AFO654
Library AF
(Link to library)
Clone ID AFO654
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15029-1
Original site URL
Representative seq. ID AFO654P
(Link to Original site)
Representative DNA sequence
>AFO654 (AFO654Q) /CSM/AF/AFO6-C/AFO654Q.Seq.d/
AGTAATAATAATAGTACAAATAATTTAAATAATAGTGCAATTTTAAATGAATCAATTGCT
CAATCAATTGAAGTTTTAATGTTGGGTGATATTTTCGTTGGTAAAACTCAAATCATTCAA
AGATTGTTAGGTAATCCATTTCAAAATGCTTATAAGGAAACCACGGAATGGAATAGAAAC
GTTTATCAAATGACGGTAAATGATGTAAGATATTTATTAAAGATTGTTGATACATGTGGT
TTGGATATTGAAGAGACATTAAATCGTGAAAGATTAGTTAGTACACAAGGTTTTATTTTC
GTTTATTCGATTGCTTCTCGTGAAAGTTTTCTAATGATTGAACAATTGCGTAAGAAACTA
TCAAGTATTAAAAGTGAGACTAAAATTCCATCGGTTTTAATCGCCAATAAGGGTGATTCA
TTAATTCGTCAAGTTACATTTGATGAAGGTAGTAAGATGGCACAACATCTTGGTAGTCAT
TATTTCGAGGTGTCTTCGATGTTCTCTGACGATGAATCCATTGGTAGACCATTCGAACAA
TTGTTGATCGATATTCAAAAGTCGGGTAATGCAAGCGGCTTTGAACCAAGCGAAATCXXX
XXXXXXXGAGAAAAAGGACGTTTGGCCATTCTCTATCATTTTAGATCCAGTTAGTAAACA
TAGTATCAATTTAATAGCCTCCACTGAGGAGGAAAGAAATGCTTGGATTAAAGCAATCAA
ATTCAATTGTTTCCTTGAAGATATAACTTCAAATATTATAGATGATGTCGTAAAAAGTAT
GGTTAGTGAAATTGCCTCTGGTGTGGCTGGCAGTGGTAGTAATAATGGTAATAATAATGG
TCATTTAAAACGTTCCGATACTACTCAACAATTAAATAATAGTGGTAGTTTTATTAATGG
TATAAATGCAAATAAACCAGTACCAAACTTTTCAAATTTATCAATTANCGGTGGTGGTAG
TAGTAACAATTCAAATAATTCAACACCAATGTNTTCACCATATGGTAGTAGTAATAATTT
CTCTTCACATTTATCACAATCAACTTCATCAATGTCAATGTCACCACAACAACAATTACA
AAGTGTATTATTATCCTCTTCAAATCTTTCATCGTCAATGAATAGTAGTTTTAGTTATTC
TTCTTCAATTTCTTCCTCTTACACTGATTCAATGTCTGGTTCTCCACCAGATTCAAANGG
TCAAGTTTTCCCTCAATCTCCACAACTAAANAAAACTTTATTCCAACGTACTACTAGTTT
TTCAAAAGGAAGCAAATTAAAATAATAAATTTAAATATTTTTAAAAAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
SNNNSTNNLNNSAILNESIAQSIEVLMLGDIFVGKTQIIQRLLGNPFQNAYKETTEWNRN
VYQMTVNDVRYLLKIVDTCGLDIEETLNRERLVSTQGFIFVYSIASRESFLMIEQLRKKL
SSIKSETKIPSVLIANKGDSLIRQVTFDEGSKMAQHLGSHYFEVSSMFSDDESIGRPFEQ
LLIDIQKSGNASGFEPSEI---

---EKKDVWPFSIILDPVSKHSINLIASTEEERNAWIKAIKFNCFLEDITSNIIDDVVKS
MVSEIASGVAGSGSNNGNNNGHLKRSDTTQQLNNSGSFINGINANKPVPNFSNLSIXGGG
SSNNSNNSTPMXSPYGSSNNFSSHLSQSTSSMSMSPQQQLQSVLLSSSNLSSSMNSSFSY
SSSISSSYTDSMSGSPPDSXGQVFPQSPQLXKTLFQRTTSFSKGSKLK**i*iflkkk


