AFO631
Library AF
(Link to library)
Clone ID AFO631
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15671-1
Original site URL
Representative seq. ID AFO631P
(Link to Original site)
Representative DNA sequence
>AFO631 (AFO631Q) /CSM/AF/AFO6-B/AFO631Q.Seq.d/
AATTAAAAATATAATTGTGGTACATAAACAAAGGTGACGACTAATCACAATTCTTATTTA
TAAGATCTCAACTACACCAAAACACAAACAACCTGGAAATAAAAACCAAACAACAAACGA
GGTTAACATTGTATAATAAAATTGTATAAATCAAACAACAACAACAATAATAACAAAAAT
ATATAAATAATAAAGGTCATTTTAAAATGAGTTCTGTTGAATTTTCAAATCAGCCAGTTG
TTATTGATAATGGATCAGGTGTTATTAAAGCAGGTTTTGCAGGTCAAGATCCACCATCAC
ATATTTTTCAATCATTAGTTGGTAATCCAAAATATAAAAAAGTTATGGGTTTAAATATTG
AAAATGAATCTACATATTTTGTTGGTGATAGAATCAATGATTGGAGAGGAATTTTAAAAT
TAAAACATCCAATGGATCATGGTATAGTTTCAAATTGGAGTGATATGGAAAGAGTTTGGA
CATATACTTATGATCAATTAAAAATTCAACCTTCAGAGCATCCAGTATTATTAACAGATG
TACCAAATAATCCAAGATTACATAGAGAAAGAGCAGCACAATTATTTTTTGAAACTTATA
ATGCACCAGCACTTTATTXXXXXXXXXXAAANGNAATTNAATTGGGNGCTGAANGNTTCC
GNGCNCCAAANATNTTATTTNATCCANANATCATTGGNGATGAATCTTTGGGNATTNANC
AANGNTTANANATGNCCNTTAAAAAAAGTGATNTCGATNTTAAAAAAACNTTTTATTCAA
ANATCANACTTGGNGGNGGNTCAACTCTCNTTCAAGGNTTTGGNGATCGTCTTTTAAANG
AAGNCAAAAAATTGGNNCCNAAANATATTAAAATTNAAATTTCTGCCCCNCCTGAACGNA
AAAACCCNGCNTGGANGGGNGGNTCTANTTTAGCNTCNCCANCNNCCCTTAAANANTTAN
GG
sequence update 2001. 6. 1
Translated Amino Acid sequence
lki*lwyinkgdd*sqflfirsqlhqntnnleiktkqqtrltlynkiv*ikqqqq**QKY
INNKGHFKMSSVEFSNQPVVIDNGSGVIKAGFAGQDPPSHIFQSLVGNPKYKKVMGLNIE
NESTYFVGDRINDWRGILKLKHPMDHGIVSNWSDMERVWTYTYDQLKIQPSEHPVLLTDV
PNNPRLHRERAAQLFFETYNAPALY---

---XXIXLGAEXFRAPXXLFXPXIIGDESLGIXQXLXMXXKKSDXDXKKTFYSXIXLGGG
STLXQGFGDRLLXEXKKLXPKXIKIXISAPPERKNPAWXGGSXLASPXXLKXLX


Translated Amino Acid sequence (All Frames)
Frame A:
n*kyncgt*tkvttnhnsyl*dlnytktqttwk*kpnnkrg*hciiklyksnnnnnnnkn
i*iikvilk*vllnfqisqlllimdqvllkqvlqvkihhhiffnh*lviqnikklwv*il
kmnlhillviesmigeef*n*niqwimv*fqigviwkefghilmin*kfnlqsiqyy*qm
yqiiqdyiekeqhnyflklimhqhfi---

---kxnxigx*xxpxxkxxixsxxhwx*ifgxxxxxxxxx*kk*xrx*knxlfkxxtwxx
xnsxsrxwxssfkxxqkigxxxy*nxnfcpx*txkpxxxgxxxfsxxxxp*xxx

Frame B:
ikniivvhkqr*rlitiliykisttpkhkqpgnknqttnevniv**ncinqttttiitki
yk**rsf*nefc*ifksascy**wircy*srfcrsrstityfsiisw*ski*ksygfky*
k*iyifcw**nq*lernfkiktsngswysfkle*ygksldiyl*siknstfrassiinrc
tk*skit*rksstiif*nl*ctstl---

