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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHN241
Library VH
(Link to library)
Clone ID VHN241
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15754-1
Original site URL
Representative seq. ID VHN241P
(Link to Original site)
Representative DNA sequence 
>VHN241 (VHN241Q) /CSM/VH/VHN2-B/VHN241Q.Seq.d/
TAATGGAACAAAAAAGATTAGATGATTCATTATTAAGAAATTCTGATTGGAAGAATTGGG
GTACCTATGTAAGTGATAGACAATGGGCAACTGTTCGTGAAGATTATGGTGGTGAACCAT
GGACCTACTTTCCACACGATCATGCTAGATCACGTGCATATAGATGGTCAGAGGATAGTA
TTGGTGGATTTTGTAATAGATTTCAAAATATTTGTTTAGGTTTAGCATTTTGGAATGAAA
AAGATCCAATTATTAAAGAGAGATTTTTTGGACTTGGTGGACCAGAAGGAAATCATGGTG
AAGATGTAAAAGAACATTATTTCTATTTAGATAATACACCAACACATTCCTATGCCAAAA
TGTTATATAAATATCCAATGAATGAATATCCATATAGTGATTTAGTATCAACCAATGCAC
AACGTGGTAAACAAGATCCAGAGTATGAAATTGAAGATACTGGTATCTTTGATAAGGATG
AATATTTCGATTGTTACATTGAATATGCTAAAGGAGATCAAGAAGATGATATTTTATGTA
AAGTTACCGTACATAATCGTTCAACCCGATAGAGAAGCAACCATTCATGTACTTCCACAT
CTTTGGTATCGTAATACTTGGTCATGXXXXXXXXXXTTTGATTCAATCATTTCACCAGGT
TCTCATCAACATCAACTCAAAGTCTATTCATTCGTTGGTTTAATACCATTGTTTGCTGCT
GAAATTTTGGATTATGATACACTTCAAGCTTTACCAAAATTCAAAGAACGTTTGGATTGG
TTCGTAAAGTATAGACCAAATTTAGTGAAAAACATTGCTCCATTCACTGCTTTGGGTCAA
AATAAATCACGTTTACTCTCAATTGTAAATCGTGAGAAATTGGAATTAATCTTAAAGAAA
ATGTTGGATGAAGATTGGTTCCTCTCTGAAAATGGTATTAGATCATTATCAAAACATCAC
AAGGATCATCCATTCACTTTTGCTGAGATGGATGCTTGTGTTGGTTATGTACCTGGCGAG
AGTGATGTTCATATCATGGGTTCAAATAGTAATTGGAGAGGTCCAGTTTGGTTTGCCGTA
AATTATCTCATGATTCAATCACTTCGTACCTATCATGAATACTATGGTGATGAATTCCAA
ATTGAATATCCAACAAACTCNTGGTAACCTCGTAACTTTGGATATCGTAGCCGATGATAT
CTCTAAACGTCTCATTAGTATCTTCCAAGAGAATCAAGATGGTACTAGAAAATTTGCTGG
TGGTAAACCAATTTTCGCAAAAAAACATGGAAAGATCATATATTGTTCAATGAATATTTC
CATGGTGATAGTGGTGCGGTCTGGGCTTCTCACCAGAC
sequence update 2002.10.25
Translated Amino Acid sequence 
*wnkkd*mihy*eiligrigvpm*vidngqlfvkimvvnhgptfhtimldhvhidgqriv
lvdfvidfkifv*v*hfgmkkiqllkrdfldlvdqkeimvkm*kniisi*iihqhipmpk
cyiniq*mnihivi*YQPMHNVVNKIQSMKLKILVSLIRMNISIVTLNMLKEIKKMIFYV
KLPYIIVQPDREATIHVLPHLWYRNTWS---

---FDSIISPGSHQHQLKVYSFVGLIPLFAAEILDYDTLQALPKFKERLDWFVKYRPNLV
KNIAPFTALGQNKSRLLSIVNREKLELILKKMLDEDWFLSENGIRSLSKHHKDHPFTFAE
MDACVGYVPGESDVHIMGSNSNWRGPVWFAVNYLMIQSLRTYHEYYGDEFQIEYPTNSW*
prnfgyrsr*yl*tsh*ylpresrwy*kicww*tnfrkktwkdhilfneyfhgdsgavwa
shq
Translated Amino Acid sequence (All Frames) 
Frame A:
*wnkkd*mihy*eiligrigvpm*vidngqlfvkimvvnhgptfhtimldhvhidgqriv
lvdfvidfkifv*v*hfgmkkiqllkrdfldlvdqkeimvkm*kniisi*iihqhipmpk
cyiniq*mnihivi*YQPMHNVVNKIQSMKLKILVSLIRMNISIVTLNMLKEIKKMIFYV
KLPYIIVQPDREATIHVLPHLWYRNTWS---

