VHN149
Library VH
(Link to library)
Clone ID VHN149
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15962-1
Original site URL
Representative seq. ID VHN149P
(Link to Original site)
Representative DNA sequence
>VHN149 (VHN149Q) /CSM/VH/VHN1-C/VHN149Q.Seq.d/
AATAATAATTTAGTAAAGTAATAAAATGAGTTTTATTGATCAAATCCCAAAAAGTTTTAT
TCCAAAGTTAGATGACTTTAGAAATAAATTAAAACCACTCGAAGGTTCAGTTGATTATTG
TCCAAAGGCTTGGTTTTTAGGTCCAAAAGCAGAAAATTCTGAATTATTAATGACTCTCCT
CAAAAGAGCAATTGATGCTCATCTTCAATCAAGAATCAATTTCCACAAAGAAGATGCACC
AATTTTCGAAGATTCTTACAAAAAAGATCCTGTATACCTCAATGCAGCAAAAGACATGAC
CAAAAAAGTTGATGAAGTTTTAAATTTCTTAAAACACTCTCTTCCATATTCATCCTTTAG
ATATCAAGGACATATGACATCTGATGTTACTATTGCTGGTGTAATTGGTGCCACTGCTAC
TATTTTATACAATCCAAACAATGTAACAGTTCAAGCAAGTCCAGTAACCACATTTATTGA
AATGGCAGTTAGTAATGATCTTGCCCGTATGGTTTGGTTGGGXXXXXXXXXXTTTGAGCC
ATTCAATTATGCGTACATCAAAATCTGGTTATGGTATGATCTTAAAGAGATGTTTATTAA
GTACAAGACTCTTCTACTTGAGATTATTATGGTTATGTGGTGATAATGATCAATTCAAAG
TTGTTGGTGTACCAATTGAACCATCTAAGGAAACCCTCGATAATCTCAAATCAAGATTAT
ACGATGCCAATGGTCAAATGAAGAGTGTTGATACAATTTGTCAAGATCAACAACTCGTCG
TTGATTTAGCTGAAGTTGGACCAGATCAAAATATCGTTTGTTTTGGTATTAATTTCAAGG
ATGCCAATGGTAAGTGGAATACTGATTACAACAAATACTGTGATGTTAATAATCAAATCT
ATGAAAGATTTGATTATAAAAAAGAAGTTGGTATGGCTCAATTTGATTTAATTTTCTCAA
ATACCGCTTTCAACGATCAGTATGGTCAAGTATTCCAACAAAGTCTTGCCCAAAGATTTG
GTCTCACTACCAATGTTCCAGCTTTTGGTAGTAATAAATTCCAATTACCAGTTTTAAGAT
CAACTGTTATGGATGTCTTTGCTAACGAAACCACTAAAGGTTCATTCTTTGATGTTACAA
TGCCATTGTTCAAATCAGAATGCGCTAAAATTGTTGCTGCATTTGTTAACGCTTCCAAGG
CTTCAAAACCAACTCTTTAATTTTAAATTAATCAAAAAATAAAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence
iii**SNKMSFIDQIPKSFIPKLDDFRNKLKPLEGSVDYCPKAWFLGPKAENSELLMTLL
KRAIDAHLQSRINFHKEDAPIFEDSYKKDPVYLNAAKDMTKKVDEVLNFLKHSLPYSSFR
YQGHMTSDVTIAGVIGATATILYNPNNVTVQASPVTTFIEMAVSNDLARMVWL---

---LSHSIMRTSKSGYGMILKRCLLSTRLFYLRLLWLCGDNDQFKVVGVPIEPSKETLDN
LKSRLYDANGQMKSVDTICQDQQLVVDLAEVGPDQNIVCFGINFKDANGKWNTDYNKYCD
VNNQIYERFDYKKEVGMAQFDLIFSNTAFNDQYGQVFQQSLAQRFGLTTNVPAFGSNKFQ
LPVLRSTVMDVFANETTKGSFFDVTMPLFKSECAKIVAAFVNASKASKPTL*f*inqkik
n


