VHN201
Library VH
(Link to library)
Clone ID VHN201
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15722-1
Original site URL
Representative seq. ID VHN201P
(Link to Original site)
Representative DNA sequence
>VHN201 (VHN201Q) /CSM/VH/VHN2-A/VHN201Q.Seq.d/
AAAAAAACACACCAAAATTAAATAAGTAAGAATAAAAATGAAATATTTATTAGTATATTT
ACACATATTACTATTTTGTTTATTAAAGATCAATAGCCAAAAGTATTGCACTTATAGTGG
TGTTGGAGAAGATTATAATATCAAATTTGATGTCTTACAAACAAATGGTGGTATTGGTTT
TCTATACTCATATTTAAGTGTTATTTTTACAACTTGTAATTATACTATTCCTTGTGGTAG
TAATAGTAATAATGTATTGTGTGGATCATATCATTCAACTGTTCCACGCAAGTATCTTTC
ATTGGGATTTGTTAATGGCAGTACACATAGTTATAGCAAAGACGGACTAATGATAACATA
TATATCACAGGATACAACAAATGATAATGATTGCAAAAGATATACAACAAATGTGATTTT
TCAATGTAGACCAGATGGTGATGTATCCGATTCATTAGATGTTGGCATCGACAATATACT
TATTGATTCATGTATTGTTGAATTCACACTCTATTTACGTACAGTGTGTCAAACATGTCC
AAACTGTTTAAAAACACATCAAACATCATGTAGTGTGAAAAGTGGTTGGTGTACTTGTGA
TGGTAATACAAAANGTTTAAATTGTGATCAATTAAATGCAAATATATCATCGGTATXXXX
XXXXXXATGTCCANTCAATNGTCGACNCCAAAAGGNACCTGTGATAATAANACTGGAANT
GNACATGCCNATAATGAACATTTTGGTAATGGTTGTGAATTTACTCGATGTCCACTCGAT
TGTTCGACACCAAAATGGTACTTGTGATAATAATACTGGTAATTGTACATGCCCATAATG
AACATTTTGGTAATTCTTGTGAATTTACTCGATGTCCACTCGATTGTTCGACACCAAATG
GTACTTGTGATAATAATACTGGTAATTGTACATGCCATAATGAACATTTTGGTAATGGTT
GTGAATTCACTCAATGCCCACTCTATTGTTCAACACCAAATGGTACTTGTGATATTAATA
GTGGTATTTGTACATGTGATAATGAACATATTGGTAATGGTTGCGAAATTAAATTTATTG
AATGTAAACATAAATGTTCAACCAAACATGGAATATGTGATAATGATAGTGGTAATTGTA
AATGTGATACTCAAACAAAAGGATTAACGTGTGAAGAATCAAGATTATTAATTGAATCAT
TAGACTCAATCAATTCAAAAGGTGGTACAATAAATATAATTGGTTATTTTGGAAATACAA
CATCATTATTAACAATTAAAATTGGTGAATCACAATGTAAAAATATCAAAGTATTCAATG
AAACAACATTAAAATGTGATATTGGTGAAGGTAAAGGTATTCATAATATTACAATCATTG
ATGATGACCTTTCGTTCACAGCAATCAATAAGTTCCAATATCTCGATGAAAAAACAAAAA
TCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTGTTGGTTGTGTTGTTGCTGTTT
CATTAATTGGTTCTATTGCTTTTTATTATCATCACAAAAATAAAAAGGTTATCTTTTCTT
CTAAAAACTA
sequence update 2002.10.25
Translated Amino Acid sequence
kkhtkik*VRIKMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYNIKFDVLQTNGGIGF
LYSYLSVIFTTCNYTIPCGSNSNNVLCGSYHSTVPRKYLSLGFVNGSTHSYSKDGLMITY
ISQDTTNDNDCKRYTTNVIFQCRPDGDVSDSLDVGIDNILIDSCIVEFTLYLRTVCQTCP
NCLKTHQTSCSVKSGWCTCDGNTKXLNCDQLNANISSV---

---CPXNXRXQKXPVIIXLEXXMPIMNILVMVVNLLDVHSIVRHQNGTCDNNTGNCTCP*
*tfw*fl*iysmstrlfdtkwyl***yw*lymp**tfw*wl*ihsmptllfntkwyl*y*
*wylym***tyw*wlrn*iy*m*t*mfnqtwnm****w*l*m*ysnkrinv*rikiin*i
irlnqfkrwynkynwlfwkyniiinn*nw*itm*kyqsiq*nnikm*yw*r*rys*yynh
***pfvhsnq*vpisr*knknlkniercncwyccwlccccfinwfycfllssqk*kgylf
f*kl


