NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHN205
Library VH
(Link to library)
Clone ID VHN205
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16579-1
Original site URL
Representative seq. ID VHN205P
(Link to Original site)
Representative DNA sequence 
>VHN205 (VHN205Q) /CSM/VH/VHN2-A/VHN205Q.Seq.d/
ATTTTAAAATAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTG
GTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCAC
TAATAGATACCACAAAAGGTGTTANGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGT
CGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGG
ATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAAC
GTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTT
TAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGT
GGGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGT
TAACTCTCTCTAATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACT
AGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGAATGGGATAT
TAGGGTAACCGATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTTATCTTTTCT
XXXXXXXXXXCCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAGCGACGCTGCT
TTTTGATCNTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCACAAAGTGTTGG
ATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGT
TTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGAGGAACT
GTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCAT
CCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAAT
GCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACT
TTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTG
GCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAA
TGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCA
TTAGTTCTTTCTTGTATAAACGATTAAGAATAAACTAATAATAAAATGTTTAGTTTTTTA
AAGAAACCTACTCCAGAGGAGTTAGTAAAGAAAGGAAAAGAGAATTAAGAAGAGAAGATA
GAGGTTAGAACTCAATTAAGAGCAA
sequence update 2002.10.25
Translated Amino Acid sequence 
f*nklhmcnek*ellvghfw*aelamwvepnigirrltftnryhkrcxvh*dsrtvamev
gir*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvf
sadldgsskyskeftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltl
vtl*aereag*NSCTIEWDIRVTDRNPGHQLAVEEELSF---

---TGITGLWQPSAHSDAAF*sfdvgssyhceaeftkcwivhpltrnvswv*tvvrqvsf
tlllsivcviva*fstrgtvmpdhwsvglfdkivtcryhpldng*tplsqnpf*krkpna
lececcr*h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrstlrl*ttik*
trccklpssvqlrgveafplvlscind*e*tnnkmfsflkkptpeelvkkgken*eekie
vrtqlra
Translated Amino Acid sequence (All Frames) 
Frame A:
ilk*iahvq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlxslrqqdgghgs
ryplrsv*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefewscl
*crs*w**qifkriyfegrsgegfhnngihlwvsrs*glg*lslirllghwieseggfnt
sdfigrkgsglkflhhrmgy*gnrs*sgtsiggrgrvifs---

---pqg*lacgsqaliatllfdxsmsalliivkqnsqsvglfth*qgt*agfrps*drlv
lpyccqlfa***hdlvreelscritgl*vyltk**paatirwimaerl*vrihsrnanqm
l*svnvvgnirllvgdhfql*ti*liavtlqfpsgycggwlnsnlyprsaqlfdcrrlsn
elgavsfrvafsyeglrlfh*fflv*tiknkliikclvf*rnllqrs**rkekrikkrr*
rleln*eq

Frame B:
f*nklhmcnek*ellvghfw*aelamwvepnigirrltftnryhkrcxvh*dsrtvamev
gir*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvf
sadldgsskyskeftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltl
vtl*aereag*NSCTIEWDIRVTDRNPGHQLAVEEELSF---

---hrdnwlvaakrs*rrcflixrcrlflsl*srihkvldcsptnkerelgldrretg*f
yptvvnclrnssmi*yernchagslvcrfi*qnsdlplpsvg*wlnasksesiletqtkc
frv*ml*vtlgcwwgttfnfkpyd*sllhcsflpvivvgg*iliyilvplnssivddyqm
n*vl*ase*rsvtrg*gfsissflykrlrin***nv*ffketysrgvskerkrelrredr
g*nsiks

Frame C:
fkinctcamknrss*waifgkqnwrcglnqilg*dv*hslidttkgvxfiktagrwpwks
vsakecvtthlpnglalkmddassgwsmpnr*kk**yf*rvgrregnvea*m*irvelsl
vqilmvvaniqknll*rpkwgrvp*qwnslmgesilrfgltlsnkvtrsldrk*rwl*h*
*lyrpkgkrvkipapsngilg*pivirdinwrsrksylf---

