VHN236
Library VH
(Link to library)
Clone ID VHN236
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15950-1
Original site URL
Representative seq. ID VHN236P
(Link to Original site)
Representative DNA sequence
>VHN236 (VHN236Q) /CSM/VH/VHN2-B/VHN236Q.Seq.d/
ATTTAAAAATAAAATAAAAAAAATTAAATTAATTATAAAAAATGGGTAAAGGAAGTGGAG
CTCCTTTAAAGGAGAAAGTTTATCCATCTGTTATGTATGGAAATATTAAACCAATTAGAA
AACAACCAAAATCATTACCAAAAGAATTAACTATTGATCAAATTTTACAATCTCTTCCAA
AAGAAGTTTTTGAAACAAGTAATTTTAAATCAGCATGTTCACTTTTAATAACAATCTTAT
TCATTGGTTTAAGTGCAACATTCATTACTCTCATGCCATCTTACTTAACCCCAATTGGTT
GGATGTTAATGGGTGCCTCAGTTACTGGTTTAATGGTAATTGGTAATGATTGTATTCATA
AAACTTTTTCAAAGAATCCATTAGTTAATTCAATTATTGGAACAATTGTAATGTTACCAT
TGTTATATCCATTCCAATCTTACAAGATTTCAGAAAAGAATAATGCAGAAAAGAAATCGA
CAGCTGTTTTAAATGGTGAACAATTCAAGATTAATGCACATACCACAACCGAAAGTACAA
ATCCAATTAGACAATGGGCAACTGGTAAATTCTTTTGGATTTTATCAATTATTAATTGGT
CTGAAAATTATTTCTCAACTAAAAATTTATCAGATAAAAAAGATXXXXXXXXXXGGTCAA
TTCATTGGCTCATTATTTAGGTGACTCTCCATACGATGATGAACATACTCCAAAGGATTC
AGTTGTGACTGCTATATTAACATTTGGTGAAGGTTATCATAACTTCCATCATGAATTCCC
AAATGACTATAGAAACGCTTATAAATTCTATCAATATGATCCAACTAAATGGTTGATCTC
TGCAATGTATTATTTAGGCTTGGCTTATGATTTGAAAACTTTCTCCAAAAATGAAATTGA
AAAAGGTATGATTCAAATGCACCAAAAACATTTAGACGCAAAGAAACAATCAATNTATTG
GGGTATCAATAAAGAAGATTTACCATCAATGACAATCGATGAATTTAATAATTTGGTTGA
AAAAGAAAATAAAAAGTTAATGATAATCAACAAAACCGTATTAGATGTCGAATCTTTTGT
TAATGATCACCCAGGTGGTTTAGCTTACATTAAAATGGGTATTGGTAAAGATGCAACTTC
AATGTTTACTGGTGAAGTTTATGCTCATTCAAATGCTGCTAAAAATTTATTATGTCAATT
TTCAATTGCTAAAATTGTTGATAATCATGATAAAAAACAACAATAATCAAAAAAACAAAC
AACTTTTAAAATCGGATTAACCCCTATTTTAATTTAATTAAGTTTATAATATTTTAAAAT
ATTATATAATTTNGTTCACTCAAAAATCAAAATTCAATATATTTTTTTATCNA
sequence update 2002.10.25
Translated Amino Acid sequence
lkik*kkln*l*KMGKGSGAPLKEKVYPSVMYGNIKPIRKQPKSLPKELTIDQILQSLPK
EVFETSNFKSACSLLITILFIGLSATFITLMPSYLTPIGWMLMGASVTGLMVIGNDCIHK
TFSKNPLVNSIIGTIVMLPLLYPFQSYKISEKNNAEKKSTAVLNGEQFKINAHTTTESTN
PIRQWATGKFFWILSIINWSENYFSTKNLSDKKD---

---VNSLAHYLGDSPYDDEHTPKDSVVTAILTFGEGYHNFHHEFPNDYRNAYKFYQYDPT
KWLISAMYYLGLAYDLKTFSKNEIEKGMIQMHQKHLDAKKQSXYWGINKEDLPSMTIDEF
NNLVEKENKKLMIINKTVLDVESFVNDHPGGLAYIKMGIGKDATSMFTGEVYAHSNAAKN
LLCQFSIAKIVDNHDKKQQ*skkqttfkigltpili*lsl*yfkilynxvhskikiqyif
ls