---FDSIISPGSHQHQLKVYSFVGLIPLFAAEILDYDTLQALPKFKERLDWFVKYRPNLV
KNIAPFTALGQNKSRLLSIVNREKLELILKKMLDEDWFLSENGIRSLSKHHKDHPFTFAE
MDACVGYVPGESDVHIMGSNSNWRGPVWFAVNYLMIQSLRTYHEYYGDEFQIEYPTNSW*
prnfgyrsr*yl*tsh*ylpresrwy*kicww*tnfrkktwkdhilfneyfhgdsgavwa
shq

Frame B:
ngtkkir*fiikkf*leelgylck**tmgncs*rlww*tmdllstrsc*itci*mvrg*y
wwil**iskylfrfsile*krsny*reifwtwwtrrksw*rckrtlflfr*ytntflcqn
vi*isne*isi**fsinqcttw*trsrv*n*rywyl**g*ifrllh*ic*rrsrr*yfm*
syrt*sfnpiekqpfmyfhifgivilgh---

---liqsfhqvlininsksihslv*yhclllkfwimihfklyqnsknvwigs*sidqi**
ktllhsllwvkinhvysql*ivrnwn*s*rkcwmkigsslkmvldhyqnitriihslllr
wmlvlvmylarvmfiswvqivigevqfglp*iis*fnhfvpimntmvmnsklniqqtxgn
lvtldivaddiskrlisifqenqdgtrkfaggkpifakkhgkiiycsmnismvivvrsgl
ltr

Frame C:
meqkrlddsllrnsdwknwgtyvsdrqwatvredyggepwtyfphdharsrayrwsedsi
ggfcnrfqniclglafwnekdpiikerffglggpegnhgedvkehyfyldntpthsyakm
lykypmneypysdlvstnaqrgkqdpeyeiedtgifdkdeyfdcyieyakgdqeddilck
vtvhnrstr*rsnhsctstslvs*ylvm---