---TGITGLWQPSAHSDAAF*sfdvgssyhceaeftkcwivhpltrnvswv*tvvrqvsf
tlllsivcviva*fstrgtvmpdhwsvglfdkivtcryhpldng*tplsqnpf*krkpna
lececcr*h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrstlrl*ttik*
trccklpssvqlrgveafplvlscind*e*tnnkmfsflkkptpeelvkkgken*eekie
vrtqlra
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHN205 (VHN205Q) /CSM/VH/VHN2-A/VHN205Q.Seq.d/                       2714   0.0
VHG394 (VHG394Q) /CSM/VH/VHG3-D/VHG394Q.Seq.d/                       1279   0.0
SHE483 (SHE483Q) /CSM/SH/SHE4-D/SHE483Q.Seq.d/                       1275   0.0
VHP355 (VHP355Q) /CSM/VH/VHP3-C/VHP355Q.Seq.d/                       1273   0.0
VHM465 (VHM465Q) /CSM/VH/VHM4-C/VHM465Q.Seq.d/                       1261   0.0
VHL615 (VHL615Q) /CSM/VH/VHL6-A/VHL615Q.Seq.d/                       1255   0.0
CHQ795 (CHQ795Q) /CSM/CH/CHQ7-D/CHQ795Q.Seq.d/                       1255   0.0
CHP713 (CHP713Q) /CSM/CH/CHP7-A/CHP713Q.Seq.d/                       1253   0.0
VHO324 (VHO324Q) /CSM/VH/VHO3-A/VHO324Q.Seq.d/                       1241   0.0
VHI207 (VHI207Q) /CSM/VH/VHI2-A/VHI207Q.Seq.d/                       1239   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ444668) Dictyostelium discoideum cDNA clone:ddv57i02, 3' ...  1451   0.0    1
(BJ426086) Dictyostelium discoideum cDNA clone:ddv57i02, 5' ...  1302   0.0    1
(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1195   0.0    1
(AU034938) Dictyostelium discoideum slug cDNA, clone SLE369.     1195   0.0    1
(BJ443401) Dictyostelium discoideum cDNA clone:ddv52f20, 3' ...  1181   0.0    1
(BJ438918) Dictyostelium discoideum cDNA clone:ddv38k22, 3' ...  1181   0.0    1
(BJ438901) Dictyostelium discoideum cDNA clone:ddv38g23, 3' ...  1181   0.0    1
(BJ428425) Dictyostelium discoideum cDNA clone:ddv11k24, 3' ...  1181   0.0    1
(BJ406706) Dictyostelium discoideum cDNA clone:dds36m06, 3' ...  1181   0.0    1
(BJ403693) Dictyostelium discoideum cDNA clone:dds25p20, 3' ...  1181   0.0    1
dna update 2008.12. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP...   115   3e-24
CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    49   3e-10
AY436773_1(AY436773|pid:none) Pyrus communis putative senescence...    61   1e-07
CP001575_406(CP001575|pid:none) Micromonas sp. RCC299 chromosome...    59   4e-07
U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo...    45   2e-06
AK230153_1(AK230153|pid:none) Arabidopsis thaliana mRNA for hypo...    53   2e-05
EU244380_1(EU244380|pid:none) Haliotis diversicolor clone HDr4CJ...    53   2e-05
BC114377_1(BC114377|pid:none) Homo sapiens cDNA clone MGC:134704...    50   2e-04
AL844509_690(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    42   0.070
EF192058_1(EF192058|pid:none) Trichosanthes dioica clone TDM04 p...    40   0.27
protein update 2009. 7.18
PSORT 

 psg: 0.75  gvh: 0.45  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VHN205 is cyt
5' end seq. ID VHN205F
5' end seq. 
>VHN205F.Seq
ATTTTAAAATAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTG
GTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCAC
TAATAGATACCACAAAAGGTGTTANGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGT
CGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGG
ATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAAC
GTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTT
TAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGT
GGGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGT
TAACTCTCTCTAATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACT
AGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGAATGGGATAT
TAGGGTAACCGATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTTATCTTTTCT
NNNNNNNNNN
Length of 5' end seq. 670
3' end seq. ID VHN205Z
3' end seq. 
>VHN205Z.Seq
NNNNNNNNNNCCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAGCGACGCTGCT
TTTTGATCNTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCACAAAGTGTTGG
ATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGT
TTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGAGGAACT
GTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCAT
CCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAAT
GCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACT
TTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTG
GCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAA
TGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCA
TTAGTTCTTTCTTGTATAAACGATTAAGAATAAACTAATAATAAAATGTTTAGTTTTTTA
AAGAAACCTACTCCAGAGGAGTTAGTAAAGAAAGGAAAAGAGAATTAAGAAGAGAAGATA
GAGGTTAGAACTCAATTAAGAGCAA
Length of 3' end seq. 745
Connected seq. ID VHN205P
Connected seq. 
>VHN205P.Seq
ATTTTAAAATAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTG
GTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCAC
TAATAGATACCACAAAAGGTGTTANGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGT
CGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGG
ATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAAC
GTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTT
TAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGT
GGGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGT
TAACTCTCTCTAATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACT
AGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGAATGGGATAT
TAGGGTAACCGATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTTATCTTTTCT
----------CCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAGCGACGCTGCT
TTTTGATCNTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCACAAAGTGTTGG
ATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGT
TTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGAGGAACT
GTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCAT
CCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAAT
GCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACT
TTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTG
GCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAA
TGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCA
TTAGTTCTTTCTTGTATAAACGATTAAGAATAAACTAATAATAAAATGTTTAGTTTTTTA
AAGAAACCTACTCCAGAGGAGTTAGTAAAGAAAGGAAAAGAGAATTAAGAAGAGAAGATA
GAGGTTAGAACTCAATTAAGAGCAA
Length of connected seq. 1395
Full length Seq ID -
Full length Seq. -
Length of full length seq. -