Translated Amino Acid sequence (All Frames)
Frame A:
kkthqn*isknkneifisifthitilfikdq*pkvlhl*wcwrrl*yqi*cltnkwwywf
silifkcyfynl*lyyslw*****civwiisfncstqvsfigic*wqyt*l*qrrtndni
yitgynk***lqkiynkcdfsm*trw*cirfircwhrqyty*fmyc*ihtlftysvsnms
klfkntsnim*cekwlvyl*w*ykxfkl*sikckyiig---

---msxqxstpkgtcdnxtgxxhaxnehfgngceftrcpldcstpkwyl***yw*lympi
mnilvilvnlldvhsivrhqmvlviiilvivhaimnilvmvvnslnahsivqhqmvlvil
ivvfvhvimnilvmvaklnllnvninvqpnmeyvimivvivnvilkqkd*rvknqdy*ln
h*tqsiqkvvq*i*lvileiqhhy*qlklvnhnvkiskysmkqh*nvilvkvkvfiilqs
lmmtfrsqqsissnismkkqksqkyrevqllvlllvvlllfh*lvlllfiiitkikrlsf
llkt

Frame B:
kkhtkik*VRIKMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYNIKFDVLQTNGGIGF
LYSYLSVIFTTCNYTIPCGSNSNNVLCGSYHSTVPRKYLSLGFVNGSTHSYSKDGLMITY
ISQDTTNDNDCKRYTTNVIFQCRPDGDVSDSLDVGIDNILIDSCIVEFTLYLRTVCQTCP
NCLKTHQTSCSVKSGWCTCDGNTKXLNCDQLNANISSV---

---CPXNXRXQKXPVIIXLEXXMPIMNILVMVVNLLDVHSIVRHQNGTCDNNTGNCTCP*
*tfw*fl*iysmstrlfdtkwyl***yw*lymp**tfw*wl*ihsmptllfntkwyl*y*
*wylym***tyw*wlrn*iy*m*t*mfnqtwnm****w*l*m*ysnkrinv*rikiin*i
irlnqfkrwynkynwlfwkyniiinn*nw*itm*kyqsiq*nnikm*yw*r*rys*yynh
***pfvhsnq*vpisr*knknlkniercncwyccwlccccfinwfycfllssqk*kgylf
f*kl

Frame C:
kntpklnk*e*k*niy*yiytyyyfvy*rsiaksialivvlekiiisnlmsykqmvvlvf
ythi*vlflqlviilflvvvivimycvdhiiqlfhasifhwdllmavhiviaktd***hi
yhriqqmimiakdiqqm*ffnvdqmvmypih*mlastiyllihvllnshsiyvqcvkhvq
tv*khikhhvv*kvvgvlvmviqxv*ivin*mqiyhry---

