>VHN168 (VHN168Q) /CSM/VH/VHN1-C/VHN168Q.Seq.d/
XXXXXXXXXXATTGTCCAATCCCATCCAGCTCAAGAATATCAATTTGTTCCAAAAACTCT
CCCACATCAAAGTCAACGAGTACATTCATTATCAATGGACAGGTTGTGATTTCAATCCAC
AAAACTATGATGGTACTGGTATCAAAGGTTCTGATCGTAGCAACATGTGTCAAATTAAAA
CACTCAATCACAATTACCCAATGACCGACGATGAACTCAACGATGACAATGCCTTATTTG
CCGATATGGAAACTAGACTTAGATTCGCTAGACTTGGCCAAAAGAGTTGTTTAACCTATG
ATGAACTCATGACTAAAAACAATAACAACAAAGATGCC

---LSNPIQLKNINLFQKLSHIKVNEYIHYQWTGCDFNPQNYDGTGIKGSDRSNMCQIKT
LNHNYPMTDDELNDDNALFADMETRLRFARLGQKSCLTYDELMTKNNNNKDA

Frame A:
---LSNPIQLKNINLFQKLSHIKVNEYIHYQWTGCDFNPQNYDGTGIKGSDRSNMCQIKT
LNHNYPMTDDELNDDNALFADMETRLRFARLGQKSCLTYDELMTKNNNNKDA


Frame B:
---cpipsssrisicsknsptskststfiingqvvisihktmmvlvskvlivatcvklkh
sititq*ptmnstmtmpylpiwkldldsldlakrvv*pmmns*lktittkm


Frame C:
---vqshpaqeyqfvpktlphqsqrvhslsmdrl*fqstkl*wywyqrf*s*qhvsn*nt
qsqlpndrr*tqr*qclicrygn*t*ir*twpkelfnl**thd*kq*qqrc

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHN168 (VHN168Q) /CSM/VH/VHN1-C/VHN168Q.Seq.d/                        650   0.0
VHP893 (VHP893Q) /CSM/VH/VHP8-D/VHP893Q.Seq.d/                        634   0.0
VHN511 (VHN511Q) /CSM/VH/VHN5-A/VHN511Q.Seq.d/                        634   0.0
VHN383 (VHN383Q) /CSM/VH/VHN3-D/VHN383Q.Seq.d/                        634   0.0
VHC531 (VHC531Q) /CSM/VH/VHC5-B/VHC531Q.Seq.d/                        634   0.0
VHB849 (VHB849Q) /CSM/VH/VHB8-C/VHB849Q.Seq.d/                        634   0.0
VFI267 (VFI267Q) /CSM/VF/VFI2-C/VFI267Q.Seq.d/                        634   0.0
SLH577 (SLH577Q) /CSM/SL/SLH5-D/SLH577Q.Seq.d/                        634   0.0
FC-BS21 (FC-BS21Q) /CSM/FC/FC-BS/FC-BS21Q.Seq.d/                      634   0.0
VHO526 (VHO526Q) /CSM/VH/VHO5-B/VHO526Q.Seq.d/                        632   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC012401|AC012401.4 Homo sapiens chromosome 3 clone RP11-209H21 map 3, WORKING DRAFT SEQUENCE, 4 unordered pieces.    38   0.041  5
AC131150|AC131150.8 Homo sapiens 3 BAC RP11-637J15 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    38   0.045  3
AL355363|AL355363.4 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-385K13.    34   0.13   4
AC102294|AC102294.3 Mus musculus clone RP24-383B6, WORKING DRAFT SEQUENCE, 6 unordered pieces.    42   0.15   4
AL109852|AL109852.13 Human DNA sequence from clone RP5-1178I21 on chromosome Xq27.1-27.3.    38   0.24   3
AC013315|AC013315.3 Homo sapiens chromosome 22 clone RP11-348B6 map 22, LOW-PASS SEQUENCE SAMPLING.    38   0.36   4
BX294092|BX294092.1 Neurospora crassa DNA linkage group V BAC clone B11H7.    44   1.2    1
AC107183|AC107183.5 Rattus norvegicus clone CH230-121F14, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44   1.2    1
AC125297|AC125297.3 Rattus norvegicus clone CH230-10D11, WORKING DRAFT SEQUENCE, 1 ordered piece.    44   1.2    1
AC095630|AC095630.5 Rattus norvegicus clone CH230-8J4, WORKING DRAFT SEQUENCE, 4 unordered pieces.    44   1.2    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB120173_1(AB120173|pid:none) Dictyostelium discoideum DD3-3 mRN...   202   2e-56
CP000777_1280(CP000777|pid:none) Leptospira biflexa serovar Pato...    34   1.8
FN357550_5(FN357550|pid:none) Schistosoma mansoni genome sequenc...    33   2.4
AK341542_1(AK341542|pid:none) Acyrthosiphon pisum ACYPI006346 mR...    32   5.4

 psg: 0.65  gvh: 0.13  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial

>> prediction for VHN168 is nuc

>VHN168Z.Seq
NNNNNNNNNNATTGTCCAATCCCATCCAGCTCAAGAATATCAATTTGTTCCAAAAACTCT
CCCACATCAAAGTCAACGAGTACATTCATTATCAATGGACAGGTTGTGATTTCAATCCAC
AAAACTATGATGGTACTGGTATCAAAGGTTCTGATCGTAGCAACATGTGTCAAATTAAAA
CACTCAATCACAATTACCCAATGACCGACGATGAACTCAACGATGACAATGCCTTATTTG
CCGATATGGAAACTAGACTTAGATTCGCTAGACTTGGCCAAAAGAGTTGTTTAACCTATG
ATGAACTCATGACTAAAAACAATAACAACAAAGATGCC