Translated Amino Acid sequence (All Frames)
Frame A:
SNNNSTNNLNNSAILNESIAQSIEVLMLGDIFVGKTQIIQRLLGNPFQNAYKETTEWNRN
VYQMTVNDVRYLLKIVDTCGLDIEETLNRERLVSTQGFIFVYSIASRESFLMIEQLRKKL
SSIKSETKIPSVLIANKGDSLIRQVTFDEGSKMAQHLGSHYFEVSSMFSDDESIGRPFEQ
LLIDIQKSGNASGFEPSEI---

---EKKDVWPFSIILDPVSKHSINLIASTEEERNAWIKAIKFNCFLEDITSNIIDDVVKS
MVSEIASGVAGSGSNNGNNNGHLKRSDTTQQLNNSGSFINGINANKPVPNFSNLSIXGGG
SSNNSNNSTPMXSPYGSSNNFSSHLSQSTSSMSMSPQQQLQSVLLSSSNLSSSMNSSFSY
SSSISSSYTDSMSGSPPDSXGQVFPQSPQLXKTLFQRTTSFSKGSKLK**i*iflkkk

Frame B:
viiivqii*iivqf*mnqllnqlkf*cwvifslvklksfkdc*vihfkmlirkprngiet
fik*r*mm*diy*rllihvvwilkrh*ivkd*lvhkvlfsfirlllvkvf**lnncvrny
qvlkvrlkfhrf*spirvih*fvklhlmkvvrwhnilvviisrclrcsltmnplvdhsnn
c*sifksrvmqaalnqak---

---rkrtfghslsf*iqlvnivsi**pplrrkemlglkqsnsivslki*lqil*mms*kv
wlvklplvwlavvvimviimvi*nvpillnn*iivvvllmv*mqinqyqtfqiyqlxvvv
vvtiqiiqhqcxhhmvvviislhiyhnqlhqcqchhnnnykvyyyplqifhrq*ivvlvi
llqflpltliqclvlhqiqxvkfslnlhn*xklysnvllvfqkean*nnkfkyf*kkk

Frame C:
****yk*fk**cnfk*incsin*sfnvg*yfrw*nsnhskivr*siskcl*gnhgme*kr
lsndgk*ckifikdc*ymwfgy*rdiks*kis*ytrfyfrlfdcfs*kfsnd*tia*eti
ky*k*d*nsigfnrq*g*finsssyi**r**dgttsw*slfrgvfdvl*r*ihw*tirti
vdryskvg*ckrl*tkrn---

---ekgrlailyhfrss**t*yqfnslh*ggkkcld*snqiqlfp*rynfkyyr*crkky
g**nclwcgwqw***w***wsfktfryystik**w*fy*wykck*tstklfkfinxrww*
**qfk*fntnvftiw****flftfitinfinvnvttttitkciiilfksfivne**f*lf
ffnffllh*fnvwfstrfkxssfpsisttkxnfiptyy*ffkrkqikiinlnifkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFO654 (AFO654Q) /CSM/AF/AFO6-C/AFO654Q.Seq.d/ 2498 0.0
VFH895 (VFH895Q) /CSM/VF/VFH8-D/VFH895Q.Seq.d/ 1263 0.0
SSH409 (SSH409Q) /CSM/SS/SSH4-A/SSH409Q.Seq.d/ 355 1e-96
CHO693 (CHO693Q) /CSM/CH/CHO6-D/CHO693Q.Seq.d/ 50 9e-05
VSI730 (VSI730Q) /CSM/VS/VSI7-B/VSI730Q.Seq.d/ 48 3e-04
VSC414 (VSC414Q) /CSM/VS/VSC4-A/VSC414Q.Seq.d/ 46 0.001
FC-BK16 (FC-BK16Q) /CSM/FC/FC-BK/FC-BK16Q.Seq.d/ 46 0.001
VSA739 (VSA739Q) /CSM/VS/VSA7-B/VSA739Q.Seq.d/ 44 0.005
VHP579 (VHP579Q) /CSM/VH/VHP5-D/VHP579Q.Seq.d/ 44 0.005
VHL616 (VHL616Q) /CSM/VH/VHL6-A/VHL616Q.Seq.d/ 44 0.005