Translated Amino Acid sequence (All Frames)
Frame A:
i*k*nkkn*inykkwvkevell*rrkfihllcmeilnqlennqnhyqkn*llikfynlfq
kkflkqvilnqhvhf**qsyslv*vqhsllschlt*pqlvgc*wvpqllv*w*lvmivfi
klfqrih*liqlleql*cyhcyihsnltrfqkrimqkrnrqlf*mvnnsrlmhipqpkvq
iqldngqlvnsfgfyqlliglkiisqlkiyqikk---

---gqfigslfr*lsir**tyskgfscdcyiniw*rls*lps*ipk*l*krl*ilsi*sn
*mvdlcnvlfrlgl*fenflqk*n*krydsnapktfrrketinxlgyq*rrftindnr*i
**fg*krk*kvndnqqnrircrifc**sprwfslh*ngyw*rcnfnvyw*slcsfkcc*k
fimsifnc*nc**s**kttiikktnnf*nrinpyfnlikfiif*nii*fxslknqnsiyf
fi

Frame B:
fknkikkikliikng*rkwssfkgeslsicyvwky*tn*kttkiitkriny*snftissk
rsf*nk*f*ismftfnnnlihwfkcnihyshaillnpnwldvngclsywfngnw**lys*
nffkesis*fnywnncnvtivisipilqdfrke*crkeidscfkw*tiqd*ctyhnrkyk
sn*tmgnw*illdfiny*lv*klfln*kfir*kr---

---VNSLAHYLGDSPYDDEHTPKDSVVTAILTFGEGYHNFHHEFPNDYRNAYKFYQYDPT
KWLISAMYYLGLAYDLKTFSKNEIEKGMIQMHQKHLDAKKQSXYWGINKEDLPSMTIDEF
NNLVEKENKKLMIINKTVLDVESFVNDHPGGLAYIKMGIGKDATSMFTGEVYAHSNAAKN
LLCQFSIAKIVDNHDKKQQ*skkqttfkigltpili*lsl*yfkilynxvhskikiqyif
ls

Frame C:
lkik*kkln*l*KMGKGSGAPLKEKVYPSVMYGNIKPIRKQPKSLPKELTIDQILQSLPK
EVFETSNFKSACSLLITILFIGLSATFITLMPSYLTPIGWMLMGASVTGLMVIGNDCIHK
TFSKNPLVNSIIGTIVMLPLLYPFQSYKISEKNNAEKKSTAVLNGEQFKINAHTTTESTN
PIRQWATGKFFWILSIINWSENYFSTKNLSDKKD---

---sihwlii*vtlhtmmnilqriql*lly*hlvkviitsimnsqmtietlinsinmiql
ng*slqcii*awlmi*klspkmklkkv*fkctkni*tqrnnqxigvsikkiyhq*qsmnl
iiwlkkkiks***stkpy*msnlllmitqvv*ltlkwvlvkmqlqcllvkfmliqmllki
yyvnfqllklliimiknnnnqknkqllksd*plf*fn*vynilkyyiixftqkskfniff
yx

