NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHN326
Library VH
(Link to library)
Clone ID VHN326
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11527-1
Original site URL
Representative seq. ID VHN326P
(Link to Original site)
Representative DNA sequence 
>VHN326 (VHN326Q) /CSM/VH/VHN3-B/VHN326Q.Seq.d/
AAAGATTGCTTTGATTGGTTGTGGTCCAACCTCAATTAGTTGTGCAACATTTTTAGGTCG
TTTAGGTTACACAGATGTCACCATCTTTGAAAAGGAACAATACTTGGGTGGTCTTAGCAG
TAGTGAAATTCCAAACTATCGTCTCAATTATGAAGTGGTTGAATTTGAAATCAAGTTAAT
GAAAGATTTAGGTGTAAAAGTTGAATATGGTAAACGTTTAGGTGAGAATGGCTTCACCGT
TGAATCATTACAAAAACAAGGTTATGAAGCCATTTACTTGGGTATTGGTATGCCTGAACC
AAAGATTGATCCAGTCTTTAACGAGTTGACAAGTGATCAAGGTTTTTTCAGTAGTAAAGA
GTTCTTACCAAAAGTTAGCAAAGCCTCAAAGGCTGGTATGTGCGGTTGTAAATCACAATT
ACCACAACTCAATGGTAGAGTTATTGTATTGGGTGCTGGTGATACCGCTTTCGATTGTGC
TACCTCTGCTTTCCGTTGCGGTGCATCACGTGTTACCGTTTGTTTCCGTCGTGGTTTCTC
TGATATGAGAGCCGTTCCTGAAGAAGTTGACATTGCCAANGATGAACGTTGTGAGTTCCT
TCCATACGTTTTACXXXXXXXXXXTTTCAGGTAATGCTACTCGTCCAATTGCTTTACGTG
CAGTTTCTTCCATTAGAAAATCTTTACCAGATTATCCAATTATGGCAACTGGTGGTGCTG
ATTCTGCTGATGCCACTATTCAATTCCTCCATTGTGGTGCTTCAGTAGTTCAAATTTGTT
CATCCGTTCAAAATCAAGATTTCACCGTCGTTCAAGATTATATCACTGGTCTTAAGACTT
ATCTTTACATGCAATCTCGTGAAGATTTATTGCAATGGGATGGTCAATCACCACCAAATG
AAATCATAAACAAAAATCCAAAATTAAAAGGTTTACCAAAATTCGGTAAATATCTTTTAG
AACGTAATAGAATCGATACTGAAGAGAAACAAAACATTGATTTACAAAAAGTTAAGAATC
CATTAGTACCATCACCAAATCCAACTCATCCAGTTCCATCTCTCAAAGATCAAATTAATC
GTGCAATCCCAAGAATTGGTCGTCATGATGATCTTAAACGTGATCAACAAGTAGTTGCTC
TTATCGATGAAGATAAATGTATCAATTGTGGTAAATGTTATATGACTTGTAATGATTCTG
GTTATCAAGCTATTAAATTCGATGGTAAAACTCATATTCCATTAGTCACTGATTTATGTA
CTGGTTGTNATTTATGTTTATCAGTTTGTCCAGTACCAGATTGCATTACAAGGTACCACG
GAAACAATTTNGTACCAGATAGAGGTTAACGTCCAAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
KIALIGCGPTSISCATFLGRLGYTDVTIFEKEQYLGGLSSSEIPNYRLNYEVVEFEIKLM
KDLGVKVEYGKRLGENGFTVESLQKQGYEAIYLGIGMPEPKIDPVFNELTSDQGFFSSKE
FLPKVSKASKAGMCGCKSQLPQLNGRVIVLGAGDTAFDCATSAFRCGASRVTVCFRRGFS
DMRAVPEEVDIAXDERCEFLPYVL---

---SGNATRPIALRAVSSIRKSLPDYPIMATGGADSADATIQFLHCGASVVQICSSVQNQ
DFTVVQDYITGLKTYLYMQSREDLLQWDGQSPPNEIINKNPKLKGLPKFGKYLLERNRID
TEEKQNIDLQKVKNPLVPSPNPTHPVPSLKDQINRAIPRIGRHDDLKRDQQVVALIDEDK
CINCGKCYMTCNDSGYQAIKFDGKTHIPLVTDLCTGCXLCLSVCPVPDCITRYHGNNXVP
DRG*rpk
Translated Amino Acid sequence (All Frames) 
Frame A:
kdcfdwlwsnln*lcnifrsfrlhrchhl*kgtilgws*q**nsklssql*sg*i*nqvn
erfrcks*iw*tfr*ewlhr*iitktrl*shllgywya*tkd*ssl*rvdk*srffq**r
vltks*qslkgwyvrl*ititttqw*sycigcw*yrfrlcylcfplrcitcyrlfpswfl
*yesrs*rs*hcqx*tl*vpsirf---