---vxsxvdxkrxl***xwxxtcx**tfw*wl*iysmstrlfdtkmvlviiilvivhahn
ehfgnsceftrcpldcstpngtcdnntgnctchnehfgngceftqcplycstpngtcdin
sgictcdnehigngceikfieckhkcstkhgicdndsgnckcdtqtkgltceesrllies
ldsinskggtiniigyfgnttslltikigesqcknikvfnettlkcdigegkgihnitii
dddlsftainkfqyldektkiskisrgaiagivvgcvvavsligsiafyyhhknkkvifs
skn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHN201 (VHN201Q) /CSM/VH/VHN2-A/VHN201Q.Seq.d/ 2704 0.0
VHA768 (VHA768Q) /CSM/VH/VHA7-C/VHA768Q.Seq.d/ 1392 0.0
VHO292 (VHO292Q) /CSM/VH/VHO2-D/VHO292Q.Seq.d/ 1386 0.0
AHH863 (AHH863Q) /CSM/AH/AHH8-C/AHH863Q.Seq.d/ 1380 0.0
VHQ143 (VHQ143Q) /CSM/VH/VHQ1-B/VHQ143Q.Seq.d/ 1374 0.0
VHM648 (VHM648Q) /CSM/VH/VHM6-B/VHM648Q.Seq.d/ 1372 0.0
VHP265 (VHP265Q) /CSM/VH/VHP2-C/VHP265Q.Seq.d/ 1368 0.0
VHO766 (VHO766Q) /CSM/VH/VHO7-C/VHO766Q.Seq.d/ 1368 0.0
VHI141 (VHI141Q) /CSM/VH/VHI1-B/VHI141Q.Seq.d/ 1368 0.0
VHD304 (VHD304Q) /CSM/VH/VHD3-A/VHD304Q.Seq.d/ 1368 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ444630) Dictyostelium discoideum cDNA clone:ddv57a02, 3' ... 1463 0.0 2
(BJ375505) Dictyostelium discoideum cDNA clone:ddc19a02, 3' ... 1350 0.0 2
(BJ426052) Dictyostelium discoideum cDNA clone:ddv57a02, 5' ... 1281 0.0 1
(BJ366156) Dictyostelium discoideum cDNA clone:ddc37p22, 5' ... 1271 0.0 1
(BJ441375) Dictyostelium discoideum cDNA clone:ddv46c17, 3' ... 1257 0.0 4
(BJ426670) Dictyostelium discoideum cDNA clone:ddv59g24, 5' ... 1251 0.0 1
(BJ418387) Dictyostelium discoideum cDNA clone:ddv32h17, 5' ... 1235 0.0 1
(BJ425697) Dictyostelium discoideum cDNA clone:ddv56f16, 5' ... 1215 0.0 1
(BJ422548) Dictyostelium discoideum cDNA clone:ddv46e07, 5' ... 1187 0.0 1
(BJ427338) Dictyostelium discoideum cDNA clone:ddv62h05, 5' ... 1185 0.0 1
dna update 2008.12. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso... 125 3e-27
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom... 108 4e-22
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso... 97 2e-18
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom... 95 6e-18
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso... 94 2e-17
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso... 92 4e-17
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso... 90 2e-16
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom... 90 2e-16
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso... 89 6e-16
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso... 86 4e-15
protein update 2009. 7.18
PSORT

psg: 0.93 gvh: 0.70 alm: 0.32 top: 0.40 tms: 0.07 mit: 0.32 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 1.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

36.0 %: extracellular, including cell wall
32.0 %: plasma membrane
20.0 %: endoplasmic reticulum
12.0 %: Golgi