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHN236 (VHN236Q) /CSM/VH/VHN2-B/VHN236Q.Seq.d/ 1871 0.0
VHP282 (VHP282Q) /CSM/VH/VHP2-D/VHP282Q.Seq.d/ 1193 0.0
VHM219 (VHM219Q) /CSM/VH/VHM2-A/VHM219Q.Seq.d/ 1193 0.0
VHC577 (VHC577Q) /CSM/VH/VHC5-D/VHC577Q.Seq.d/ 1106 0.0
VHE192 (VHE192Q) /CSM/VH/VHE1-D/VHE192Q.Seq.d/ 1009 0.0
VHD425 (VHD425Q) /CSM/VH/VHD4-B/VHD425Q.Seq.d/ 995 0.0
VHQ401 (VHQ401Q) /CSM/VH/VHQ4-A/VHQ401Q.Seq.d/ 991 0.0
VHD588 (VHD588Q) /CSM/VH/VHD5-D/VHD588Q.Seq.d/ 985 0.0
VHC288 (VHC288Q) /CSM/VH/VHC2-D/VHC288Q.Seq.d/ 981 0.0
VHA229 (VHA229Q) /CSM/VH/VHA2-B/VHA229Q.Seq.d/ 975 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ427237) Dictyostelium discoideum cDNA clone:ddv61c22, 5' ... 1191 0.0 1
(BJ425862) Dictyostelium discoideum cDNA clone:ddv57g10, 5' ... 1191 0.0 1
(BJ425235) Dictyostelium discoideum cDNA clone:ddv55e06, 5' ... 1191 0.0 1
(BJ419679) Dictyostelium discoideum cDNA clone:ddv36i19, 5' ... 1047 0.0 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 714 0.0 2
(BJ446184) Dictyostelium discoideum cDNA clone:ddv61m24, 3' ... 714 0.0 2
(BJ444743) Dictyostelium discoideum cDNA clone:ddv57g10, 3' ... 714 0.0 2
(BJ441648) Dictyostelium discoideum cDNA clone:ddv47k11, 3' ... 714 0.0 2
(BJ441339) Dictyostelium discoideum cDNA clone:ddv46m07, 3' ... 714 0.0 2
(BJ438941) Dictyostelium discoideum cDNA clone:ddv38o21, 3' ... 714 0.0 2
dna update 2008.12. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116984_117(AC116984|pid:none) Dictyostelium discoideum chromos... 400 e-110
AF085500_1(AF085500|pid:none) Mortierella alpina delta nine desa... 222 3e-56
Y18553_1(Y18553|pid:none) Mortierella alpina ole1 gene for stear... 222 3e-56
Y18554_1(Y18554|pid:none) Mortierella alpina ole2 gene for stear... 221 5e-56
AB196774_1(AB196774|pid:none) Mortierella alpina gene for omega9... 218 3e-55
AB195980_1(AB195980|pid:none) Mortierella alpina gene for omega9... 218 5e-55
AY576801_1(AY576801|pid:none) Hortaea werneckii putative delta-9... 217 7e-55
DQ901954_1(DQ901954|pid:none) Aureobasidium pullulans putative d... 215 3e-54
AP007162_283(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 214 5e-54
AP007151_392(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 214 6e-54
protein update 2009. 7.18
PSORT

psg: 0.66 gvh: 0.28 alm: 0.22 top: 0.63 tms: 0.07 mit: 0.20 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.04 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
24.0 %: mitochondrial
24.0 %: nuclear
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for VHN236 is cyt

