VHN220
Library VH
(Link to library)
Clone ID VHN220
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15495-1
Original site URL
Representative seq. ID VHN220P
(Link to Original site)
Representative DNA sequence
>VHN220 (VHN220Q) /CSM/VH/VHN2-A/VHN220Q.Seq.d/
AATTTTTTATATTCCATAAAAAAAAAGTAAATAATTATCTCTTTCTTTTTTCTTCAATAC
AATATATATACATACAAATAAAATAAAATGAGCTGGCAACAATACGTCGATGAACAATTA
ACTGGTGCAGGACTTTCTCAAGGAGCAATTTTAGGTGCAAATGATGGTGGTGTTTGGGCT
AAATCATCAGGTATTAATATTACTAAACCAGAAGGTGATGGTATAGCTGCTTTATTCAAA
AATCCAGCTGAGGTATTTGCTAAGGGTGCTTTGATTGGTGGAGTAAAATATATGGGTATT
AAGGGTGACCCACAAAGTATCTATGGTAAAAAGGGAGCAACTGGTTGTGTTCTTGTTAGA
ACAGGCCAAGCAATCATTGTTGGCATTTATGATGATAAAGTCCAACCAGGATCAGCTGCA
CTTATTGTTGAAAAGTTAGGTGATTACTTAAGAGATAATGGTTATTAAGATATTAATATC
TTGTTAAAACCAATTAGATTTAATTTTAAGAATTAAAAAAAATAATAATAATAATAAAAT
TTAAATGTCACTACTAAAAAAAAAAXXXXXXXXXXAATTTTTTATATTCCATAAAAAAAA
AGTAAATTAATTATCTCTTTCTTTTTTCTTCAAATACAATATATATACATACAAATAAAA
TAAAATGAGCTGGCAACAATACGTCGATGAACAATTAACTGGTGCAGGACTTTCTCAAGG
AGCAATTTTAGGTGCAAATGATGGTGGTGTTTGGGCTAAATCATCAGGTATTAATATTAC
TAAACCAGAAGGTGATGGTATAGCTGCTTTATTCAAAAATCCAGCTGAGGTATTTGCTAA
GGGTGCTTTGATTGGTGGAGTAAAATATATGGGTATTAAGGGTGACCCACAAAGTATCTA
TGGTAAAAAGGGAGCAACTGGTTGTGTTCTTGTTAGAACAGGCCAAGCAATCATTGTTGG
CATTTATGATGATAAAGTCCAACCAGGATCAGCTGCACTTATTGTGAAAAGTTAGGTNAT
TACTTAAGAGATAATGGTTATTAAGATATTAATATCTTGTTAAAACCAATTAGATTNATT
TTAAGAATAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
nflysikkk*iiisffflqyniytyk*nkmswqqyvdeqltgaglsqgailgandggvwa
kssginitkpegdgiaalfknpaevfakgaliggvkymgikgdpqsiygkkgatgcvlvr
tgqaiivgiyddkvqpgsaaliveklgdylrdngy*dinillkpirfnfkn*kk*****N
LNVTTKKK---

---FFIFHKKKVN*lslsfffkyniytyk*nkmswqqyvdeqltgaglsqgailgandgg
vwakssginitkpegdgiaalfknpaevfakgaliggvkymgikgdpqsiygkkgatgcv
lvrtgqaiivgiyddkvqpgsaalivks*vit*eimvikilisc*nqldxf*e*kk


Translated Amino Acid sequence (All Frames)
Frame A:
nflysikkk*iiisffflqyniytyk*nkmswqqyvdeqltgaglsqgailgandggvwa
kssginitkpegdgiaalfknpaevfakgaliggvkymgikgdpqsiygkkgatgcvlvr
tgqaiivgiyddkvqpgsaaliveklgdylrdngy*dinillkpirfnfkn*kk*****N
LNVTTKKK---

---nflysikkk*inylflfssntiyihtnkik*agnntsmnn*lvqdflkeqf*vqmmv
vfglnhqvlillnqkvmv*llyskiqlryllrvl*lve*niwvlrvthkvsmvkreqlvv
flleqakqsllafmmiksnqdqlhll*kvrxllkr*wllry*ylvktn*ixfknkk

Frame B:
ifyip*kksk*lslsfffntiyihtnkik*agnntsmnn*lvqdflkeqf*vqmmvvfgl
nhqvlillnqkvmv*llyskiqlryllrvl*lve*niwvlrvthkvsmvkreqlvvflle
qakqsllafmmiksnqdqlhlllks*vit*eimvikilisc*nqldlilrikknnnnnki
*msllkkk---

---ifyip*kkskliisffflqiqyiyiqik*nelatirr*tinwcrtfsrsnfrck*ww
clg*iiry*yy*trr*wyscfiqkss*gic*gcfdwwskiygy*g*ptkylw*kgsnwlc
sc*nrpsnhcwhl***sptrisctyceklgxylrdngy*dinillkpirxilrikk