---XXIXLGAEXFRAPXXLFXPXIIGDESLGIXQXLXMXXKKSDXDXKKTFYSXIXLGGG
STLXQGFGDRLLXEXKKLXPKXIKIXISAPPERKNPAWXGGSXLASPXXLKXLX

Frame C:
lki*lwyinkgdd*sqflfirsqlhqntnnleiktkqqtrltlynkiv*ikqqqq**QKY
INNKGHFKMSSVEFSNQPVVIDNGSGVIKAGFAGQDPPSHIFQSLVGNPKYKKVMGLNIE
NESTYFVGDRINDWRGILKLKHPMDHGIVSNWSDMERVWTYTYDQLKIQPSEHPVLLTDV
PNNPRLHRERAAQLFFETYNAPALY---

---xxxnwxlxxsxxqxxyxixxslxmnlwxxxxxxxxplkkvxsxlkkxfiqxsxlxxx
qlsfkxlxivf*xkxknwxxxilkxkflpxlnxktxxgxxxlx*xxxxplxxx

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFO631 (AFO631Q) /CSM/AF/AFO6-B/AFO631Q.Seq.d/ 987 0.0
VFE195 (VFE195Q) /CSM/VF/VFE1-D/VFE195Q.Seq.d/ 844 0.0
SFI889 (SFI889Q) /CSM/SF/SFI8-D/SFI889Q.Seq.d/ 844 0.0
AFD480 (AFD480Q) /CSM/AF/AFD4-D/AFD480Q.Seq.d/ 844 0.0
AFD435 (AFD435Q) /CSM/AF/AFD4-B/AFD435Q.Seq.d/ 844 0.0
AFA853 (AFA853Q) /CSM/AF/AFA8-C/AFA853Q.Seq.d/ 844 0.0
AFH738 (AFH738Q) /CSM/AF/AFH7-B/AFH738Q.Seq.d/ 833 0.0
VFC680 (VFC680Q) /CSM/VF/VFC6-D/VFC680Q.Seq.d/ 829 0.0
VFN250 (VFN250Q) /CSM/VF/VFN2-C/VFN250Q.Seq.d/ 791 0.0
AFB651 (AFB651Q) /CSM/AF/AFB6-C/AFB651Q.Seq.d/ 769 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BF297775|BF297775.1 056PbB01 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence. 50 7e-08 3
BX303390|BX303390.1 AGENAE Rainbow trout multi-tissues subtracted library (tcay) clone tcay0011b.h.19, 5prim end (M13F primer). 68 2e-07 1
BX311771|BX311771.1 AGENAE Rainbow trout multi-tissues subtracted library (tcay) clone tcay0024b.e.22, 5prim end (M13F primer). 68 2e-07 1
BX298107|BX298107.1 AGENAE Rainbow trout multi-tissues subtracted library (tcay) clone tcay0001b.p.08, 5prim end (M13F primer). 68 2e-07 1
BX315092|BX315092.1 AGENAE Rainbow trout multi-tissues subtracted library (tcay) clone tcay0029b.d.02, 5prim end (M13F primer). 68 2e-07 1
BX315547|BX315547.1 AGENAE Rainbow trout multi-tissues subtracted library (tcay) clone tcay0031b.c.13, 5prim end (M13F primer). 68 2e-07 1
CA373706|CA373706.1 647911 NCCCWA 1RT Oncorhynchus mykiss cDNA clone 1RT15M17_A_G09 5', mRNA sequence. 68 2e-07 1
BX319865|BX319865.1 AGENAE Rainbow trout multi-tissues subtracted library (tcay) clone tcay0038b.h.01, 5prim end (M13F primer). 68 2e-07 1
CA348032|CA348032.1 679254 NCCCWA 1RT Oncorhynchus mykiss cDNA clone 1RT94J13_B_E07 5', mRNA sequence. 68 2e-07 1
L21184|L21184.1 Pneumocystis carinii actin II gene encoding centractin-like protein mRNA, complete cds. 46 2e-07 3
dna update 2003. 9.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A03000(A03000)actin 3 - fruit fly (Drosophila melanogaster) (fra... 196 7e-49
AL160004_3(AL160004|pid:none) Human DNA sequence from clone RP5-... 182 2e-44
AY280960_1(AY280960|pid:none) Homo sapiens actin alpha 1 skeleta... 181 2e-44
AJ315871_1(AJ315871|pid:none) Plasmodium berghei mRNA for actin 3. 163 7e-39
AM910984_95(AM910984|pid:none) Plasmodium knowlesi strain H chro... 161 3e-38
AL031745_29(AL031745|pid:none) Plasmodium falciparum DNA from MA... 161 3e-38
AB170491_1(AB170491|pid:none) Macaca fascicularis brain cDNA clo... 158 3e-37
AM920437_350(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 158 3e-37
AB169693_1(AB169693|pid:none) Macaca fascicularis brain cDNA, cl... 157 4e-37
BC075201_1(BC075201|pid:none) Xenopus laevis ARP1 actin-related ... 157 5e-37
protein update 2009. 4.26
PSORT

psg: 0.74 gvh: 0.29 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: cytoskeletal
12.0 %: mitochondrial
4.0 %: extracellular, including cell wall

