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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHN388
Library VH
(Link to library)
Clone ID VHN388
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16579-1
Original site URL
Representative seq. ID VHN388P
(Link to Original site)
Representative DNA sequence 
>VHN388 (VHN388Q) /CSM/VH/VHN3-D/VHN388Q.Seq.d/
ATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCTTTTTGGTAAGCAGAACTGGCGATGT
GGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGGT
GTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTG
TAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGT
CGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTA
ACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTAG
TAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAAT
GGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTTA
CTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAAG
GGAAGCGGGTTAAAATTCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATCC
GGGACATCAATTGGCGGTCGAGGAANAGTTATCTTTTCTTGTXXXXXXXXXXACCATCCG
TTGGATAANGGCTGAACGCCTTTAAGTCANAATCCATTTTANAAACGCAAACCAAATGCT
TTANAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGNGGGGGNCCNCTTTCAACTTTA
AACCATATGATTAATNGCTGTTACNCTGCAGTTTCCTTCCGGNTATTGTGGNGGGTGGGT
AAATTTTAATTTANATCCTCGTTCCGNTCAGNTTTTNGATTGTAGACGACTATCAAATGA
ACTAGGTGCTGTAAGNTTCCGAGTAGNGTTCAGTTACGAGGGGTTGAGGNTTTTCCNTTA
GTTTTTATCCATAGCCNTTATTTTTTTTTTNTATACATAATACATTACAATATGACACAC
GCATTACCAAAAGTTGTTAAATNTCAACTCGTTCAAGATATTGGAGTTGCCCTTATTTTA
GGTTCAATTGCAGGTTGTTTCTTTAAATATGGCGTTNATAAAAAAAAGCAAAGAGAAAGA
GTTGCTTTCTATAAAAATACGACAAAGAAGACTGTAAAAAAAAAAATTAAAAATTAAATA
AATATAATAANAAACAACTTT
sequence update 2002.10.25
Translated Amino Acid sequence 
camknrss*waflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir*gvc
nnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvfsadldgs
skyskeftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvtl*aer
eag*NSCTIEWDIRVTDRNPGHQLAVEEXLSFL---

---TIRWIXAERL*vxihfxnanqmlxsvnvvgnirllxgxxfql*ti*lxavtlqfpsg
ycggwvnfnlxprsxqxxdcrrlsnelgavxfrvxfsyeglrxfx*flsiaxiffxyt*y
iti*hthyqkllnxnsfkilelplf*vqlqvvslnmaxikkskekellsikirqrrl*kk
klkik*i**xtt
Translated Amino Acid sequence (All Frames) 
Frame A:
mcnek*ellvglfgkqnwrcglnqilg*dv*hslidttkgvsslrqqdgghgsryplrsv
*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefewscl*crs*w*
*qifkriyfegrsgegfhnngihlwvsrs*glg*lslirllghwieseggfntsdfigrk
gsglkflhhrmgy*gnrs*sgtsiggrgxvifsc---

---TIRWIXAERL*vxihfxnanqmlxsvnvvgnirllxgxxfql*ti*lxavtlqfpsg
ycggwvnfnlxprsxqxxdcrrlsnelgavxfrvxfsyeglrxfx*flsiaxiffxyt*y
iti*hthyqkllnxnsfkilelplf*vqlqvvslnmaxikkskekellsikirqrrl*kk
klkik*i**xtt

Frame B:
camknrss*waflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir*gvc
nnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvfsadldgs
skyskeftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvtl*aer
eag*NSCTIEWDIRVTDRNPGHQLAVEEXLSFL---

---psvg*xlnafksxsilxtqtkcfxv*ml*vtlgcwxgxxfnfkpyd*xllxcsflpx
ivxgg*ilixilvpxxfxivddyqmn*vl*xse*xsvtrg*gfsxsfyp*plfffxihnt
lqydtritksc*xstrsrywscpyfrfncrlfl*iwrx*kkakrkscfl*kydkedckkk
n*klnkynxkql

