459A0... 233 4e-60
protein update 2009. 4.26
PSORT

psg: 0.75 gvh: 0.40 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for AFO670 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFO670Z
3' end seq.
>AFO670Z.Seq
----------GGTTCAATAATTGATCTTCAGGTATTAAATCATATTCATTTGCAAAAGAT
TGAATTTGGTTTAGAAGTTACAAATCGTATTAATACTGATTCAACTGGTGGTATTTTAAT
GTCATATAAAGATAAACTTCATCTTTTGGAATTATCTCAAGTTAAACCAGAGAAATTAAA
GATCTTTAAAGATTTTAAACTTTGGAATACAAATAATATTTGGGTTAATTTGAAATCAGT
TTCAAATTTAATTAAAGAAGATAAATTAGATTTAGATTGGATTGTTAATTATCCACTTGA
AAATCATAAAGCAATGGTACAATTAGAAACACCAGCAGGTATGGGTATTCAAAATTTTAA
GAATTCAGTTGCAATTTTTGTACCACGTGATAGATATCGTCCAATTAAATCAACAAGTCA
ATTATTGGTTGCACAATCAAATATTTTCCAATTTGATCATGGTCAAGTTAAATTAAATTC
AAAGAGAGAAGGTCAAGATGTACCACTTGTTAAATTGGGTGAAGAATTTTCAACAGTTTC
AGATTATGAAAAGAGATTTAAATCAATTCCAGATTTATTGGAATTGGATCATCTTACTGT
TTCTGGTGATGTTTACTTTGGTTCAAGAATTACTCTTAAAGGTACAGTCATTATTGTAGC
TAATCATGGTGAACGTGTTGATATTCCAGATGGTGTGGTTTTAGAAAATAAAGT
Length of 3' end seq. 704
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -