VHN217 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHN217
Library	VH (Link to library)
Clone ID	VHN217 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15717-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHN2-A/VHN217Q.Seq.d/
Representative seq. ID	VHN217P (Link to Original site)
Representative DNA sequence	>VHN217 (VHN217Q) /CSM/VH/VHN2-A/VHN217Q.Seq.d/ TATTTTTTTTTATATATTATATAATTAAAAAAAAAATAATTATAAAATGAACTCACTCGT TAAGGGTATTTCCAAAGTTAGGTCAACTTNATCTTTTTCAACAGTATCAATGGGTCCTCT TGAACCAAACAAGAAACTCGACTACGAAGGTATTGATGCTAAATTAAAACAATTCANACT CCATCACAACAAACCACTCACCCTTGCTGAAAAGATCATTTATGGTCATTTANAANATCC ATCAACTAAAGTTGAAAGAGGTATCACTTATCTTAAATTACATCCANATCGTGTTGCTAT GCAANATGCCACCGCACAAATGGCTGTATTACAATTTATGTCAGCTGGTTTACCANAAAC TGCAGTACCAACAACAATTCATTGNGATCATTTAATTGAAGCATATAAAGGNGGTGAAAA ANATTTANAAGTTGCAAAAGATATCAATAAAGAAGTTTACGATTTCCTTTCAACCAGTGC TAAAAAATTTGGTATGGGTTTCTGGAAGCCAGGTTCAGGTATTATCCATCAAATCGTTTT ANAAAATTATGCATTCCCAGGTGGTTTAATGATTGGXXXXXXXXXXTGATGAACTCCCAT CACGTGGTTTTGATGCCGGTGAAAACACTTACCAACCACCATCACCAAATGGTCAAAACA TTAACGTTATCGTTGATTCAGAAAGCAGCAGATTACAATTACTCCAACCATTTGCCCCAT GGGATAAGAAAGATTTAGTCGATATGCAAGTTCTCATCAAGGTTCAAGGTAAATGTACCA CCGATCACATCTCTATGGCTGGTCCATGGTTGAAATACAGAGGTCATTTGGATAACATTT CCAACAATATGTTAATTGGTGCTATCAACTCTGAAAACGGTAAAGCCAACGCTGTTCTCA ATCAATTCACTGGTGAAATCGGTCCAGTCCCAACCGTCGCTCGTGACTACAAGAAACGTG GTGTCAATTGGATCGTCGTTGGTGATGAAAACTATGGTGAAGGTTCATCTCGTGAACATG CTGCCCTCGAACCACGTCATCTCGGTGGTAAAGCTATCCTCGTTAAATCATTTGCTCGTA TCCACGAAACCAATCTCAAGAAACAAGGTATCTTACCATTAACCTTTGCTAACCCATCNT GATTACGATAAAATCTCTGGTGACGATCGTATTTCAATCATTGGTCTCAAAGATCTTGCC CCAGGTAAACAACTCACTCTCATTGTTAAATCTGCTAAACAAGGTTCTGAATTNAAATTA AAGCAATCACACCATGAATGCGGTCAAATCGAAGGTTCAAAGCGGTTCCGCTT
sequence update	2002.10.25
Translated Amino Acid sequence	iffyilynKKNNYKMNSLVKGISKVRSTXSFSTVSMGPLEPNKKLDYEGIDAKLKQFXL HHNKPLTLAEKIIYGHLXXPSTKVERGITYLKLHPXRVAMQXATAQMAVLQFMSAGLPXT AVPTTIHXDHLIEAYKGGEKXLXVAKDINKEVYDFLSTSAKKFGMGFWKPGSGIIHQIVL XNYAFPGGLMI--- ---DELPSRGFDAGENTYQPPSPNGQNINVIVDSESSRLQLLQPFAPWDKKDLVDMQVLI KVQGKCTTDHISMAGPWLKYRGHLDNISNNMLIGAINSENGKANAVLNQFTGEIGPVPTV ARDYKKRGVNWIVVGDENYGEGSSREHAALEPRHLGGKAILVKSFARIHETNLKKQGILP LTFANPSlrnlwrsyfnhwsqrscprtthshcictrfixikaitp*mrsnrrf kavpl
Translated Amino Acid sequence (All Frames)	Frame A: yfflyiilkkklneltrgyfqsvnxiffnsingsstkqetrlrryciktixt psqqtthpckdhlwsfxxsinskryhlsitsxsccyaxchrtngcitiyvswftxn cstnnnslxsfnsirxkxfxsckryqrslrfpfnqckiwygflearfryypsnrf xklciprwfndw--- ---tpitwfcrkhlpttitkwskhryrfrkqqititpticpmgerfsryassh qgsrmyhrshlygwsmveiqrsfghfqqyvnwcyqlkrsqrcsqsihwnrsspnr rslqetwcqldrrw*klwrfistccprttssrwsypriicsyprnqsqetrylt inlcpixitikslvtivfqslvskilpqvnnslsllnllnkvlnxnsnhtmnavkskv qsgsa Frame B: iffyilynKKNNYKMNSLVKGISKVRSTXSFSTVSMGPLEPNKKLDYEGIDAKLKQFXL HHNKPLTLAEKIIYGHLXXPSTKVERGITYLKLHPXRVAMQXATAQMAVLQFMSAGLPXT AVPTTIHXDHLIEAYKGGEKXLXVAKDINKEVYDFLSTSAKKFGMGFWKPGSGIIHQIVL XNYAFPGGLMI--- ---DELPSRGFDAGENTYQPPSPNGQNINVIVDSESSRLQLLQPFAPWDKKDLVDMQVLI KVQGKCTTDHISMAGPWLKYRGHLDNISNNMLIGAINSENGKANAVLNQFTGEIGPVPTV ARDYKKRGVNWIVVGDENYGEGSSREHAALEPRHLGGKAILVKSFARIHETNLKKQGILP LTFANPSlrnlwrsyfnhwsqrscprtthshcictrfixikaitpmrsnrrf kavpl Frame C: fffiyyiikkkiiikthslrvfpklgqlxlfqqyqwvllnqtrnsttkvlmlnnnsxs ittnhspllkrsfmvixxihqlklkevslilnyixivllcxmpphkwlyynlcqlvyxkl qyqqqfixiilkhikxvkxixklqkisikkftisfqpvlknlvwvsgsqvqvlsiksfx kimhsqvvl--- ---mnshhvvlmpvktltnhhhqmvktltlsliqkaadynysnhlphgirkisickfss rfkvnvppitslwlvhgnteviwitfpticlvlstlktvkptlfsinslvksvqsqps lvttrnvvsigsslvmktmvkvhlvnmlpsnhvisvvklsslnhllvstkpisrnkvsyh *pllthxdydkisgddrisiiglkdlapgkqltlivksakqgsexklkqshhecgqiegs krfr
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHN217 (VHN217Q) /CSM/VH/VHN2-A/VHN217Q.Seq.d/ 2401 0.0 VHJ867 (VHJ867Q) /CSM/VH/VHJ8-C/VHJ867Q.Seq.d/ 1356 0.0 VHJ814 (VHJ814Q) /CSM/VH/VHJ8-A/VHJ814Q.Seq.d/ 1350 0.0 VHO133 (VHO133Q) /CSM/VH/VHO1-B/VHO133Q.Seq.d/ 1277 0.0 VHJ504 (VHJ504Q) /CSM/VH/VHJ5-A/VHJ504Q.Seq.d/ 1269 0.0 VHC367 (VHC367Q) /CSM/VH/VHC3-C/VHC367Q.Seq.d/ 1257 0.0 VHD386 (VHD386Q) /CSM/VH/VHD3-D/VHD386Q.Seq.d/ 1227 0.0 VHF201 (VHF201Q) /CSM/VH/VHF2-A/VHF201Q.Seq.d/ 1217 0.0 CHQ607 (CHQ607Q) /CSM/CH/CHQ6-A/CHQ607Q.Seq.d/ 1191 0.0 SLA476 (SLA476Q) /CSM/SL/SLA4-D/SLA476Q.Seq.d/ 1049 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ444634) Dictyostelium discoideum cDNA clone:ddv57a06, 3' ... 1429 0.0 1 (BJ442525) Dictyostelium discoideum cDNA clone:ddv50l04, 3' ... 1094 0.0 3 (BJ442653) Dictyostelium discoideum cDNA clone:ddv50f18, 3' ... 1076 0.0 4 (BJ445359) Dictyostelium discoideum cDNA clone:ddv59a09, 3' ... 1007 0.0 3 (BJ442499) Dictyostelium discoideum cDNA clone:ddv50g01, 3' ... 999 0.0 4 (BJ437847) Dictyostelium discoideum cDNA clone:ddv35f17, 3' ... 987 0.0 4 (BJ439599) Dictyostelium discoideum cDNA clone:ddv41a02, 3' ... 973 0.0 4 (BJ385501) Dictyostelium discoideum cDNA clone:ddc55m02, 3' ... 959 0.0 3 (BJ438430) Dictyostelium discoideum cDNA clone:ddv37l21, 3' ... 950 0.0 4 (C25574) Dictyostelium discoideum slug cDNA, clone SLA476. 793 0.0 3
dna update	2008.12. 4
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AB105050_1(AB105050\|pid:none) Antheraea yamamai mRNA for hypothe... 283 1e-82 BC058049_1(BC058049\|pid:none) Danio rerio aconitase 2, mitochond... 276 4e-80 AE014134_3462(AE014134\|pid:none) Drosophila melanogaster chromos... 285 1e-79 AE014134_3463(AE014134\|pid:none) Drosophila melanogaster chromos... 285 1e-79 (P49609) RecName: Full=Aconitate hydratase, mitochondrial; ... 280 1e-79 AJ245736_1(AJ245736\|pid:none) Daphnia pulex mRNA for aconitase. 275 8e-79 (Q99KI0) RecName: Full=Aconitate hydratase, mitochondrial; ... 280 2e-78 Z49931_1(Z49931\|pid:none) B.taurus mRNA for mitochondrial aconit... 277 2e-78 BC102642_1(BC102642\|pid:none) Bos taurus aconitase 2, mitochondr... 277 2e-78 (P20004) RecName: Full=Aconitate hydratase, mitochondrial; ... 277 2e-78
protein update	2009. 7.18
PSORT	psg: 0.75 gvh: 0.42 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.04 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: mitochondrial 32.0 %: nuclear 16.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: peroxisomal >> prediction for VHN217 is mit
5' end seq. ID	VHN217F
5' end seq.	>VHN217F.Seq TATTTTTTTTTATATATTATATAATTAAAAAAAAAATAATTATAAAATGAACTCACTCGT TAAGGGTATTTCCAAAGTTAGGTCAACTTNATCTTTTTCAACAGTATCAATGGGTCCTCT TGAACCAAACAAGAAACTCGACTACGAAGGTATTGATGCTAAATTAAAACAATTCANACT CCATCACAACAAACCACTCACCCTTGCTGAAAAGATCATTTATGGTCATTTANAANATCC ATCAACTAAAGTTGAAAGAGGTATCACTTATCTTAAATTACATCCANATCGTGTTGCTAT GCAANATGCCACCGCACAAATGGCTGTATTACAATTTATGTCAGCTGGTTTACCANAAAC TGCAGTACCAACAACAATTCATTGNGATCATTTAATTGAAGCATATAAAGGNGGTGAAAA ANATTTANAAGTTGCAAAAGATATCAATAAAGAAGTTTACGATTTCCTTTCAACCAGTGC TAAAAAATTTGGTATGGGTTTCTGGAAGCCAGGTTCAGGTATTATCCATCAAATCGTTTT ANAAAATTATGCATTCCCAGGTGGTTTAATGATTGGNNNNNNNNNN
Length of 5' end seq.	586
3' end seq. ID	VHN217Z
3' end seq.	>VHN217Z.Seq NNNNNNNNNNTGATGAACTCCCATCACGTGGTTTTGATGCCGGTGAAAACACTTACCAAC CACCATCACCAAATGGTCAAAACATTAACGTTATCGTTGATTCAGAAAGCAGCAGATTAC AATTACTCCAACCATTTGCCCCATGGGATAAGAAAGATTTAGTCGATATGCAAGTTCTCA TCAAGGTTCAAGGTAAATGTACCACCGATCACATCTCTATGGCTGGTCCATGGTTGAAAT ACAGAGGTCATTTGGATAACATTTCCAACAATATGTTAATTGGTGCTATCAACTCTGAAA ACGGTAAAGCCAACGCTGTTCTCAATCAATTCACTGGTGAAATCGGTCCAGTCCCAACCG TCGCTCGTGACTACAAGAAACGTGGTGTCAATTGGATCGTCGTTGGTGATGAAAACTATG GTGAAGGTTCATCTCGTGAACATGCTGCCCTCGAACCACGTCATCTCGGTGGTAAAGCTA TCCTCGTTAAATCATTTGCTCGTATCCACGAAACCAATCTCAAGAAACAAGGTATCTTAC CATTAACCTTTGCTAACCCATCNTGATTACGATAAAATCTCTGGTGACGATCGTATTTCA ATCATTGGTCTCAAAGATCTTGCCCCAGGTAAACAACTCACTCTCATTGTTAAATCTGCT AAACAAGGTTCTGAATTNAAATTAAAGCAATCACACCATGAATGCGGTCAAATCGAAGGT TCAAAGCGGTTCCGCTT
Length of 3' end seq.	737
Connected seq. ID	VHN217P
Connected seq.	>VHN217P.Seq TATTTTTTTTTATATATTATATAATTAAAAAAAAAATAATTATAAAATGAACTCACTCGT TAAGGGTATTTCCAAAGTTAGGTCAACTTNATCTTTTTCAACAGTATCAATGGGTCCTCT TGAACCAAACAAGAAACTCGACTACGAAGGTATTGATGCTAAATTAAAACAATTCANACT CCATCACAACAAACCACTCACCCTTGCTGAAAAGATCATTTATGGTCATTTANAANATCC ATCAACTAAAGTTGAAAGAGGTATCACTTATCTTAAATTACATCCANATCGTGTTGCTAT GCAANATGCCACCGCACAAATGGCTGTATTACAATTTATGTCAGCTGGTTTACCANAAAC TGCAGTACCAACAACAATTCATTGNGATCATTTAATTGAAGCATATAAAGGNGGTGAAAA ANATTTANAAGTTGCAAAAGATATCAATAAAGAAGTTTACGATTTCCTTTCAACCAGTGC TAAAAAATTTGGTATGGGTTTCTGGAAGCCAGGTTCAGGTATTATCCATCAAATCGTTTT ANAAAATTATGCATTCCCAGGTGGTTTAATGATTGG----------TGATGAACTCCCAT CACGTGGTTTTGATGCCGGTGAAAACACTTACCAACCACCATCACCAAATGGTCAAAACA TTAACGTTATCGTTGATTCAGAAAGCAGCAGATTACAATTACTCCAACCATTTGCCCCAT GGGATAAGAAAGATTTAGTCGATATGCAAGTTCTCATCAAGGTTCAAGGTAAATGTACCA CCGATCACATCTCTATGGCTGGTCCATGGTTGAAATACAGAGGTCATTTGGATAACATTT CCAACAATATGTTAATTGGTGCTATCAACTCTGAAAACGGTAAAGCCAACGCTGTTCTCA ATCAATTCACTGGTGAAATCGGTCCAGTCCCAACCGTCGCTCGTGACTACAAGAAACGTG GTGTCAATTGGATCGTCGTTGGTGATGAAAACTATGGTGAAGGTTCATCTCGTGAACATG CTGCCCTCGAACCACGTCATCTCGGTGGTAAAGCTATCCTCGTTAAATCATTTGCTCGTA TCCACGAAACCAATCTCAAGAAACAAGGTATCTTACCATTAACCTTTGCTAACCCATCNT GATTACGATAAAATCTCTGGTGACGATCGTATTTCAATCATTGGTCTCAAAGATCTTGCC CCAGGTAAACAACTCACTCTCATTGTTAAATCTGCTAAACAAGGTTCTGAATTNAAATTA AAGCAATCACACCATGAATGCGGTCAAATCGAAGGTTCAAAGCGGTTCCGCTT
Length of connected seq.	1303
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas