AFO633
Library AF
(Link to library)
Clone ID AFO633
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFO633P
(Link to Original site)
Representative DNA sequence
>AFO633 (AFO633Q) /CSM/AF/AFO6-B/AFO633Q.Seq.d/
AATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAAT
ACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTA
TCAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGT
GATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTT
GGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCA
GCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAG
AATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGAT
CAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGT
GCCTCAAAGAGANTTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAA
AGAAATCAACAAAGTTGAAACCGATCAATTAACTCATCAATACACTTTGGTCATTTXXXX
XXXXXXAAAGAGATCCAAGCAGGTAACCTCGCTGATGATTGGGAATTACTTCCATCAAAA
CAAATCAAAGATCCAAAACAATCCAAACCAGTCGACTGGGTTGACGTAAAGGAAATCGAT
GACCCAGAAGATGTTAAACCAGCCGGTCATGACGATATCCCAGCTTCAATCGTTGATCCA
GAAGCTGTCAAACCAGAGGATTGGAATGAAGAAGACGACGGTGAATGGGAAGCCCCAACC
ATCGCCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCCAAATCCAGAATAC
AAAGGTGAATGGGTACACCCATTAATTGATAACCCAGAATACGCTGAAGACAATGAACTC
TACCTCTTTAATGATCTCGGTGCTATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCC
ATCTTTAACAATATGATCGTCACCGACTCTGTCGAAGAAGCTAAAGATTTCTCTGAAAAG
ACCTTTGTTACCAACCAAGAAGCCGAAAAGAAAATGTTTGACGACCTCGAAGCCGCCAAA
GCTGAAGAGAGAAAGAAAGCTGACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAA
GCCGAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGAG
ACAAAAAAGAAGAAGTCAAAAAATCAACCAAAAAAGTNATCANACGAACTTTAAANAAAT
AAATAAANA
sequence update 2001. 6. 1
Translated Amino Acid sequence
ispiiifiiisflfnkkeript*dfycv*fs*flfsilhyqqfiskiplitignqdgllv
igikkmvnqvn*filqvnglvmkikkvfklvkmlvstlyqlnsqvsvtkvki*fsntl*r
mnkklivvvhtssyyhpn*INQHSMVNLNIPLCLVQMFVVPQRXFHVILNYKGKNHLIKK
EINKVETDQLTHQYTLVI---

---KEIQAGNLADDWELLPSKQIKDPKQSKPVDWVDVKEIDDPEDVKPAGHDDIPASIVD
PEAVKPEDWNEEDDGEWEAPTIANPEYKGEWKAKKIPNPEYKGEWVHPLIDNPEYAEDNE
LYLFNDLGAIGFELWQVKSGSIFNNMIVTDSVEEAKDFSEKTFVTNQEAEKKMFDDLEAA
KAEERKKADEKLAAEKAAEKEAEEADEEEEEVAEEDLVKTETKKKKSKNQPKKXSXEL*x
nk*x


Translated Amino Acid sequence (All Frames)
Frame A:
nfsnhhiynyiffv**krkntnmrlllcliflvfvfnfalstvhfkdtfdndwesrwvvs
dwhkedgksgklvhtagkwfgdenqkgiqtsedarfyavsakfpsfsnkgkdlvlqytvk
neqkvdcggsyikllpskldqsafdgeseysimfgpdvcgaskrxsrhsqlqrkepfnqe
rnqqs*nrsinssihfgh---

---KEIQAGNLADDWELLPSKQIKDPKQSKPVDWVDVKEIDDPEDVKPAGHDDIPASIVD
PEAVKPEDWNEEDDGEWEAPTIANPEYKGEWKAKKIPNPEYKGEWVHPLIDNPEYAEDNE
LYLFNDLGAIGFELWQVKSGSIFNNMIVTDSVEEAKDFSEKTFVTNQEAEKKMFDDLEAA
KAEERKKADEKLAAEKAAEKEAEEADEEEEEVAEEDLVKTETKKKKSKNQPKKXSXEL*x
nk*x

Frame B:
ispiiifiiisflfnkkeript*dfycv*fs*flfsilhyqqfiskiplitignqdgllv
igikkmvnqvn*filqvnglvmkikkvfklvkmlvstlyqlnsqvsvtkvki*fsntl*r
mnkklivvvhtssyyhpn*INQHSMVNLNIPLCLVQMFVVPQRXFHVILNYKGKNHLIKK
EINKVETDQLTHQYTLVI---

---krskqvtslmignyfhqnkskiqnnpnqstglt*rksmtqkmlnqpvmtisqlqsli
qklsnqrigmkkttvngkpqpspiqntkvngkqrksqiqntkvngyth*litqntlktmn
stslmisvlsvsnygklnlvpslti*ssptlskklkislkrpllptkkpkrkclttskpp
klkrerkltkn*lpkkllkkkpkklmkkkkkslkki*lklrqkrrsqkinqksxxtnfkx
ink

Frame C:
flqssyl*lylfclikkkeyqhetfivfnflsfcfqfciinssfqryl**rlgikmgc**
la*rrw*ir*issycr*mvw**kskrysn**rcsflrcis*ipkfq*qr*rfsspihcke
*tks*lwwfihqvitiqirsisirw*i*ifhyvwsrclwclkexftsfsttkerti*srk
kstklkpin*lintlwsf---

---rdpsr*pr**lgitsiktnqrsktiqtsrlg*rkgnr*prrc*tsrs*rypsfnr*s
rscqtrgle*rrrr*mgspnhrqsriqr*meskenpksriqr*mgtpin**prir*rq*t
lpl**srcyrfrimas*iwfhl*qydrhrlcrrs*rfl*kdlcyqprsrkenv*rprsrq
s*rekes*rkiscrksc*krsrrs**rrrrsr*rrfs*n*dkkeevkkstkkvixrtlxk
*ix

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFO633 (AFO633Q) /CSM/AF/AFO6-B/AFO633Q.Seq.d/ 1992 0.0
VFL130 (VFL130Q) /CSM/VF/VFL1-B/VFL130Q.Seq.d/ 1066 0.0
VFI619 (VFI619Q) /CSM/VF/VFI6-A/VFI619Q.Seq.d/ 1066 0.0
VFE283 (VFE283Q) /CSM/VF/VFE2-D/VFE283Q.Seq.d/ 1066 0.0
VFE122 (VFE122Q) /CSM/VF/VFE1-A/VFE122Q.Seq.d/ 1066 0.0
SFH171 (SFH171Q) /CSM/SF/SFH1-C/SFH171Q.Seq.d/ 1066 0.0
SFG873 (SFG873Q) /CSM/SF/SFG8-D/SFG873Q.Seq.d/ 1066 0.0
CHC137 (CHC137Q) /CSM/CH/CHC1-B/CHC137Q.Seq.d/ 1066 0.0
AFO794 (AFO794Q) /CSM/AF/AFO7-D/AFO794Q.Seq.d/ 1066 0.0
AFO349 (AFO349Q) /CSM/AF/AFO3-C/AFO349Q.Seq.d/ 1066 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U36937|U36937.1 Dictyostelium discoideum calreticulin mRNA, complete cds. 1067 0.0 4
BD248385|BD248385.1 Gene participating in tolerance against environmental stress. 92 4e-28 4
BH160872|BH160872.1 ENTRI18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 80 2e-17 3
AZ543757|AZ543757.1 ENTGD24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 80 8e-11 1
BI921109|BI921109.1 EST541012 tomato callus Lycopersicon esculentum cDNA clone cLEC72A21 5' end, mRNA sequence. 74 9e-11 2
AW626316|AW626316.1 EST320223 tomato radicle, 5 d post-imbibition, Cornell University Lycopersicon esculentum cDNA clone cLEZ19K24 5', mRNA sequence. 74 5e-09 1
BE459798|BE459798.1 EST415090 tomato developing/immature green fruit Lycopersicon esculentum cDNA clone cLEM8G13, mRNA sequence. 74 5e-09 1
AI771812|AI771812.1 EST252912 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED38E1, mRNA sequence. 74 5e-09 1
BE435540|BE435540.1 EST406618 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG27F24, mRNA sequence. 74 5e-09 1
AW932476|AW932476.1 EST358319 tomato fruit mature green, TAMU Lycopersicon esculentum cDNA clone cLEF48O8 5', mRNA sequence. 74 5e-09 1
dna update 2003. 9.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U36937_1(U36937|pid:none) Dictyostelium discoideum calreticulin ... 572 e-161
AF283816_1(AF283816|pid:none) Pinus taeda calreticulin mRNA, com... 346 9e-94
(Q9XF98) RecName: Full=Calreticulin; Flags: Precursor; &AF13473... 345 2e-93
AB196794_1(AB196794|pid:none) Glycine max Gm crt-1 mRNA for calr... 345 2e-93
(Q40401) RecName: Full=Calreticulin; Flags: Precursor; &T16968(... 345 3e-93
AC133339_28(AC133339|pid:none) Oryza sativa chromosome 3 BAC OSJ... 345 3e-93
EF085019_1(EF085019|pid:none) Picea sitchensis clone WS0297_I16 ... 344 4e-93
EU984501_1(EU984501|pid:none) Nicotiana tabacum calreticulin mRN... 343 8e-93
AY836753_1(AY836753|pid:none) Triticum aestivum calreticulin-lik... 341 3e-92
EF084103_1(EF084103|pid:none) Picea sitchensis clone WS0274_F04 ... 341 4e-92
protein update 2009. 4.26
PSORT