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 44 1e-07 11
AC116979|AC116979.2 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence. 38 2e-06 10
AF362369|AF362369.2 Dictyostelium discoideum histidine kinase DhkG (dhkG) gene, complete cds. 42 2e-06 6
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 40 4e-06 12
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 38 7e-06 13
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 50 9e-06 11
AF362375|AF362375.2 Dictyostelium discoideum histidine kinase DhkE (dhkE) gene, complete cds. 32 3e-05 7
U42597|U42597.1 Dictyostelium discoideum histidine kinase A (dhkA) mRNA, complete cds. 38 4e-05 5
AJ581661|AJ581661.1 Dictyostelium discoideum partial dstB gene for Dd-STATb protein, genomic RNA. 38 5e-05 5
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence. 40 9e-05 10
dna update 2003. 9.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55CB0) RecName: Full=Ras-like protein rasU; Flags: Precursor; 94 1e-17
CR382133_421(CR382133|pid:none) Debaryomyces hansenii strain CBS... 89 4e-16
AM270393_34(AM270393|pid:none) Aspergillus niger contig An17c011... 88 6e-16
(Q55CB7) RecName: Full=Ras-like protein rasY; Flags: Precursor; 86 3e-15
(Q55CC0) RecName: Full=Ras-like protein rasW; Flags: Precursor; 85 6e-15
AF283573_1(AF283573|pid:none) Aspergillus fumigatus Ras homolog ... 85 6e-15
CP000502_42(CP000502|pid:none) Pichia stipitis CBS 6054 chromoso... 82 3e-14
FM992690_484(FM992690|pid:none) Candida dubliniensis CD36 chromo... 82 4e-14
CR382121_471(CR382121|pid:none) Kluyveromyces lactis strain NRRL... 81 7e-14
EU124620_1(EU124620|pid:none) Lutzomyia longipalpis putative Ras... 81 9e-14
protein update 2009. 4.26
PSORT

psg: 0.72 gvh: 0.41 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: extracellular, including cell wall