Frame C:
vq*kigalsgpfw*aelamwvepnigirrltftnryhkrc*fiktagrwpwksvsakecv
tthlpnglalkmddassgwsmpnr*kk**yf*rvgrregnvea*m*irvelslvqilmvv
aniqknll*rpkwgrvp*qwnslmgesilrfgltlsnkvtrsldrk*rwl*h**lyrpkg
krvkipapsngilg*pivirdinwrsrxsylfl---

---hpldxg*tplsxnpfxkrkpnalxceccr*h*vvgggplstlnhminxcyxavsfrx
lwxvgkf*fxssfrsxfxl*ttik*trcckxpsxvqlrgvexfplvfihsxyfffxyiih
ynmthalpkvvkxqlvqdigvalilgsiagcffkygvxkkkqrervafyknttkktvkkk
ikn*iniixnnf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHN388 (VHN388Q) /CSM/VH/VHN3-D/VHN388Q.Seq.d/                       2020   0.0
VHP355 (VHP355Q) /CSM/VH/VHP3-C/VHP355Q.Seq.d/                       1253   0.0
VHL615 (VHL615Q) /CSM/VH/VHL6-A/VHL615Q.Seq.d/                       1253   0.0
VHG394 (VHG394Q) /CSM/VH/VHG3-D/VHG394Q.Seq.d/                       1253   0.0
SHE483 (SHE483Q) /CSM/SH/SHE4-D/SHE483Q.Seq.d/                       1253   0.0
CHQ795 (CHQ795Q) /CSM/CH/CHQ7-D/CHQ795Q.Seq.d/                       1253   0.0
VHM465 (VHM465Q) /CSM/VH/VHM4-C/VHM465Q.Seq.d/                       1245   0.0
CHP713 (CHP713Q) /CSM/CH/CHP7-A/CHP713Q.Seq.d/                       1245   0.0
VHO493 (VHO493Q) /CSM/VH/VHO4-D/VHO493Q.Seq.d/                       1239   0.0
VHO324 (VHO324Q) /CSM/VH/VHO3-A/VHO324Q.Seq.d/                       1239   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ426047) Dictyostelium discoideum cDNA clone:ddv57p21, 5' ...  1267   0.0    1
(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1199   0.0    2
(BJ427212) Dictyostelium discoideum cDNA clone:ddv61n13, 5' ...  1199   0.0    2
(BJ424961) Dictyostelium discoideum cDNA clone:ddv54m04, 5' ...  1199   0.0    2
(BJ422828) Dictyostelium discoideum cDNA clone:ddv47m02, 5' ...  1199   0.0    2
(BJ421809) Dictyostelium discoideum cDNA clone:ddv43l23, 5' ...  1199   0.0    2
(BJ393837) Dictyostelium discoideum cDNA clone:dds32f22, 5' ...  1199   0.0    2
(BJ393086) Dictyostelium discoideum cDNA clone:dds30e05, 5' ...  1199   0.0    1
(BJ370917) Dictyostelium discoideum cDNA clone:ddc55n23, 5' ...  1199   0.0    2
(BJ369453) Dictyostelium discoideum cDNA clone:ddc50j16, 5' ...  1199   0.0    2
dna update 2008.12. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P20610) RecName: Full=Cytochrome c oxidase subunit 7s;         ...    92   5e-17
Z30963_1(Z30963|pid:none) D.discoideum (AX3) cox7s gene for cyto...    69   4e-10
B34254(B34254)cytochrome-c oxidase (EC 1.9.3.1) chain VIIs - sli...    65   6e-09
CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    64   1e-08
U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo...    45   3e-05
EU955547_1(EU955547|pid:none) Zea mays clone 1536647 hypothetica...    45   0.007
(P20609) RecName: Full=Cytochrome c oxidase subunit 7e;         ...    44   0.012
(O94705) RecName: Full=Cytochrome c oxidase subunit 7A;         ...    35   4.2
protein update 2009. 3.16
PSORT 