---*fnhftrfsststqslfirwfntivcc*nfgl*ytssftkiqrtfglvrkv*tkfse
khcsihcfgsk*itftlncks*eiginlkenvg*rlvpl*kwy*iiiktsqgssihfc*d
gclcwlctwre*csyhgfk**lersslvcrklshdsitsyls*ilw**ipn*isnklxvt
s*lwis*pmislnvslvsskrikmvlenllvvnqfsqknmersyivq*ifpw**wcglgf
spd
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHN241 (VHN241Q) /CSM/VH/VHN2-B/VHN241Q.Seq.d/                       2585   0.0
VHM739 (VHM739Q) /CSM/VH/VHM7-B/VHM739Q.Seq.d/                       1354   0.0
VHM565 (VHM565Q) /CSM/VH/VHM5-C/VHM565Q.Seq.d/                       1344   0.0
VHN728 (VHN728Q) /CSM/VH/VHN7-B/VHN728Q.Seq.d/                       1334   0.0
VHK170 (VHK170Q) /CSM/VH/VHK1-C/VHK170Q.Seq.d/                       1334   0.0
VHA832 (VHA832Q) /CSM/VH/VHA8-B/VHA832Q.Seq.d/                       1334   0.0
VHA821 (VHA821Q) /CSM/VH/VHA8-A/VHA821Q.Seq.d/                       1328   0.0
VHB680 (VHB680Q) /CSM/VH/VHB6-D/VHB680Q.Seq.d/                       1326   0.0
VHB280 (VHB280Q) /CSM/VH/VHB2-D/VHB280Q.Seq.d/                       1320   0.0
VHA209 (VHA209Q) /CSM/VH/VHA2-A/VHA209Q.Seq.d/                       1320   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ444714) Dictyostelium discoideum cDNA clone:ddv57a12, 3' ...  1267   0.0    2
(BJ444473) Dictyostelium discoideum cDNA clone:ddv56a17, 3' ...  1267   0.0    3
(BJ427204) Dictyostelium discoideum cDNA clone:ddv61l16, 5' ...  1239   0.0    1
(BJ425833) Dictyostelium discoideum cDNA clone:ddv57a12, 5' ...  1239   0.0    1
(BJ364491) Dictyostelium discoideum cDNA clone:ddc31m23, 5' ...  1239   0.0    1
(BJ426127) Dictyostelium discoideum cDNA clone:ddv58b05, 5' ...  1122   0.0    2
(BJ425970) Dictyostelium discoideum cDNA clone:ddv57n15, 5' ...  1122   0.0    1
(BJ425677) Dictyostelium discoideum cDNA clone:ddv56a17, 5' ...  1122   0.0    2
(BJ425659) Dictyostelium discoideum cDNA clone:ddv56n09, 5' ...  1122   0.0    1
(BJ424852) Dictyostelium discoideum cDNA clone:ddv53e22, 5' ...  1122   0.0    1
dna update 2008.12. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001344_1586(CP001344|pid:none) Cyanothece sp. PCC 7425, comple...   250   3e-68
CP001344_4154(CP001344|pid:none) Cyanothece sp. PCC 7425, comple...   249   6e-68
CP001287_390(CP001287|pid:none) Cyanothece sp. PCC 8801, complet...   252   1e-67
BX908798_121(BX908798|pid:none) Parachlamydia-related symbiont U...   252   1e-67
CT573073_696(CT573073|pid:none) Kuenenia stuttgartiensis genome ...   248   1e-67
AM236080_63(AM236080|pid:none) Rhizobium leguminosarum bv. vicia...   250   6e-67
CP000473_7467(CP000473|pid:none) Solibacter usitatus Ellin6076, ...   243   2e-66
AY120852_6(AY120852|pid:none) Synechococcus sp. PCC 7942 PacS, d...   249   2e-66
AY212801_4(AY212801|pid:none) Uncultured bacterium clone VIIC10 ...   245   5e-66
CP000698_2591(CP000698|pid:none) Geobacter uraniireducens Rf4, c...   244   2e-65
protein update 2009. 7.18
PSORT 