psg: 0.92 gvh: 0.43 alm: 0.34 top: 0.70 tms: 0.00 mit: 0.31 mip: 0.05
nuc: 0.10 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
40.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for AFO633 is cyt

5' end seq. ID AFO633F
5' end seq.
>AFO633F.Seq
AATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAAT
ACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTA
TCAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGT
GATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTT
GGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCA
GCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAG
AATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGAT
CAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGT
GCCTCAAAGAGANTTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAA
AGAAATCAACAAAGTTGAAACCGATCAATTAACTCATCAATACACTTTGGTCATTT----
------
Length of 5' end seq. 596
3' end seq. ID AFO633Z
3' end seq.
>AFO633Z.Seq
----------AAAGAGATCCAAGCAGGTAACCTCGCTGATGATTGGGAATTACTTCCATC
AAAACAAATCAAAGATCCAAAACAATCCAAACCAGTCGACTGGGTTGACGTAAAGGAAAT
CGATGACCCAGAAGATGTTAAACCAGCCGGTCATGACGATATCCCAGCTTCAATCGTTGA
TCCAGAAGCTGTCAAACCAGAGGATTGGAATGAAGAAGACGACGGTGAATGGGAAGCCCC
AACCATCGCCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCCAAATCCAGA
ATACAAAGGTGAATGGGTACACCCATTAATTGATAACCCAGAATACGCTGAAGACAATGA
ACTCTACCTCTTTAATGATCTCGGTGCTATCGGTTTCGAATTATGGCAAGTTAAATCTGG
TTCCATCTTTAACAATATGATCGTCACCGACTCTGTCGAAGAAGCTAAAGATTTCTCTGA
AAAGACCTTTGTTACCAACCAAGAAGCCGAAAAGAAAATGTTTGACGACCTCGAAGCCGC
CAAAGCTGAAGAGAGAAAGAAAGCTGACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAA
AGAAGCCGAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAAGATTTAGTTAAAAC
TGAGACAAAAAAGAAGAAGTCAAAAAATCAACCAAAAAAGTNATCANACGAACTTTAAAN
AAATAAATAAANA
Length of 3' end seq. 723
Connected seq. ID AFO633P
Connected seq.
>AFO633P.Seq
AATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAAT
ACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTA
TCAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGT
GATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTT
GGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCA
GCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAG
AATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGAT
CAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGT
GCCTCAAAGAGANTTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAA
AGAAATCAACAAAGTTGAAACCGATCAATTAACTCATCAATACACTTTGGTCATTT----
------AAAGAGATCCAAGCAGGTAACCTCGCTGATGATTGGGAATTACTTCCATCAAAA
CAAATCAAAGATCCAAAACAATCCAAACCAGTCGACTGGGTTGACGTAAAGGAAATCGAT
GACCCAGAAGATGTTAAACCAGCCGGTCATGACGATATCCCAGCTTCAATCGTTGATCCA
GAAGCTGTCAAACCAGAGGATTGGAATGAAGAAGACGACGGTGAATGGGAAGCCCCAACC
ATCGCCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCCAAATCCAGAATAC
AAAGGTGAATGGGTACACCCATTAATTGATAACCCAGAATACGCTGAAGACAATGAACTC
TACCTCTTTAATGATCTCGGTGCTATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCC
ATCTTTAACAATATGATCGTCACCGACTCTGTCGAAGAAGCTAAAGATTTCTCTGAAAAG
ACCTTTGTTACCAACCAAGAAGCCGAAAAGAAAATGTTTGACGACCTCGAAGCCGCCAAA
GCTGAAGAGAGAAAGAAAGCTGACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAA
GCCGAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGAG
ACAAAAAAGAAGAAGTCAAAAAATCAACCAAAAAAGTNATCANACGAACTTTAAANAAAT
AAATAAANA
Length of connected seq. 1319
Full length Seq ID -
Full length Seq. -
Length of full length seq. -