 psg: 0.75  gvh: 0.55  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for VHN388 is cyt
5' end seq. ID VHN388F
5' end seq. 
>VHN388F.Seq
ATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCTTTTTGGTAAGCAGAACTGGCGATGT
GGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGGT
GTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTG
TAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGT
CGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTA
ACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTAG
TAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAAT
GGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTTA
CTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAAG
GGAAGCGGGTTAAAATTCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATCC
GGGACATCAATTGGCGGTCGAGGAANAGTTATCTTTTCTTGTNNNNNNNNNN
Length of 5' end seq. 652
3' end seq. ID VHN388Z
3' end seq. 
>VHN388Z.Seq
NNNNNNNNNNACCATCCGTTGGATAANGGCTGAACGCCTTTAAGTCANAATCCATTTTAN
AAACGCAAACCAAATGCTTTANAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGNGGG
GGNCCNCTTTCAACTTTAAACCATATGATTAATNGCTGTTACNCTGCAGTTTCCTTCCGG
NTATTGTGGNGGGTGGGTAAATTTTAATTTANATCCTCGTTCCGNTCAGNTTTTNGATTG
TAGACGACTATCAAATGAACTAGGTGCTGTAAGNTTCCGAGTAGNGTTCAGTTACGAGGG
GTTGAGGNTTTTCCNTTAGTTTTTATCCATAGCCNTTATTTTTTTTTTNTATACATAATA
CATTACAATATGACACACGCATTACCAAAAGTTGTTAAATNTCAACTCGTTCAAGATATT
GGAGTTGCCCTTATTTTAGGTTCAATTGCAGGTTGTTTCTTTAAATATGGCGTTNATAAA
AAAAAGCAAAGAGAAAGAGTTGCTTTCTATAAAAATACGACAAAGAAGACTGTAAAAAAA
AAAATTAAAAATTAAATAAATATAATAANAAACAACTTT
Length of 3' end seq. 579
Connected seq. ID VHN388P
Connected seq. 
>VHN388P.Seq
ATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCTTTTTGGTAAGCAGAACTGGCGATGT
GGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGGT
GTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTG
TAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGT
CGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTA
ACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTAG
TAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAAT
GGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTTA
CTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAAG
GGAAGCGGGTTAAAATTCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATCC
GGGACATCAATTGGCGGTCGAGGAANAGTTATCTTTTCTTGT----------ACCATCCG
TTGGATAANGGCTGAACGCCTTTAAGTCANAATCCATTTTANAAACGCAAACCAAATGCT
TTANAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGNGGGGGNCCNCTTTCAACTTTA
AACCATATGATTAATNGCTGTTACNCTGCAGTTTCCTTCCGGNTATTGTGGNGGGTGGGT
AAATTTTAATTTANATCCTCGTTCCGNTCAGNTTTTNGATTGTAGACGACTATCAAATGA
ACTAGGTGCTGTAAGNTTCCGAGTAGNGTTCAGTTACGAGGGGTTGAGGNTTTTCCNTTA
GTTTTTATCCATAGCCNTTATTTTTTTTTTNTATACATAATACATTACAATATGACACAC
GCATTACCAAAAGTTGTTAAATNTCAACTCGTTCAAGATATTGGAGTTGCCCTTATTTTA
GGTTCAATTGCAGGTTGTTTCTTTAAATATGGCGTTNATAAAAAAAAGCAAAGAGAAAGA
GTTGCTTTCTATAAAAATACGACAAAGAAGACTGTAAAAAAAAAAATTAAAAATTAAATA
AATATAATAANAAACAACTTT
Length of connected seq. 1211
Full length Seq ID -
Full length Seq. -
Length of full length seq. -