---fqvmllvqllyvqflplenlyqiiqlwqlvvlillmplfnssivvlq*fkfvhpfki
kispsfkiislvlrliftcnlvkiycngmvnhhqmks*tkiqn*kvyqnsvnif*nvies
ilkrnktliykklrih*yhhqiqliqfhlskiklivqsqelvvmmilnvink*lllsmki
nvsivvnvi*lvmilvikllnsmvklifh*sliyvlvviyvyqfvqyqialqgttetixy
qievnvqn

Frame B:
KIALIGCGPTSISCATFLGRLGYTDVTIFEKEQYLGGLSSSEIPNYRLNYEVVEFEIKLM
KDLGVKVEYGKRLGENGFTVESLQKQGYEAIYLGIGMPEPKIDPVFNELTSDQGFFSSKE
FLPKVSKASKAGMCGCKSQLPQLNGRVIVLGAGDTAFDCATSAFRCGASRVTVCFRRGFS
DMRAVPEEVDIAXDERCEFLPYVL---

---fr*cyssncftcsffh*kiftrlsnygnwwc*fc*chysipplwcfsssnlfirsks
rfhrrsrlyhws*dlslhais*rfiamgwsittk*nhkqkskikrftkir*isfrt**nr
y*retkh*ftks*esistitksnssssisqrsn*scnpknwss**s*t*stsscsyr*r*
myqlw*mlydl**fwlssy*irw*nsysish*fmywlxfmfislsstrlhykvprkqfxt
r*rltsk

Frame C:
rll*lvvvqpqlvvqhf*vv*vtqmspslkrnntwvvlavvkfqtivsimkwlnlkss**
ki*v*klnmvnv*vrmasplnhyknkvmkpftwvlvclnqrliqslts*qvikvfsvvks
syqklakpqrlvcavvnhnyhnsmvellywvlviplsivlpllsvavhhvlpfvsvvvsl
i*epflkkltlpxmnvvssfhtfy---