>> prediction for AFO631 is nuc

5' end seq. ID AFO631F
5' end seq.
>AFO631F.Seq
AATTAAAAATATAATTGTGGTACATAAACAAAGGTGACGACTAATCACAATTCTTATTTA
TAAGATCTCAACTACACCAAAACACAAACAACCTGGAAATAAAAACCAAACAACAAACGA
GGTTAACATTGTATAATAAAATTGTATAAATCAAACAACAACAACAATAATAACAAAAAT
ATATAAATAATAAAGGTCATTTTAAAATGAGTTCTGTTGAATTTTCAAATCAGCCAGTTG
TTATTGATAATGGATCAGGTGTTATTAAAGCAGGTTTTGCAGGTCAAGATCCACCATCAC
ATATTTTTCAATCATTAGTTGGTAATCCAAAATATAAAAAAGTTATGGGTTTAAATATTG
AAAATGAATCTACATATTTTGTTGGTGATAGAATCAATGATTGGAGAGGAATTTTAAAAT
TAAAACATCCAATGGATCATGGTATAGTTTCAAATTGGAGTGATATGGAAAGAGTTTGGA
CATATACTTATGATCAATTAAAAATTCAACCTTCAGAGCATCCAGTATTATTAACAGATG
TACCAAATAATCCAAGATTACATAGAGAAAGAGCAGCACAATTATTTTTTGAAACTTATA
ATGCACCAGCACTTTATT----------
Length of 5' end seq. 618
3' end seq. ID AFO631Z
3' end seq.
>AFO631Z.Seq
----------AAANGNAATTNAATTGGGNGCTGAANGNTTCCGNGCNCCAAANATNTTAT
TTNATCCANANATCATTGGNGATGAATCTTTGGGNATTNANCAANGNTTANANATGNCCN
TTAAAAAAAGTGATNTCGATNTTAAAAAAACNTTTTATTCAAANATCANACTTGGNGGNG
GNTCAACTCTCNTTCAAGGNTTTGGNGATCGTCTTTTAAANGAAGNCAAAAAATTGGNNC
CNAAANATATTAAAATTNAAATTTCTGCCCCNCCTGAACGNAAAAACCCNGCNTGGANGG
GNGGNTCTANTTTAGCNTCNCCANCNNCCCTTAAANANTTANGG
Length of 3' end seq. 334
Connected seq. ID AFO631P
Connected seq.
>AFO631P.Seq
AATTAAAAATATAATTGTGGTACATAAACAAAGGTGACGACTAATCACAATTCTTATTTA
TAAGATCTCAACTACACCAAAACACAAACAACCTGGAAATAAAAACCAAACAACAAACGA
GGTTAACATTGTATAATAAAATTGTATAAATCAAACAACAACAACAATAATAACAAAAAT
ATATAAATAATAAAGGTCATTTTAAAATGAGTTCTGTTGAATTTTCAAATCAGCCAGTTG
TTATTGATAATGGATCAGGTGTTATTAAAGCAGGTTTTGCAGGTCAAGATCCACCATCAC
ATATTTTTCAATCATTAGTTGGTAATCCAAAATATAAAAAAGTTATGGGTTTAAATATTG
AAAATGAATCTACATATTTTGTTGGTGATAGAATCAATGATTGGAGAGGAATTTTAAAAT
TAAAACATCCAATGGATCATGGTATAGTTTCAAATTGGAGTGATATGGAAAGAGTTTGGA
CATATACTTATGATCAATTAAAAATTCAACCTTCAGAGCATCCAGTATTATTAACAGATG
TACCAAATAATCCAAGATTACATAGAGAAAGAGCAGCACAATTATTTTTTGAAACTTATA
ATGCACCAGCACTTTATT----------AAANGNAATTNAATTGGGNGCTGAANGNTTCC
GNGCNCCAAANATNTTATTTNATCCANANATCATTGGNGATGAATCTTTGGGNATTNANC
AANGNTTANANATGNCCNTTAAAAAAAGTGATNTCGATNTTAAAAAAACNTTTTATTCAA
ANATCANACTTGGNGGNGGNTCAACTCTCNTTCAAGGNTTTGGNGATCGTCTTTTAAANG
AAGNCAAAAAATTGGNNCCNAAANATATTAAAATTNAAATTTCTGCCCCNCCTGAACGNA
AAAACCCNGCNTGGANGGGNGGNTCTANTTTAGCNTCNCCANCNNCCCTTAAANANTTAN
GG
Length of connected seq. 952
Full length Seq ID -
Full length Seq. -
Length of full length seq. -