 psg: 0.66  gvh: 0.37  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: mitochondrial
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for VHN241 is nuc
5' end seq. ID VHN241F
5' end seq. 
>VHN241F.Seq
TAATGGAACAAAAAAGATTAGATGATTCATTATTAAGAAATTCTGATTGGAAGAATTGGG
GTACCTATGTAAGTGATAGACAATGGGCAACTGTTCGTGAAGATTATGGTGGTGAACCAT
GGACCTACTTTCCACACGATCATGCTAGATCACGTGCATATAGATGGTCAGAGGATAGTA
TTGGTGGATTTTGTAATAGATTTCAAAATATTTGTTTAGGTTTAGCATTTTGGAATGAAA
AAGATCCAATTATTAAAGAGAGATTTTTTGGACTTGGTGGACCAGAAGGAAATCATGGTG
AAGATGTAAAAGAACATTATTTCTATTTAGATAATACACCAACACATTCCTATGCCAAAA
TGTTATATAAATATCCAATGAATGAATATCCATATAGTGATTTAGTATCAACCAATGCAC
AACGTGGTAAACAAGATCCAGAGTATGAAATTGAAGATACTGGTATCTTTGATAAGGATG
AATATTTCGATTGTTACATTGAATATGCTAAAGGAGATCAAGAAGATGATATTTTATGTA
AAGTTACCGTACATAATCGTTCAACCCGATAGAGAAGCAACCATTCATGTACTTCCACAT
CTTTGGTATCGTAATACTTGGTCATGNNNNNNNNNN
Length of 5' end seq. 636
3' end seq. ID VHN241Z
3' end seq. 
>VHN241Z.Seq
NNNNNNNNNNTTTGATTCAATCATTTCACCAGGTTCTCATCAACATCAACTCAAAGTCTA
TTCATTCGTTGGTTTAATACCATTGTTTGCTGCTGAAATTTTGGATTATGATACACTTCA
AGCTTTACCAAAATTCAAAGAACGTTTGGATTGGTTCGTAAAGTATAGACCAAATTTAGT
GAAAAACATTGCTCCATTCACTGCTTTGGGTCAAAATAAATCACGTTTACTCTCAATTGT
AAATCGTGAGAAATTGGAATTAATCTTAAAGAAAATGTTGGATGAAGATTGGTTCCTCTC
TGAAAATGGTATTAGATCATTATCAAAACATCACAAGGATCATCCATTCACTTTTGCTGA
GATGGATGCTTGTGTTGGTTATGTACCTGGCGAGAGTGATGTTCATATCATGGGTTCAAA
TAGTAATTGGAGAGGTCCAGTTTGGTTTGCCGTAAATTATCTCATGATTCAATCACTTCG
TACCTATCATGAATACTATGGTGATGAATTCCAAATTGAATATCCAACAAACTCNTGGTA
ACCTCGTAACTTTGGATATCGTAGCCGATGATATCTCTAAACGTCTCATTAGTATCTTCC
AAGAGAATCAAGATGGTACTAGAAAATTTGCTGGTGGTAAACCAATTTTCGCAAAAAAAC
ATGGAAAGATCATATATTGTTCAATGAATATTTCCATGGTGATAGTGGTGCGGTCTGGGC
TTCTCACCAGAC
Length of 3' end seq. 732
Connected seq. ID VHN241P
Connected seq. 
>VHN241P.Seq
TAATGGAACAAAAAAGATTAGATGATTCATTATTAAGAAATTCTGATTGGAAGAATTGGG
GTACCTATGTAAGTGATAGACAATGGGCAACTGTTCGTGAAGATTATGGTGGTGAACCAT
GGACCTACTTTCCACACGATCATGCTAGATCACGTGCATATAGATGGTCAGAGGATAGTA
TTGGTGGATTTTGTAATAGATTTCAAAATATTTGTTTAGGTTTAGCATTTTGGAATGAAA
AAGATCCAATTATTAAAGAGAGATTTTTTGGACTTGGTGGACCAGAAGGAAATCATGGTG
AAGATGTAAAAGAACATTATTTCTATTTAGATAATACACCAACACATTCCTATGCCAAAA
TGTTATATAAATATCCAATGAATGAATATCCATATAGTGATTTAGTATCAACCAATGCAC
AACGTGGTAAACAAGATCCAGAGTATGAAATTGAAGATACTGGTATCTTTGATAAGGATG
AATATTTCGATTGTTACATTGAATATGCTAAAGGAGATCAAGAAGATGATATTTTATGTA
AAGTTACCGTACATAATCGTTCAACCCGATAGAGAAGCAACCATTCATGTACTTCCACAT
CTTTGGTATCGTAATACTTGGTCATG----------TTTGATTCAATCATTTCACCAGGT
TCTCATCAACATCAACTCAAAGTCTATTCATTCGTTGGTTTAATACCATTGTTTGCTGCT
GAAATTTTGGATTATGATACACTTCAAGCTTTACCAAAATTCAAAGAACGTTTGGATTGG
TTCGTAAAGTATAGACCAAATTTAGTGAAAAACATTGCTCCATTCACTGCTTTGGGTCAA
AATAAATCACGTTTACTCTCAATTGTAAATCGTGAGAAATTGGAATTAATCTTAAAGAAA
ATGTTGGATGAAGATTGGTTCCTCTCTGAAAATGGTATTAGATCATTATCAAAACATCAC
AAGGATCATCCATTCACTTTTGCTGAGATGGATGCTTGTGTTGGTTATGTACCTGGCGAG
AGTGATGTTCATATCATGGGTTCAAATAGTAATTGGAGAGGTCCAGTTTGGTTTGCCGTA
AATTATCTCATGATTCAATCACTTCGTACCTATCATGAATACTATGGTGATGAATTCCAA
ATTGAATATCCAACAAACTCNTGGTAACCTCGTAACTTTGGATATCGTAGCCGATGATAT
CTCTAAACGTCTCATTAGTATCTTCCAAGAGAATCAAGATGGTACTAGAAAATTTGCTGG
TGGTAAACCAATTTTCGCAAAAAAACATGGAAAGATCATATATTGTTCAATGAATATTTC
CATGGTGATAGTGGTGCGGTCTGGGCTTCTCACCAGAC
Length of connected seq. 1348
Full length Seq ID -
Full length Seq. -
Length of full length seq. -