>> prediction for VHN201 is exc

5' end seq. ID VHN201F
5' end seq.
>VHN201F.Seq
AAAAAAACACACCAAAATTAAATAAGTAAGAATAAAAATGAAATATTTATTAGTATATTT
ACACATATTACTATTTTGTTTATTAAAGATCAATAGCCAAAAGTATTGCACTTATAGTGG
TGTTGGAGAAGATTATAATATCAAATTTGATGTCTTACAAACAAATGGTGGTATTGGTTT
TCTATACTCATATTTAAGTGTTATTTTTACAACTTGTAATTATACTATTCCTTGTGGTAG
TAATAGTAATAATGTATTGTGTGGATCATATCATTCAACTGTTCCACGCAAGTATCTTTC
ATTGGGATTTGTTAATGGCAGTACACATAGTTATAGCAAAGACGGACTAATGATAACATA
TATATCACAGGATACAACAAATGATAATGATTGCAAAAGATATACAACAAATGTGATTTT
TCAATGTAGACCAGATGGTGATGTATCCGATTCATTAGATGTTGGCATCGACAATATACT
TATTGATTCATGTATTGTTGAATTCACACTCTATTTACGTACAGTGTGTCAAACATGTCC
AAACTGTTTAAAAACACATCAAACATCATGTAGTGTGAAAAGTGGTTGGTGTACTTGTGA
TGGTAATACAAAANGTTTAAATTGTGATCAATTAAATGCAAATATATCATCGGTATNNNN
NNNNNN
Length of 5' end seq. 666
3' end seq. ID VHN201Z
3' end seq.
>VHN201Z.Seq
NNNNNNNNNNATGTCCANTCAATNGTCGACNCCAAAAGGNACCTGTGATAATAANACTGG
AANTGNACATGCCNATAATGAACATTTTGGTAATGGTTGTGAATTTACTCGATGTCCACT
CGATTGTTCGACACCAAAATGGTACTTGTGATAATAATACTGGTAATTGTACATGCCCAT
AATGAACATTTTGGTAATTCTTGTGAATTTACTCGATGTCCACTCGATTGTTCGACACCA
AATGGTACTTGTGATAATAATACTGGTAATTGTACATGCCATAATGAACATTTTGGTAAT
GGTTGTGAATTCACTCAATGCCCACTCTATTGTTCAACACCAAATGGTACTTGTGATATT
AATAGTGGTATTTGTACATGTGATAATGAACATATTGGTAATGGTTGCGAAATTAAATTT
ATTGAATGTAAACATAAATGTTCAACCAAACATGGAATATGTGATAATGATAGTGGTAAT
TGTAAATGTGATACTCAAACAAAAGGATTAACGTGTGAAGAATCAAGATTATTAATTGAA
TCATTAGACTCAATCAATTCAAAAGGTGGTACAATAAATATAATTGGTTATTTTGGAAAT
ACAACATCATTATTAACAATTAAAATTGGTGAATCACAATGTAAAAATATCAAAGTATTC
AATGAAACAACATTAAAATGTGATATTGGTGAAGGTAAAGGTATTCATAATATTACAATC
ATTGATGATGACCTTTCGTTCACAGCAATCAATAAGTTCCAATATCTCGATGAAAAAACA
AAAATCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTGTTGGTTGTGTTGTTGCT
GTTTCATTAATTGGTTCTATTGCTTTTTATTATCATCACAAAAATAAAAAGGTTATCTTT
TCTTCTAAAAACTA
Length of 3' end seq. 914
Connected seq. ID VHN201P
Connected seq.
>VHN201P.Seq
AAAAAAACACACCAAAATTAAATAAGTAAGAATAAAAATGAAATATTTATTAGTATATTT
ACACATATTACTATTTTGTTTATTAAAGATCAATAGCCAAAAGTATTGCACTTATAGTGG
TGTTGGAGAAGATTATAATATCAAATTTGATGTCTTACAAACAAATGGTGGTATTGGTTT
TCTATACTCATATTTAAGTGTTATTTTTACAACTTGTAATTATACTATTCCTTGTGGTAG
TAATAGTAATAATGTATTGTGTGGATCATATCATTCAACTGTTCCACGCAAGTATCTTTC
ATTGGGATTTGTTAATGGCAGTACACATAGTTATAGCAAAGACGGACTAATGATAACATA
TATATCACAGGATACAACAAATGATAATGATTGCAAAAGATATACAACAAATGTGATTTT
TCAATGTAGACCAGATGGTGATGTATCCGATTCATTAGATGTTGGCATCGACAATATACT
TATTGATTCATGTATTGTTGAATTCACACTCTATTTACGTACAGTGTGTCAAACATGTCC
AAACTGTTTAAAAACACATCAAACATCATGTAGTGTGAAAAGTGGTTGGTGTACTTGTGA
TGGTAATACAAAANGTTTAAATTGTGATCAATTAAATGCAAATATATCATCGGTAT----
------ATGTCCANTCAATNGTCGACNCCAAAAGGNACCTGTGATAATAANACTGGAANT
GNACATGCCNATAATGAACATTTTGGTAATGGTTGTGAATTTACTCGATGTCCACTCGAT
TGTTCGACACCAAAATGGTACTTGTGATAATAATACTGGTAATTGTACATGCCCATAATG
AACATTTTGGTAATTCTTGTGAATTTACTCGATGTCCACTCGATTGTTCGACACCAAATG
GTACTTGTGATAATAATACTGGTAATTGTACATGCCATAATGAACATTTTGGTAATGGTT
GTGAATTCACTCAATGCCCACTCTATTGTTCAACACCAAATGGTACTTGTGATATTAATA
GTGGTATTTGTACATGTGATAATGAACATATTGGTAATGGTTGCGAAATTAAATTTATTG
AATGTAAACATAAATGTTCAACCAAACATGGAATATGTGATAATGATAGTGGTAATTGTA
AATGTGATACTCAAACAAAAGGATTAACGTGTGAAGAATCAAGATTATTAATTGAATCAT
TAGACTCAATCAATTCAAAAGGTGGTACAATAAATATAATTGGTTATTTTGGAAATACAA
CATCATTATTAACAATTAAAATTGGTGAATCACAATGTAAAAATATCAAAGTATTCAATG
AAACAACATTAAAATGTGATATTGGTGAAGGTAAAGGTATTCATAATATTACAATCATTG
ATGATGACCTTTCGTTCACAGCAATCAATAAGTTCCAATATCTCGATGAAAAAACAAAAA
TCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTGTTGGTTGTGTTGTTGCTGTTT
CATTAATTGGTTCTATTGCTTTTTATTATCATCACAAAAATAAAAAGGTTATCTTTTCTT
CTAAAAACTA
Length of connected seq. 1560
Full length Seq ID -
Full length Seq. -
Length of full length seq. -