Frame C:
ffifhkkkvnnylflfssiqyiyiqik*nelatirr*tinwcrtfsrsnfrck*wwclg*
iiry*yy*trr*wyscfiqkss*gic*gcfdwwskiygy*g*ptkylw*kgsnwlcsc*n
rpsnhcwhl***sptrisctyc*kvr*llkr*wllry*ylvktn*i*f*elkkiiiiikf
kchy*kk---

---FFIFHKKKVN*lslsfffkyniytyk*nkmswqqyvdeqltgaglsqgailgandgg
vwakssginitkpegdgiaalfknpaevfakgaliggvkymgikgdpqsiygkkgatgcv
lvrtgqaiivgiyddkvqpgsaalivks*vit*eimvikilisc*nqldxf*e*kk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHN220 (VHN220Q) /CSM/VH/VHN2-A/VHN220Q.Seq.d/ 965 0.0
VSG766 (VSG766Q) /CSM/VS/VSG7-C/VSG766Q.Seq.d/ 934 0.0
VHL739 (VHL739Q) /CSM/VH/VHL7-B/VHL739Q.Seq.d/ 934 0.0
VHG720 (VHG720Q) /CSM/VH/VHG7-A/VHG720Q.Seq.d/ 934 0.0
VHA334 (VHA334Q) /CSM/VH/VHA3-B/VHA334Q.Seq.d/ 934 0.0
SSK539 (SSK539Q) /CSM/SS/SSK5-B/SSK539Q.Seq.d/ 934 0.0
SSI784 (SSI784Q) /CSM/SS/SSI7-D/SSI784Q.Seq.d/ 934 0.0
AHG757 (AHG757Q) /CSM/AH/AHG7-C/AHG757Q.Seq.d/ 934 0.0
AHI678 (AHI678Q) /CSM/AH/AHI6-D/AHI678Q.Seq.d/ 924 0.0
SSI218 (SSI218Q) /CSM/SS/SSI2-A/SSI218Q.Seq.d/ 920 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ444660) Dictyostelium discoideum cDNA clone:ddv57g06, 3' ... 954 0.0 2
(BJ425042) Dictyostelium discoideum cDNA clone:ddv54n09, 5' ... 841 0.0 3
(BJ333917) Dictyostelium discoideum cDNA clone:dda44b15, 5' ... 841 0.0 3
(BJ426079) Dictyostelium discoideum cDNA clone:ddv57g06, 5' ... 906 0.0 2
(C94205) Dictyostelium discoideum slug cDNA, clone SSK539. 841 0.0 2
(BJ417990) Dictyostelium discoideum cDNA clone:ddv31d09, 5' ... 841 0.0 2
(BJ333111) Dictyostelium discoideum cDNA clone:dda41a18, 5' ... 841 0.0 2
(AU266795) Dictyostelium discoideum vegetative cDNA clone:VS... 841 0.0 2
(BJ421865) Dictyostelium discoideum cDNA clone:ddv44h05, 5' ... 841 0.0 2
(BJ440566) Dictyostelium discoideum cDNA clone:ddv44h05, 3' ... 841 0.0 2
dna update 2008.12. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

S13199(S13199)profilin - slime mold (Physarum polycephalum) 154 5e-36
(P26200) RecName: Full=Profilin-2; AltName: Full=Profilin II; &... 135 3e-30
(Q95VF7) RecName: Full=Profilin-1B; AltName: Full=Profilin IB; A... 124 4e-27
(P68696) RecName: Full=Profilin-1A; AltName: Full=Profilin IA; A... 124 8e-27
C48405(C48405)profilin-IB - Acanthamoeba sp. (tentative sequence) 123 1e-26
NRL(1ACF) Profilin i - Acanthamoeba castellanii 122 3e-26
NRL(2PRF) Profilin ia (nmr, 19 structures) - Acanthamoeba sp. 122 3e-26
(Q8T8M2) RecName: Full=Profilin-3; AltName: Full=Profilin III; ... 113 1e-23
AY894660_1(AY894660|pid:none) Ambrosia artemisiifolia profilin i... 108 3e-22
(Q5FX67) RecName: Full=Profilin; AltName: Full=Pollen allergen C... 108 3e-22
protein update 2009. 7.18
PSORT -
5' end seq. ID VHN220F
5' end seq.
>VHN220F.Seq
AATTTTTTATATTCCATAAAAAAAAAGTAAATAATTATCTCTTTCTTTTTTCTTCAATAC
AATATATATACATACAAATAAAATAAAATGAGCTGGCAACAATACGTCGATGAACAATTA
ACTGGTGCAGGACTTTCTCAAGGAGCAATTTTAGGTGCAAATGATGGTGGTGTTTGGGCT
AAATCATCAGGTATTAATATTACTAAACCAGAAGGTGATGGTATAGCTGCTTTATTCAAA
AATCCAGCTGAGGTATTTGCTAAGGGTGCTTTGATTGGTGGAGTAAAATATATGGGTATT
AAGGGTGACCCACAAAGTATCTATGGTAAAAAGGGAGCAACTGGTTGTGTTCTTGTTAGA
ACAGGCCAAGCAATCATTGTTGGCATTTATGATGATAAAGTCCAACCAGGATCAGCTGCA
CTTATTGTTGAAAAGTTAGGTGATTACTTAAGAGATAATGGTTATTAAGATATTAATATC
TTGTTAAAACCAATTAGATTTAATTTTAAGAATTAAAAAAAATAATAATAATAATAAAAT
TTAAATGTCACTACTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 575
3' end seq. ID VHN220Z
3' end seq.
>VHN220Z.Seq
NNNNNNNNNNAATTTTTTATATTCCATAAAAAAAAAGTAAATTAATTATCTCTTTCTTTT
TTCTTCAAATACAATATATATACATACAAATAAAATAAAATGAGCTGGCAACAATACGTC
GATGAACAATTAACTGGTGCAGGACTTTCTCAAGGAGCAATTTTAGGTGCAAATGATGGT
GGTGTTTGGGCTAAATCATCAGGTATTAATATTACTAAACCAGAAGGTGATGGTATAGCT
GCTTTATTCAAAAATCCAGCTGAGGTATTTGCTAAGGGTGCTTTGATTGGTGGAGTAAAA
TATATGGGTATTAAGGGTGACCCACAAAGTATCTATGGTAAAAAGGGAGCAACTGGTTGT
GTTCTTGTTAGAACAGGCCAAGCAATCATTGTTGGCATTTATGATGATAAAGTCCAACCA
GGATCAGCTGCACTTATTGTGAAAAGTTAGGTNATTACTTAAGAGATAATGGTTATTAAG
ATATTAATATCTTGTTAAAACCAATTAGATTNATTTTAAGAATAAAAAAAA
Length of 3' end seq. 531
Connected seq. ID VHN220P
Connected seq.
>VHN220P.Seq
AATTTTTTATATTCCATAAAAAAAAAGTAAATAATTATCTCTTTCTTTTTTCTTCAATAC
AATATATATACATACAAATAAAATAAAATGAGCTGGCAACAATACGTCGATGAACAATTA
ACTGGTGCAGGACTTTCTCAAGGAGCAATTTTAGGTGCAAATGATGGTGGTGTTTGGGCT
AAATCATCAGGTATTAATATTACTAAACCAGAAGGTGATGGTATAGCTGCTTTATTCAAA
AATCCAGCTGAGGTATTTGCTAAGGGTGCTTTGATTGGTGGAGTAAAATATATGGGTATT
AAGGGTGACCCACAAAGTATCTATGGTAAAAAGGGAGCAACTGGTTGTGTTCTTGTTAGA
ACAGGCCAAGCAATCATTGTTGGCATTTATGATGATAAAGTCCAACCAGGATCAGCTGCA
CTTATTGTTGAAAAGTTAGGTGATTACTTAAGAGATAATGGTTATTAAGATATTAATATC
TTGTTAAAACCAATTAGATTTAATTTTAAGAATTAAAAAAAATAATAATAATAATAAAAT
TTAAATGTCACTACTAAAAAAAAAA----------AATTTTTTATATTCCATAAAAAAAA
AGTAAATTAATTATCTCTTTCTTTTTTCTTCAAATACAATATATATACATACAAATAAAA
TAAAATGAGCTGGCAACAATACGTCGATGAACAATTAACTGGTGCAGGACTTTCTCAAGG
AGCAATTTTAGGTGCAAATGATGGTGGTGTTTGGGCTAAATCATCAGGTATTAATATTAC
TAAACCAGAAGGTGATGGTATAGCTGCTTTATTCAAAAATCCAGCTGAGGTATTTGCTAA
GGGTGCTTTGATTGGTGGAGTAAAATATATGGGTATTAAGGGTGACCCACAAAGTATCTA
TGGTAAAAAGGGAGCAACTGGTTGTGTTCTTGTTAGAACAGGCCAAGCAATCATTGTTGG
CATTTATGATGATAAAGTCCAACCAGGATCAGCTGCACTTATTGTGAAAAGTTAGGTNAT
TACTTAAGAGATAATGGTTATTAAGATATTAATATCTTGTTAAAACCAATTAGATTNATT
TTAAGAATAAAAAAAA
Length of connected seq. 1086
Full length Seq ID -
Full length Seq. -
Length of full length seq. -