5' end seq. ID VHN236F
5' end seq.
>VHN236F.Seq
ATTTAAAAATAAAATAAAAAAAATTAAATTAATTATAAAAAATGGGTAAAGGAAGTGGAG
CTCCTTTAAAGGAGAAAGTTTATCCATCTGTTATGTATGGAAATATTAAACCAATTAGAA
AACAACCAAAATCATTACCAAAAGAATTAACTATTGATCAAATTTTACAATCTCTTCCAA
AAGAAGTTTTTGAAACAAGTAATTTTAAATCAGCATGTTCACTTTTAATAACAATCTTAT
TCATTGGTTTAAGTGCAACATTCATTACTCTCATGCCATCTTACTTAACCCCAATTGGTT
GGATGTTAATGGGTGCCTCAGTTACTGGTTTAATGGTAATTGGTAATGATTGTATTCATA
AAACTTTTTCAAAGAATCCATTAGTTAATTCAATTATTGGAACAATTGTAATGTTACCAT
TGTTATATCCATTCCAATCTTACAAGATTTCAGAAAAGAATAATGCAGAAAAGAAATCGA
CAGCTGTTTTAAATGGTGAACAATTCAAGATTAATGCACATACCACAACCGAAAGTACAA
ATCCAATTAGACAATGGGCAACTGGTAAATTCTTTTGGATTTTATCAATTATTAATTGGT
CTGAAAATTATTTCTCAACTAAAAATTTATCAGATAAAAAAGATNNNNNNNNNN
Length of 5' end seq. 654
3' end seq. ID VHN236Z
3' end seq.
>VHN236Z.Seq
NNNNNNNNNNGGTCAATTCATTGGCTCATTATTTAGGTGACTCTCCATACGATGATGAAC
ATACTCCAAAGGATTCAGTTGTGACTGCTATATTAACATTTGGTGAAGGTTATCATAACT
TCCATCATGAATTCCCAAATGACTATAGAAACGCTTATAAATTCTATCAATATGATCCAA
CTAAATGGTTGATCTCTGCAATGTATTATTTAGGCTTGGCTTATGATTTGAAAACTTTCT
CCAAAAATGAAATTGAAAAAGGTATGATTCAAATGCACCAAAAACATTTAGACGCAAAGA
AACAATCAATNTATTGGGGTATCAATAAAGAAGATTTACCATCAATGACAATCGATGAAT
TTAATAATTTGGTTGAAAAAGAAAATAAAAAGTTAATGATAATCAACAAAACCGTATTAG
ATGTCGAATCTTTTGTTAATGATCACCCAGGTGGTTTAGCTTACATTAAAATGGGTATTG
GTAAAGATGCAACTTCAATGTTTACTGGTGAAGTTTATGCTCATTCAAATGCTGCTAAAA
ATTTATTATGTCAATTTTCAATTGCTAAAATTGTTGATAATCATGATAAAAAACAACAAT
AATCAAAAAAACAAACAACTTTTAAAATCGGATTAACCCCTATTTTAATTTAATTAAGTT
TATAATATTTTAAAATATTATATAATTTNGTTCACTCAAAAATCAAAATTCAATATATTT
TTTTATCNA
Length of 3' end seq. 729
Connected seq. ID VHN236P
Connected seq.
>VHN236P.Seq
ATTTAAAAATAAAATAAAAAAAATTAAATTAATTATAAAAAATGGGTAAAGGAAGTGGAG
CTCCTTTAAAGGAGAAAGTTTATCCATCTGTTATGTATGGAAATATTAAACCAATTAGAA
AACAACCAAAATCATTACCAAAAGAATTAACTATTGATCAAATTTTACAATCTCTTCCAA
AAGAAGTTTTTGAAACAAGTAATTTTAAATCAGCATGTTCACTTTTAATAACAATCTTAT
TCATTGGTTTAAGTGCAACATTCATTACTCTCATGCCATCTTACTTAACCCCAATTGGTT
GGATGTTAATGGGTGCCTCAGTTACTGGTTTAATGGTAATTGGTAATGATTGTATTCATA
AAACTTTTTCAAAGAATCCATTAGTTAATTCAATTATTGGAACAATTGTAATGTTACCAT
TGTTATATCCATTCCAATCTTACAAGATTTCAGAAAAGAATAATGCAGAAAAGAAATCGA
CAGCTGTTTTAAATGGTGAACAATTCAAGATTAATGCACATACCACAACCGAAAGTACAA
ATCCAATTAGACAATGGGCAACTGGTAAATTCTTTTGGATTTTATCAATTATTAATTGGT
CTGAAAATTATTTCTCAACTAAAAATTTATCAGATAAAAAAGAT----------GGTCAA
TTCATTGGCTCATTATTTAGGTGACTCTCCATACGATGATGAACATACTCCAAAGGATTC
AGTTGTGACTGCTATATTAACATTTGGTGAAGGTTATCATAACTTCCATCATGAATTCCC
AAATGACTATAGAAACGCTTATAAATTCTATCAATATGATCCAACTAAATGGTTGATCTC
TGCAATGTATTATTTAGGCTTGGCTTATGATTTGAAAACTTTCTCCAAAAATGAAATTGA
AAAAGGTATGATTCAAATGCACCAAAAACATTTAGACGCAAAGAAACAATCAATNTATTG
GGGTATCAATAAAGAAGATTTACCATCAATGACAATCGATGAATTTAATAATTTGGTTGA
AAAAGAAAATAAAAAGTTAATGATAATCAACAAAACCGTATTAGATGTCGAATCTTTTGT
TAATGATCACCCAGGTGGTTTAGCTTACATTAAAATGGGTATTGGTAAAGATGCAACTTC
AATGTTTACTGGTGAAGTTTATGCTCATTCAAATGCTGCTAAAAATTTATTATGTCAATT
TTCAATTGCTAAAATTGTTGATAATCATGATAAAAAACAACAATAATCAAAAAAACAAAC
AACTTTTAAAATCGGATTAACCCCTATTTTAATTTAATTAAGTTTATAATATTTTAAAAT
ATTATATAATTTNGTTCACTCAAAAATCAAAATTCAATATATTTTTTTATCNA
Length of connected seq. 1363
Full length Seq ID -
Full length Seq. -
Length of full length seq. -