---SGNATRPIALRAVSSIRKSLPDYPIMATGGADSADATIQFLHCGASVVQICSSVQNQ
DFTVVQDYITGLKTYLYMQSREDLLQWDGQSPPNEIINKNPKLKGLPKFGKYLLERNRID
TEEKQNIDLQKVKNPLVPSPNPTHPVPSLKDQINRAIPRIGRHDDLKRDQQVVALIDEDK
CINCGKCYMTCNDSGYQAIKFDGKTHIPLVTDLCTGCXLCLSVCPVPDCITRYHGNNXVP
DRG*rpk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHN326 (VHN326Q) /CSM/VH/VHN3-B/VHN326Q.Seq.d/                       2617   0.0
VHB361 (VHB361Q) /CSM/VH/VHB3-C/VHB361Q.Seq.d/                       1388   0.0
VFI747 (VFI747Q) /CSM/VF/VFI7-B/VFI747Q.Seq.d/                       1384   0.0
VHO413 (VHO413Q) /CSM/VH/VHO4-A/VHO413Q.Seq.d/                       1380   0.0
VHI412 (VHI412Q) /CSM/VH/VHI4-A/VHI412Q.Seq.d/                       1380   0.0
SHJ895 (SHJ895Q) /CSM/SH/SHJ8-D/SHJ895Q.Seq.d/                       1380   0.0
SHD358 (SHD358Q) /CSM/SH/SHD3-C/SHD358Q.Seq.d/                       1380   0.0
VHB368 (VHB368Q) /CSM/VH/VHB3-C/VHB368Q.Seq.d/                       1374   0.0
CHL263 (CHL263Q) /CSM/CH/CHL2-C/CHL263Q.Seq.d/                       1374   0.0
SHG712 (SHG712Q) /CSM/SH/SHG7-A/SHG712Q.Seq.d/                       1372   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ444727) Dictyostelium discoideum cDNA clone:ddv57d07, 3' ...  1445   0.0    1
(BJ437236) Dictyostelium discoideum cDNA clone:ddv33j15, 3' ...  1388   0.0    1
(AF545064) Dictyostelium discoideum dihydropyrimidine dehydr...  1356   0.0    2
(BJ445320) Dictyostelium discoideum cDNA clone:ddv59j04, 3' ...  1356   0.0    2
(BJ441559) Dictyostelium discoideum cDNA clone:ddv47h04, 3' ...  1356   0.0    2
(BJ441294) Dictyostelium discoideum cDNA clone:ddv46d07, 3' ...  1356   0.0    1
(BJ437226) Dictyostelium discoideum cDNA clone:ddv33h17, 3' ...  1356   0.0    2
(BJ432350) Dictyostelium discoideum cDNA clone:ddv18n11, 3' ...  1356   0.0    2
(BJ407876) Dictyostelium discoideum cDNA clone:dds43n24, 3' ...  1356   0.0    2
(BJ405441) Dictyostelium discoideum cDNA clone:dds31n14, 3' ...  1356   0.0    1
dna update 2008.12. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55FT1) RecName: Full=Dihydropyrimidine dehydrogenase [NADP+]; ...   476   e-132
BC080003_1(BC080003|pid:none) Xenopus laevis MGC81821 protein, m...   291   3e-77
EU850439_1(EU850439|pid:none) Adineta vaga dihydrogenpyrimidine ...   290   6e-77
EU652316_1(EU652316|pid:none) Adineta vaga dihydrogenpyrimidine ...   290   8e-77
(Q12882) RecName: Full=Dihydropyrimidine dehydrogenase [NADP+]; ...   280   9e-74
A54718(A54718) dihydropyrimidine dehydrogenase (NADP) (EC 1.3.1....   280   9e-74
(Q5R895) RecName: Full=Dihydropyrimidine dehydrogenase [NADP+]; ...   280   9e-74
AK291217_1(AK291217|pid:none) Homo sapiens cDNA FLJ76825 complet...   280   9e-74
BC131778_1(BC131778|pid:none) Homo sapiens dihydropyrimidine deh...   280   9e-74
AL356457_2(AL356457|pid:none) Human DNA sequence from clone RP11...   280   9e-74
protein update 2009. 7.18
PSORT 

