VHN244
Library VH
(Link to library)
Clone ID VHN244
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16441-1
Original site URL
Representative seq. ID VHN244P
(Link to Original site)
Representative DNA sequence
>VHN244 (VHN244Q) /CSM/VH/VHN2-B/VHN244Q.Seq.d/
ACTTCTGTTTATATAAACAATTGGAGGAAATATAAAATGAAGATTTCATCTATTTTATTT
ATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAATACTATTCCAACTTATAAG
CAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACAAATAAAGATGATTATGTA
TTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCAACAAATGGTGGTATTGAT
TGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTATGGTAATGCAGGATATTAT
CAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTATGGAAAAACCCAAATTTCA
GTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTTTTTCCACATAAAGTTGTA
TCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCACGTTCCGATAATTTCATT
TTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCATCCAATGGTGATGTTTTA
TTCACACCAGGTGGTTCAAGCTTTCCAACCGACCCATTATGGGATCCATCAGAGAAATCT
GCAGTGTTTTTCGCAATTTTAGCATCAAAXXXXXXXXXXGAGGATGAATATGATATCGGT
CAAATGATTGGTGTTGATTTAACAAATGTATTGCCATCTCCTTGCGATGATTCCTCAATG
CAATCTTATACCACTCGTTGTATTTTAGGTGAAAAAACAACTTATAGAACTGTTAAACCA
AATACCAATTGTTATATGACCCAACAAGCACAAATTTCAAATAAATATTGTGAATGTACA
GTCGAAGATTTTGAATGTGATATTGGTTACGAAAGTGCAGACGATAGCAGTTCCGATAAT
GATGGTTCTACCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTGTCGTAAATCA
ATTGCTTCACAATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCAAACCTATATC
AAATCAAAAGGTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGTTAATGCAACT
TATTCACCAGAGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGG
ATCGCTGGTGTTGTTATTGCTATTCTTGCTTTAGCTGGTCTTGGTGGTTTTGGTTTCTAC
GTTTTTAAGAATCCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTCAAAGGTC
GGTCCAAAATATAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGANAATTGGTAT
GAAGAGATATGCTCAAATTTTAAANATAANATTACAAGATAACGAAGATTTTAAAAAAAA
AT
sequence update 2002.10.25
Translated Amino Acid sequence
TSVYINNWRKYKMKISSILFIFIAIIVGLALSQNTIPTYKQNSINWKQFQPLYTNKDDYV
LIVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIMVVNFPSYGKTQIS
VSNDAGQTFSTSAVFPHKVVSVSPHLDIEGLVIARSDNFILISEDFGLTWNNASSNGDVL
FTPGGSSFPTDPLWDPSEKSAVFFAILAS---

---EDEYDIGQMIGVDLTNVLPSPCDDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQQA
QISNKYCECTVEDFECDIGYESADDSSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPITE
ENCTPGQTYIKSKGFRRVAATQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILA
LAGLGGFGFYVFKNPDFKQKLLKMVGFSKVGPKYSVIGIKPNSLADXNWYEEICSNFKXX
ITR*rrf*kk


Translated Amino Acid sequence (All Frames)
Frame A:
TSVYINNWRKYKMKISSILFIFIAIIVGLALSQNTIPTYKQNSINWKQFQPLYTNKDDYV
LIVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIMVVNFPSYGKTQIS
VSNDAGQTFSTSAVFPHKVVSVSPHLDIEGLVIARSDNFILISEDFGLTWNNASSNGDVL
FTPGGSSFPTDPLWDPSEKSAVFFAILAS---

---EDEYDIGQMIGVDLTNVLPSPCDDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQQA
QISNKYCECTVEDFECDIGYESADDSSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPITE
ENCTPGQTYIKSKGFRRVAATQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILA
LAGLGGFGFYVFKNPDFKQKLLKMVGFSKVGPKYSVIGIKPNSLADXNWYEEICSNFKXX
ITR*rrf*kk

Frame B:
llfi*tiggnik*rfhlfylfl*rllla*hfhkilfqlisktaligsnfnhyiqikmimy
*l*iqdqrmf*kdqqmvvlighqmylinkeilfmvmqdiikemiilwl*ishlmekpkfq
yqmmqvkhfqpqqffhiklyqfhhi*ilrv**lhvpiisf*lvkilv*hgtmhhpmvmfy
shqvvqafqpthygihqrnlqcfsqf*hq---