Translated Amino Acid sequence (All Frames)
Frame A:
nnnlvk**nefy*snpkkfyskvr*l*k*ikttrrfs*llskglvfrsksrkf*iindsp
qksn*csssiknqfpqrrctnfrrflqkrscipqcskrhdqks**sfkflktlssifil*
isrtydi*cyycwcnwchcyyfiqskqcnssskssnhiy*ngs***scpyglvg---

---fepfnyayikiwlwydlkemfikyktllleiimvmw***siqscwctn*ti*gnpr*
sqikiircqwsneec*ynlsrsttrr*fs*swtrskyrlfwy*fqgcqw*vey*lqqil*
c**snl*ki*l*krswygsi*fnflkyrfqrsvwssiptkscpkiwshyqcssfw***ip
itsfkincygclc*rnh*rfil*cynaivqirmr*ncccic*rfqgfktnsliln*sknk
k

Frame B:
iii**SNKMSFIDQIPKSFIPKLDDFRNKLKPLEGSVDYCPKAWFLGPKAENSELLMTLL
KRAIDAHLQSRINFHKEDAPIFEDSYKKDPVYLNAAKDMTKKVDEVLNFLKHSLPYSSFR
YQGHMTSDVTIAGVIGATATILYNPNNVTVQASPVTTFIEMAVSNDLARMVWL---

---LSHSIMRTSKSGYGMILKRCLLSTRLFYLRLLWLCGDNDQFKVVGVPIEPSKETLDN
LKSRLYDANGQMKSVDTICQDQQLVVDLAEVGPDQNIVCFGINFKDANGKWNTDYNKYCD
VNNQIYERFDYKKEVGMAQFDLIFSNTAFNDQYGQVFQQSLAQRFGLTTNVPAFGSNKFQ
LPVLRSTVMDVFANETTKGSFFDVTMPLFKSECAKIVAAFVNASKASKPTL*f*inqkik
n

Frame C:
**fskvik*vlliksqkvlfqs*mtlein*nhskvqliivqrlgf*vqkqkilny**lss
keqlmlifnqesistkkmhqfskiltkkilytsmqqkt*pkklmkf*is*ntlfhihpld
ikdi*hlmllllv*lvplllfytiqtm*qfkqvq*phllkwqlvmilpvwfgw---

---*aiqlcvhqnlvmv*s*rdvy*vqdsst*dyygyvviminskllvyqlnhlrkpsii
snqdytmpmvk*rvliqfvkinnssli*lkldqikisfvlvlisrmpmvsgilittntvm
liiksmkdliikkklvwlnli*fsqiplstismvkysnkvlpkdlvslpmfqllvvinsn
yqf*dqllwmslltkplkvhslmlqchcsnqnalklllhlltlprlqnqlfnfklikk*k
i