 psg: 0.92  gvh: 0.53  alm: 0.35  top: 0.33  tms: 0.00  mit: 0.29  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: extracellular, including cell wall
	  8.0 %: vacuolar
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHN326 is cyt
5' end seq. ID VHN326F
5' end seq. 
>VHN326F.Seq
AAAGATTGCTTTGATTGGTTGTGGTCCAACCTCAATTAGTTGTGCAACATTTTTAGGTCG
TTTAGGTTACACAGATGTCACCATCTTTGAAAAGGAACAATACTTGGGTGGTCTTAGCAG
TAGTGAAATTCCAAACTATCGTCTCAATTATGAAGTGGTTGAATTTGAAATCAAGTTAAT
GAAAGATTTAGGTGTAAAAGTTGAATATGGTAAACGTTTAGGTGAGAATGGCTTCACCGT
TGAATCATTACAAAAACAAGGTTATGAAGCCATTTACTTGGGTATTGGTATGCCTGAACC
AAAGATTGATCCAGTCTTTAACGAGTTGACAAGTGATCAAGGTTTTTTCAGTAGTAAAGA
GTTCTTACCAAAAGTTAGCAAAGCCTCAAAGGCTGGTATGTGCGGTTGTAAATCACAATT
ACCACAACTCAATGGTAGAGTTATTGTATTGGGTGCTGGTGATACCGCTTTCGATTGTGC
TACCTCTGCTTTCCGTTGCGGTGCATCACGTGTTACCGTTTGTTTCCGTCGTGGTTTCTC
TGATATGAGAGCCGTTCCTGAAGAAGTTGACATTGCCAANGATGAACGTTGTGAGTTCCT
TCCATACGTTTTACNNNNNNNNNN
Length of 5' end seq. 624
3' end seq. ID VHN326Z
3' end seq. 
>VHN326Z.Seq
NNNNNNNNNNTTTCAGGTAATGCTACTCGTCCAATTGCTTTACGTGCAGTTTCTTCCATT
AGAAAATCTTTACCAGATTATCCAATTATGGCAACTGGTGGTGCTGATTCTGCTGATGCC
ACTATTCAATTCCTCCATTGTGGTGCTTCAGTAGTTCAAATTTGTTCATCCGTTCAAAAT
CAAGATTTCACCGTCGTTCAAGATTATATCACTGGTCTTAAGACTTATCTTTACATGCAA
TCTCGTGAAGATTTATTGCAATGGGATGGTCAATCACCACCAAATGAAATCATAAACAAA
AATCCAAAATTAAAAGGTTTACCAAAATTCGGTAAATATCTTTTAGAACGTAATAGAATC
GATACTGAAGAGAAACAAAACATTGATTTACAAAAAGTTAAGAATCCATTAGTACCATCA
CCAAATCCAACTCATCCAGTTCCATCTCTCAAAGATCAAATTAATCGTGCAATCCCAAGA
ATTGGTCGTCATGATGATCTTAAACGTGATCAACAAGTAGTTGCTCTTATCGATGAAGAT
AAATGTATCAATTGTGGTAAATGTTATATGACTTGTAATGATTCTGGTTATCAAGCTATT
AAATTCGATGGTAAAACTCATATTCCATTAGTCACTGATTTATGTACTGGTTGTNATTTA
TGTTTATCAGTTTGTCCAGTACCAGATTGCATTACAAGGTACCACGGAAACAATTTNGTA
CCAGATAGAGGTTAACGTCCAAAAT
Length of 3' end seq. 745
Connected seq. ID VHN326P
Connected seq. 
>VHN326P.Seq
AAAGATTGCTTTGATTGGTTGTGGTCCAACCTCAATTAGTTGTGCAACATTTTTAGGTCG
TTTAGGTTACACAGATGTCACCATCTTTGAAAAGGAACAATACTTGGGTGGTCTTAGCAG
TAGTGAAATTCCAAACTATCGTCTCAATTATGAAGTGGTTGAATTTGAAATCAAGTTAAT
GAAAGATTTAGGTGTAAAAGTTGAATATGGTAAACGTTTAGGTGAGAATGGCTTCACCGT
TGAATCATTACAAAAACAAGGTTATGAAGCCATTTACTTGGGTATTGGTATGCCTGAACC
AAAGATTGATCCAGTCTTTAACGAGTTGACAAGTGATCAAGGTTTTTTCAGTAGTAAAGA
GTTCTTACCAAAAGTTAGCAAAGCCTCAAAGGCTGGTATGTGCGGTTGTAAATCACAATT
ACCACAACTCAATGGTAGAGTTATTGTATTGGGTGCTGGTGATACCGCTTTCGATTGTGC
TACCTCTGCTTTCCGTTGCGGTGCATCACGTGTTACCGTTTGTTTCCGTCGTGGTTTCTC
TGATATGAGAGCCGTTCCTGAAGAAGTTGACATTGCCAANGATGAACGTTGTGAGTTCCT
TCCATACGTTTTAC----------TTTCAGGTAATGCTACTCGTCCAATTGCTTTACGTG
CAGTTTCTTCCATTAGAAAATCTTTACCAGATTATCCAATTATGGCAACTGGTGGTGCTG
ATTCTGCTGATGCCACTATTCAATTCCTCCATTGTGGTGCTTCAGTAGTTCAAATTTGTT
CATCCGTTCAAAATCAAGATTTCACCGTCGTTCAAGATTATATCACTGGTCTTAAGACTT
ATCTTTACATGCAATCTCGTGAAGATTTATTGCAATGGGATGGTCAATCACCACCAAATG
AAATCATAAACAAAAATCCAAAATTAAAAGGTTTACCAAAATTCGGTAAATATCTTTTAG
AACGTAATAGAATCGATACTGAAGAGAAACAAAACATTGATTTACAAAAAGTTAAGAATC
CATTAGTACCATCACCAAATCCAACTCATCCAGTTCCATCTCTCAAAGATCAAATTAATC
GTGCAATCCCAAGAATTGGTCGTCATGATGATCTTAAACGTGATCAACAAGTAGTTGCTC
TTATCGATGAAGATAAATGTATCAATTGTGGTAAATGTTATATGACTTGTAATGATTCTG
GTTATCAAGCTATTAAATTCGATGGTAAAACTCATATTCCATTAGTCACTGATTTATGTA
CTGGTTGTNATTTATGTTTATCAGTTTGTCCAGTACCAGATTGCATTACAAGGTACCACG
GAAACAATTTNGTACCAGATAGAGGTTAACGTCCAAAAT
Length of connected seq. 1349
Full length Seq ID -
Full length Seq. -
Length of full length seq. -