---rmnmisvk*lvli*qmychllamipqcnliplvvf*vkkqliellnqipivi*pnkh
kfqinivnvqskilnvilvtkvqtiavpimmvlplvfhldlqnn*ivvnqllhnmfqslk
kivhqvkpisnqkvseeslphnv*vvlmqlihqrlscvhqkilqvvakvgslvllllfll
*lvlvvlvstflriqisnkny*kwlvfqrsvqnivlsvlnqth*lmxigmkryaqilxix
lqdnedfkkk

Frame C:
fclykqleei*nedfiyfiyfysdycwlstftkyysnl*akqh*leaistiiyk*r*lci
ncrykikecfkkinkwwy*lvikct**trkyylw*crilskr**yygckfpilwknpnfs
ik*crsnifnlssfst*scisfttfry*gfsdctfr*fhfn**rfwfnmeqciiqw*cfi
htrwfklsnrpimgsireicsvfrnfsik---

---g*i*yrsndwc*fnkciaislr*flnailyhslyfr*knnl*nc*tkyqllydptst
nfk*il*mysrrf*m*ywlrkcrr*qfr**wfylwysiwifrtiels*incfticsnh*r
klytrsnlyqikrfqksrchtmcrwc*cnlftrdchvsikkffkwwqrldrwccycyscf
swswwfwflrf*esrfqtkiikngwffkgrski*cyry*tklis**xlv*rdmlkf*x*x
ykitkilkkn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHN244 (VHN244Q) /CSM/VH/VHN2-B/VHN244Q.Seq.d/ 2642 0.0
VHP169 (VHP169Q) /CSM/VH/VHP1-C/VHP169Q.Seq.d/ 1394 0.0
VHM370 (VHM370Q) /CSM/VH/VHM3-C/VHM370Q.Seq.d/ 1382 0.0
VHB121 (VHB121Q) /CSM/VH/VHB1-A/VHB121Q.Seq.d/ 1380 0.0
VHI749 (VHI749Q) /CSM/VH/VHI7-C/VHI749Q.Seq.d/ 1376 0.0
VHE218 (VHE218Q) /CSM/VH/VHE2-A/VHE218Q.Seq.d/ 1376 0.0
VHK617 (VHK617Q) /CSM/VH/VHK6-A/VHK617Q.Seq.d/ 1374 0.0
VHB530 (VHB530Q) /CSM/VH/VHB5-B/VHB530Q.Seq.d/ 1368 0.0
CHG148 (CHG148Q) /CSM/CH/CHG1-B/CHG148Q.Seq.d/ 1368 0.0
VHP606 (VHP606Q) /CSM/VH/VHP6-A/VHP606Q.Seq.d/ 1366 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ444745) Dictyostelium discoideum cDNA clone:ddv57g12, 3' ... 1433 0.0 1
(BJ446450) Dictyostelium discoideum cDNA clone:ddv62c22, 3' ... 1346 0.0 1
(BJ446087) Dictyostelium discoideum cDNA clone:ddv61i17, 3' ... 1346 0.0 2
(BJ438962) Dictyostelium discoideum cDNA clone:ddv39c06, 3' ... 1346 0.0 3
(BJ438831) Dictyostelium discoideum cDNA clone:ddv38i18, 3' ... 1346 0.0 2
(BJ442315) Dictyostelium discoideum cDNA clone:ddv49b16, 3' ... 1338 0.0 2
(BJ446129) Dictyostelium discoideum cDNA clone:ddv61b21, 3' ... 1332 0.0 1
(BJ442936) Dictyostelium discoideum cDNA clone:ddv51k12, 3' ... 1332 0.0 1
(BJ436406) Dictyostelium discoideum cDNA clone:ddv31g02, 3' ... 1332 0.0 2
(BJ441717) Dictyostelium discoideum cDNA clone:ddv47j16, 3' ... 1330 0.0 2
dna update 2008.12. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF159157_1(AF159157|pid:none) Hydra vulgaris head-activator bind... 80 2e-13
AB093294_1(AB093294|pid:none) Mus musculus mRNA for mKIAA1329 pr... 80 2e-13
(Q9EPR5) RecName: Full=VPS10 domain-containing receptor SorCS2; ... 80 2e-13
BC156053_1(BC156053|pid:none) Synthetic construct Homo sapiens c... 79 5e-13
(Q95209) RecName: Full=Sortilin-related receptor; AltName: Full=... 78 9e-13
AB037750_1(AB037750|pid:none) Homo sapiens mRNA for KIAA1329 pro... 78 9e-13
AF284755_1(AF284755|pid:none) Mus musculus VPS10 domain receptor... 76 3e-12
(Q9JLC4) RecName: Full=VPS10 domain-containing receptor SorCS1; ... 76 3e-12
AY099453_1(AY099453|pid:none) Homo sapiens VPS10 domain receptor... 74 2e-11
AB209142_1(AB209142|pid:none) Homo sapiens mRNA for VPS10 domain... 74 2e-11
protein update 2009. 7.18
PSORT

psg: 0.68 gvh: 0.69 alm: 0.15 top: 0.33 tms: 0.13 mit: 0.39 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: mitochondrial
32.0 %: endoplasmic reticulum
8.0 %: extracellular, including cell wall
8.0 %: plasma membrane
4.0 %: vacuolar
4.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: nuclear
4.0 %: peroxisomal