>> prediction for AFO654 is nuc

5' end seq. ID AFO654F
5' end seq.
>AFO654F.Seq
AGTAATAATAATAGTACAAATAATTTAAATAATAGTGCAATTTTAAATGAATCAATTGCT
CAATCAATTGAAGTTTTAATGTTGGGTGATATTTTCGTTGGTAAAACTCAAATCATTCAA
AGATTGTTAGGTAATCCATTTCAAAATGCTTATAAGGAAACCACGGAATGGAATAGAAAC
GTTTATCAAATGACGGTAAATGATGTAAGATATTTATTAAAGATTGTTGATACATGTGGT
TTGGATATTGAAGAGACATTAAATCGTGAAAGATTAGTTAGTACACAAGGTTTTATTTTC
GTTTATTCGATTGCTTCTCGTGAAAGTTTTCTAATGATTGAACAATTGCGTAAGAAACTA
TCAAGTATTAAAAGTGAGACTAAAATTCCATCGGTTTTAATCGCCAATAAGGGTGATTCA
TTAATTCGTCAAGTTACATTTGATGAAGGTAGTAAGATGGCACAACATCTTGGTAGTCAT
TATTTCGAGGTGTCTTCGATGTTCTCTGACGATGAATCCATTGGTAGACCATTCGAACAA
TTGTTGATCGATATTCAAAAGTCGGGTAATGCAAGCGGCTTTGAACCAAGCGAAATC---
-------
Length of 5' end seq. 597
3' end seq. ID AFO654Z
3' end seq.
>AFO654Z.Seq
----------GAGAAAAAGGACGTTTGGCCATTCTCTATCATTTTAGATCCAGTTAGTAA
ACATAGTATCAATTTAATAGCCTCCACTGAGGAGGAAAGAAATGCTTGGATTAAAGCAAT
CAAATTCAATTGTTTCCTTGAAGATATAACTTCAAATATTATAGATGATGTCGTAAAAAG
TATGGTTAGTGAAATTGCCTCTGGTGTGGCTGGCAGTGGTAGTAATAATGGTAATAATAA
TGGTCATTTAAAACGTTCCGATACTACTCAACAATTAAATAATAGTGGTAGTTTTATTAA
TGGTATAAATGCAAATAAACCAGTACCAAACTTTTCAAATTTATCAATTANCGGTGGTGG
TAGTAGTAACAATTCAAATAATTCAACACCAATGTNTTCACCATATGGTAGTAGTAATAA
TTTCTCTTCACATTTATCACAATCAACTTCATCAATGTCAATGTCACCACAACAACAATT
ACAAAGTGTATTATTATCCTCTTCAAATCTTTCATCGTCAATGAATAGTAGTTTTAGTTA
TTCTTCTTCAATTTCTTCCTCTTACACTGATTCAATGTCTGGTTCTCCACCAGATTCAAA
NGGTCAAGTTTTCCCTCAATCTCCACAACTAAANAAAACTTTATTCCAACGTACTACTAG
TTTTTCAAAAGGAAGCAAATTAAAATAATAAATTTAAATATTTTTAAAAAAAAAAA
Length of 3' end seq. 706
Connected seq. ID AFO654P
Connected seq.
>AFO654P.Seq
AGTAATAATAATAGTACAAATAATTTAAATAATAGTGCAATTTTAAATGAATCAATTGCT
CAATCAATTGAAGTTTTAATGTTGGGTGATATTTTCGTTGGTAAAACTCAAATCATTCAA
AGATTGTTAGGTAATCCATTTCAAAATGCTTATAAGGAAACCACGGAATGGAATAGAAAC
GTTTATCAAATGACGGTAAATGATGTAAGATATTTATTAAAGATTGTTGATACATGTGGT
TTGGATATTGAAGAGACATTAAATCGTGAAAGATTAGTTAGTACACAAGGTTTTATTTTC
GTTTATTCGATTGCTTCTCGTGAAAGTTTTCTAATGATTGAACAATTGCGTAAGAAACTA
TCAAGTATTAAAAGTGAGACTAAAATTCCATCGGTTTTAATCGCCAATAAGGGTGATTCA
TTAATTCGTCAAGTTACATTTGATGAAGGTAGTAAGATGGCACAACATCTTGGTAGTCAT
TATTTCGAGGTGTCTTCGATGTTCTCTGACGATGAATCCATTGGTAGACCATTCGAACAA
TTGTTGATCGATATTCAAAAGTCGGGTAATGCAAGCGGCTTTGAACCAAGCGAAATC---
-------GAGAAAAAGGACGTTTGGCCATTCTCTATCATTTTAGATCCAGTTAGTAAACA
TAGTATCAATTTAATAGCCTCCACTGAGGAGGAAAGAAATGCTTGGATTAAAGCAATCAA
ATTCAATTGTTTCCTTGAAGATATAACTTCAAATATTATAGATGATGTCGTAAAAAGTAT
GGTTAGTGAAATTGCCTCTGGTGTGGCTGGCAGTGGTAGTAATAATGGTAATAATAATGG
TCATTTAAAACGTTCCGATACTACTCAACAATTAAATAATAGTGGTAGTTTTATTAATGG
TATAAATGCAAATAAACCAGTACCAAACTTTTCAAATTTATCAATTANCGGTGGTGGTAG
TAGTAACAATTCAAATAATTCAACACCAATGTNTTCACCATATGGTAGTAGTAATAATTT
CTCTTCACATTTATCACAATCAACTTCATCAATGTCAATGTCACCACAACAACAATTACA
AAGTGTATTATTATCCTCTTCAAATCTTTCATCGTCAATGAATAGTAGTTTTAGTTATTC
TTCTTCAATTTCTTCCTCTTACACTGATTCAATGTCTGGTTCTCCACCAGATTCAAANGG
TCAAGTTTTCCCTCAATCTCCACAACTAAANAAAACTTTATTCCAACGTACTACTAGTTT
TTCAAAAGGAAGCAAATTAAAATAATAAATTTAAATATTTTTAAAAAAAAAAA
Length of connected seq. 1303
Full length Seq ID -
Full length Seq. -
Length of full length seq. -