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHN149 (VHN149Q) /CSM/VH/VHN1-C/VHN149Q.Seq.d/ 2385 0.0
VHL512 (VHL512Q) /CSM/VH/VHL5-A/VHL512Q.Seq.d/ 1376 0.0
VHL430 (VHL430Q) /CSM/VH/VHL4-B/VHL430Q.Seq.d/ 1376 0.0
VHQ102 (VHQ102Q) /CSM/VH/VHQ1-A/VHQ102Q.Seq.d/ 1368 0.0
VHP496 (VHP496Q) /CSM/VH/VHP4-D/VHP496Q.Seq.d/ 1368 0.0
VHO479 (VHO479Q) /CSM/VH/VHO4-D/VHO479Q.Seq.d/ 1368 0.0
VHM685 (VHM685Q) /CSM/VH/VHM6-D/VHM685Q.Seq.d/ 1368 0.0
VHD271 (VHD271Q) /CSM/VH/VHD2-C/VHD271Q.Seq.d/ 1368 0.0
VHI345 (VHI345Q) /CSM/VH/VHI3-B/VHI345Q.Seq.d/ 1360 0.0
VHB349 (VHB349Q) /CSM/VH/VHB3-C/VHB349Q.Seq.d/ 1360 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ444794) Dictyostelium discoideum cDNA clone:ddv57a13, 3' ... 1390 0.0 1
(BJ443772) Dictyostelium discoideum cDNA clone:ddv54g03, 3' ... 1376 0.0 1
(BJ443582) Dictyostelium discoideum cDNA clone:ddv53l08, 3' ... 1376 0.0 1
(BJ445580) Dictyostelium discoideum cDNA clone:ddv59n20, 3' ... 1368 0.0 1
(BJ444593) Dictyostelium discoideum cDNA clone:ddv56i22, 3' ... 1368 0.0 1
(BJ446531) Dictyostelium discoideum cDNA clone:ddv63c01, 3' ... 1364 0.0 1
(BJ446197) Dictyostelium discoideum cDNA clone:ddv61p24, 3' ... 1364 0.0 1
(BJ438356) Dictyostelium discoideum cDNA clone:ddv37m18, 3' ... 1364 0.0 1
(BJ441643) Dictyostelium discoideum cDNA clone:ddv47j11, 3' ... 1356 0.0 1
(BJ437191) Dictyostelium discoideum cDNA clone:ddv33b13, 3' ... 1356 0.0 1
dna update 2008.12. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000113_3785(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 116 2e-24
CP001291_2208(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 114 9e-24
CP000155_3327(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 112 3e-23
CP000559_1042(CP000559|pid:none) Methanocorpusculum labreanum Z,... 92 5e-17
AB086651_1(AB086651|pid:none) Lactobacillus curvatus tdc gene fo... 83 2e-14
AB059363_2(AB059363|pid:none) Tetragenococcus halophilus tnp, td... 82 5e-14
CP000159_814(CP000159|pid:none) Salinibacter ruber DSM 13855, co... 79 3e-13
BX571866_283(BX571866|pid:none) Photorhabdus luminescens subsp. ... 78 8e-13
AB086652_1(AB086652|pid:none) Lactobacillus curvatus tdc gene fo... 75 6e-12
AE016830_574(AE016830|pid:none) Enterococcus faecalis V583, comp... 74 1e-11
protein update 2009. 7.18
PSORT

psg: 0.73 gvh: 0.52 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: peroxisomal