>> prediction for VHN244 is mit

5' end seq. ID VHN244F
5' end seq.
>VHN244F.Seq
ACTTCTGTTTATATAAACAATTGGAGGAAATATAAAATGAAGATTTCATCTATTTTATTT
ATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAATACTATTCCAACTTATAAG
CAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACAAATAAAGATGATTATGTA
TTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCAACAAATGGTGGTATTGAT
TGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTATGGTAATGCAGGATATTAT
CAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTATGGAAAAACCCAAATTTCA
GTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTTTTTCCACATAAAGTTGTA
TCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCACGTTCCGATAATTTCATT
TTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCATCCAATGGTGATGTTTTA
TTCACACCAGGTGGTTCAAGCTTTCCAACCGACCCATTATGGGATCCATCAGAGAAATCT
GCAGTGTTTTTCGCAATTTTAGCATCAAANNNNNNNNNN
Length of 5' end seq. 639
3' end seq. ID VHN244Z
3' end seq.
>VHN244Z.Seq
NNNNNNNNNNGAGGATGAATATGATATCGGTCAAATGATTGGTGTTGATTTAACAAATGT
ATTGCCATCTCCTTGCGATGATTCCTCAATGCAATCTTATACCACTCGTTGTATTTTAGG
TGAAAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGTTATATGACCCAACAAGC
ACAAATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTA
CGAAAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGG
ATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCACAATATGTTCCAATCACTGA
AGAAAATTGTACACCAGGTCAAACCTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGC
CACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATTGTCATGTGTCCATC
AAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGC
TTTAGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAGAATCCAGATTTCAAACAAAA
ATTATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATTAA
ACCAAACTCATTAGCTGATGANAATTGGTATGAAGAGATATGCTCAAATTTTAAANATAA
NATTACAAGATAACGAAGATTTTAAAAAAAAAT
Length of 3' end seq. 753
Connected seq. ID VHN244P
Connected seq.
>VHN244P.Seq
ACTTCTGTTTATATAAACAATTGGAGGAAATATAAAATGAAGATTTCATCTATTTTATTT
ATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAATACTATTCCAACTTATAAG
CAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACAAATAAAGATGATTATGTA
TTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCAACAAATGGTGGTATTGAT
TGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTATGGTAATGCAGGATATTAT
CAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTATGGAAAAACCCAAATTTCA
GTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTTTTTCCACATAAAGTTGTA
TCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCACGTTCCGATAATTTCATT
TTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCATCCAATGGTGATGTTTTA
TTCACACCAGGTGGTTCAAGCTTTCCAACCGACCCATTATGGGATCCATCAGAGAAATCT
GCAGTGTTTTTCGCAATTTTAGCATCAAA----------GAGGATGAATATGATATCGGT
CAAATGATTGGTGTTGATTTAACAAATGTATTGCCATCTCCTTGCGATGATTCCTCAATG
CAATCTTATACCACTCGTTGTATTTTAGGTGAAAAAACAACTTATAGAACTGTTAAACCA
AATACCAATTGTTATATGACCCAACAAGCACAAATTTCAAATAAATATTGTGAATGTACA
GTCGAAGATTTTGAATGTGATATTGGTTACGAAAGTGCAGACGATAGCAGTTCCGATAAT
GATGGTTCTACCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTGTCGTAAATCA
ATTGCTTCACAATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCAAACCTATATC
AAATCAAAAGGTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGTTAATGCAACT
TATTCACCAGAGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGG
ATCGCTGGTGTTGTTATTGCTATTCTTGCTTTAGCTGGTCTTGGTGGTTTTGGTTTCTAC
GTTTTTAAGAATCCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTCAAAGGTC
GGTCCAAAATATAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGANAATTGGTAT
GAAGAGATATGCTCAAATTTTAAANATAANATTACAAGATAACGAAGATTTTAAAAAAAA
AT
Length of connected seq. 1372
Full length Seq ID -
Full length Seq. -
Length of full length seq. -