>> prediction for VHN149 is cyt

5' end seq. ID VHN149F
5' end seq.
>VHN149F.Seq
AATAATAATTTAGTAAAGTAATAAAATGAGTTTTATTGATCAAATCCCAAAAAGTTTTAT
TCCAAAGTTAGATGACTTTAGAAATAAATTAAAACCACTCGAAGGTTCAGTTGATTATTG
TCCAAAGGCTTGGTTTTTAGGTCCAAAAGCAGAAAATTCTGAATTATTAATGACTCTCCT
CAAAAGAGCAATTGATGCTCATCTTCAATCAAGAATCAATTTCCACAAAGAAGATGCACC
AATTTTCGAAGATTCTTACAAAAAAGATCCTGTATACCTCAATGCAGCAAAAGACATGAC
CAAAAAAGTTGATGAAGTTTTAAATTTCTTAAAACACTCTCTTCCATATTCATCCTTTAG
ATATCAAGGACATATGACATCTGATGTTACTATTGCTGGTGTAATTGGTGCCACTGCTAC
TATTTTATACAATCCAAACAATGTAACAGTTCAAGCAAGTCCAGTAACCACATTTATTGA
AATGGCAGTTAGTAATGATCTTGCCCGTATGGTTTGGTTGGGNNNNNNNNNN
Length of 5' end seq. 532
3' end seq. ID VHN149Z
3' end seq.
>VHN149Z.Seq
NNNNNNNNNNTTTGAGCCATTCAATTATGCGTACATCAAAATCTGGTTATGGTATGATCT
TAAAGAGATGTTTATTAAGTACAAGACTCTTCTACTTGAGATTATTATGGTTATGTGGTG
ATAATGATCAATTCAAAGTTGTTGGTGTACCAATTGAACCATCTAAGGAAACCCTCGATA
ATCTCAAATCAAGATTATACGATGCCAATGGTCAAATGAAGAGTGTTGATACAATTTGTC
AAGATCAACAACTCGTCGTTGATTTAGCTGAAGTTGGACCAGATCAAAATATCGTTTGTT
TTGGTATTAATTTCAAGGATGCCAATGGTAAGTGGAATACTGATTACAACAAATACTGTG
ATGTTAATAATCAAATCTATGAAAGATTTGATTATAAAAAAGAAGTTGGTATGGCTCAAT
TTGATTTAATTTTCTCAAATACCGCTTTCAACGATCAGTATGGTCAAGTATTCCAACAAA
GTCTTGCCCAAAGATTTGGTCTCACTACCAATGTTCCAGCTTTTGGTAGTAATAAATTCC
AATTACCAGTTTTAAGATCAACTGTTATGGATGTCTTTGCTAACGAAACCACTAAAGGTT
CATTCTTTGATGTTACAATGCCATTGTTCAAATCAGAATGCGCTAAAATTGTTGCTGCAT
TTGTTAACGCTTCCAAGGCTTCAAAACCAACTCTTTAATTTTAAATTAATCAAAAAATAA
AAAATA
Length of 3' end seq. 726
Connected seq. ID VHN149P
Connected seq.
>VHN149P.Seq
AATAATAATTTAGTAAAGTAATAAAATGAGTTTTATTGATCAAATCCCAAAAAGTTTTAT
TCCAAAGTTAGATGACTTTAGAAATAAATTAAAACCACTCGAAGGTTCAGTTGATTATTG
TCCAAAGGCTTGGTTTTTAGGTCCAAAAGCAGAAAATTCTGAATTATTAATGACTCTCCT
CAAAAGAGCAATTGATGCTCATCTTCAATCAAGAATCAATTTCCACAAAGAAGATGCACC
AATTTTCGAAGATTCTTACAAAAAAGATCCTGTATACCTCAATGCAGCAAAAGACATGAC
CAAAAAAGTTGATGAAGTTTTAAATTTCTTAAAACACTCTCTTCCATATTCATCCTTTAG
ATATCAAGGACATATGACATCTGATGTTACTATTGCTGGTGTAATTGGTGCCACTGCTAC
TATTTTATACAATCCAAACAATGTAACAGTTCAAGCAAGTCCAGTAACCACATTTATTGA
AATGGCAGTTAGTAATGATCTTGCCCGTATGGTTTGGTTGGG----------TTTGAGCC
ATTCAATTATGCGTACATCAAAATCTGGTTATGGTATGATCTTAAAGAGATGTTTATTAA
GTACAAGACTCTTCTACTTGAGATTATTATGGTTATGTGGTGATAATGATCAATTCAAAG
TTGTTGGTGTACCAATTGAACCATCTAAGGAAACCCTCGATAATCTCAAATCAAGATTAT
ACGATGCCAATGGTCAAATGAAGAGTGTTGATACAATTTGTCAAGATCAACAACTCGTCG
TTGATTTAGCTGAAGTTGGACCAGATCAAAATATCGTTTGTTTTGGTATTAATTTCAAGG
ATGCCAATGGTAAGTGGAATACTGATTACAACAAATACTGTGATGTTAATAATCAAATCT
ATGAAAGATTTGATTATAAAAAAGAAGTTGGTATGGCTCAATTTGATTTAATTTTCTCAA
ATACCGCTTTCAACGATCAGTATGGTCAAGTATTCCAACAAAGTCTTGCCCAAAGATTTG
GTCTCACTACCAATGTTCCAGCTTTTGGTAGTAATAAATTCCAATTACCAGTTTTAAGAT
CAACTGTTATGGATGTCTTTGCTAACGAAACCACTAAAGGTTCATTCTTTGATGTTACAA
TGCCATTGTTCAAATCAGAATGCGCTAAAATTGTTGCTGCATTTGTTAACGCTTCCAAGG
CTTCAAAACCAACTCTTTAATTTTAAATTAATCAAAAAATAAAAAATA
Length of connected seq. 1238
Full length Seq ID -
Full length Seq. -
Length of full length seq. -