>AFO629 (AFO629Q) /CSM/AF/AFO6-B/AFO629Q.Seq.d/
AACCAAATNAAGAAAAACTAATAATATATTTAAGATGTCTGAAAATTCATCACCAAAATT
AGAATCAACATCAGCAGCAGCAGCAAGTACAAAAAAACCATTCCCAGAATGGATTAAACC
TAAAGGCAAAGAAACTGAATTATTAATTAATAATAGTTTAACAGGTGGTAAAGTACCATT
CGTTTTCAATGAAAGTGGTAAAGGTAGATCATTAACATGGTATGCTTGTGGTCCAACAGT
TTATGATGCATCACATATGGGTCATGCTAGAACTTATATTAGTTTTGATATCATTAGACG
TATTATGAAAAATTATCTTGGTTTCAATATCCAATATGTTATGAACATTACCGATATTGA
TGATAAAATCATTATTCGTGCAAATGAAAATGGTATTTCACATAGTGATCTTTCAAAAAA
ATGGGAGACTGCTTTCTTTGAAGATATGAAATTATTAAATGTATTACCACCAGATGCATT
AACAAGAGTTACAGAATATGTACCACAAATTGTTGAATATGTTGAAAAGATTATTTCAAA
TGGATTTGCATATGAATCAAATGGATCAGTTTATTTTGATACAGTAGCATTTTCAAAAGC
ACATGATTATGGTAXXXXXXXXXXTGGAAAAGTATACTTCCACGTCAAATGAGAATGTTT
TTCATTCTTCATAAATATGATAAAGCCATGAACTATTCACCAGAGTCCATGGGTTACGCC
ATTGAAATGGAGAAAACTTTTGTAGAGTTCTTCCATACCGCCAAACAAATCCTTAGAGAT
TCTCCATTATCTTTACCACAATTTTGGACTCAAGCTGAAAAGGATTTAAATAAACATCTT
CAAAATGCAAATGACCAAGTTCATCAATTCATTCTTGATAACTTTAACACCTCTGACGCT
TTGAAAACTTTATCAGATCTCGTCAATAAAACAAATGTTTACATTAGATCATGTGCTGAA
CAAAAGACAAATCCAAGATTAAATTTAATTAGTGCAATCGCAGAGTATATCACTTACATT
TTCTCTGTTTTCGGTTTAACCGAATCTTCAACCGCCTCTTCAATGATTGGTTTCGGTTCC
GCTGGTAAAGGTAATATCGAAGAGGAGATGACTCCAATCTTAAATGCTCTCACTCAATTC
CGTTCAGAGGTACGTGCTTCTGCAATCGCAAAAGATACTACCTCAATCCTTAAAACTTGT
GATAACCTTCGTGATGAGGTTTTACCATTATTGGGCGTAAAGATTGATGATAAATCCGCA
ACAACTGCAATGTGGAAATTTGAAGATAAAGAAACCCTCAAAAAAGAAATNAACAAAAGA
AAGAAATNAAAAGAAGAAACAAG

TKXRKTNNIFKMSENSSPKLESTSAAAASTKKPFPEWIKPKGKETELLINNSLTGGKVPF
VFNESGKGRSLTWYACGPTVYDASHMGHARTYISFDIIRRIMKNYLGFNIQYVMNITDID
DKIIIRANENGISHSDLSKKWETAFFEDMKLLNVLPPDALTRVTEYVPQIVEYVEKIISN
GFAYESNGSVYFDTVAFSKAHDYG---

---WKSILPRQMRMFFILHKYDKAMNYSPESMGYAIEMEKTFVEFFHTAKQILRDSPLSL
PQFWTQAEKDLNKHLQNANDQVHQFILDNFNTSDALKTLSDLVNKTNVYIRSCAEQKTNP
RLNLISAIAEYITYIFSVFGLTESSTASSMIGFGSAGKGNIEEEMTPILNALTQFRSEVR
ASAIAKDTTSILKTCDNLRDEVLPLLGVKIDDKSATTAMWKFEDKETLKKEXNKRKKXKE
ET

Frame A:
nqxkkn**yi*dv*kfitkirinisssskykktiprmd*t*rqrn*iin***fnrw*sti
rfq*kw*r*iinmvclwsnsl*citygsc*nly*f*yh*tyyeklswfqypicyehyry*
**nhysck*kwyft**sfkkmgdcfl*ryeiikcittrcinksyricttnc*ic*kdyfk
wici*ikwislf*yssifkst*lw---

---WKSILPRQMRMFFILHKYDKAMNYSPESMGYAIEMEKTFVEFFHTAKQILRDSPLSL
PQFWTQAEKDLNKHLQNANDQVHQFILDNFNTSDALKTLSDLVNKTNVYIRSCAEQKTNP
RLNLISAIAEYITYIFSVFGLTESSTASSMIGFGSAGKGNIEEEMTPILNALTQFRSEVR
ASAIAKDTTSILKTCDNLRDEVLPLLGVKIDDKSATTAMWKFEDKETLKKEXNKRKKXKE
ET

Frame B:
TKXRKTNNIFKMSENSSPKLESTSAAAASTKKPFPEWIKPKGKETELLINNSLTGGKVPF
VFNESGKGRSLTWYACGPTVYDASHMGHARTYISFDIIRRIMKNYLGFNIQYVMNITDID
DKIIIRANENGISHSDLSKKWETAFFEDMKLLNVLPPDALTRVTEYVPQIVEYVEKIISN
GFAYESNGSVYFDTVAFSKAHDYG---

---gkvyfhvk*ecfsffinmikp*tihqspwvtplkwrkll*sssippnksleilhyly
hnfglklkri*inifkmqmtkfinsflitltpltl*klyqissikqmftldhvlnkrqiq
d*i*lvqsqsisltfslfsv*pnlqpplq*lvsvplvkviskrr*lqs*mlslnsvqryv
llqsqkilpqslklvitfvmrfyhywa*rlminpqqlqcgnlkikkpskkkxtkernxkk
kq

Frame C:
pnxekliiylrclkihhqn*nqhqqqqqvqknhsqnglnlkakklny*liiv*qvvkyhs
fsmkvvkvdh*hgmlvvqqfmmhhiwvmlelilvlisldvl*kiilvsisnml*tlpilm
ikslfvqmkmvfhivifqkngrllslki*ny*myyhqmh*qelqnmyhkllnmlkrlfqm
dlhmnqmdqfiliq*hfqkhmimv---

---ekytstsnenvfhss*i**shelftrvhglrh*ngenfcrvlpyrqtnp*rfsiift
tildss*kgfk*tsskck*psssihs**l*hl*rfenfirsrq*nkclh*imc*tkdksk
ikfn*cnrrvyhlhflcfrfnrifnrlfndwfrfrw*r*yrrgddsnlkcshsipfrgtc
fcnrkryylnp*nl**ps**gftiigrkd***irnncnvei*r*rnpqkrnxqkkexkrr
nk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFO629 (AFO629Q) /CSM/AF/AFO6-B/AFO629Q.Seq.d/                       2389   0.0
SFI454 (SFI454Q) /CSM/SF/SFI4-C/SFI454Q.Seq.d/                       1285   0.0
SFD396 (SFD396Q) /CSM/SF/SFD3-D/SFD396Q.Seq.d/                       1269   0.0
AFO752 (AFO752Q) /CSM/AF/AFO7-C/AFO752Q.Seq.d/                       1269   0.0
AFJ714 (AFJ714Q) /CSM/AF/AFJ7-A/AFJ714Q.Seq.d/                       1263   0.0
AFM118 (AFM118Q) /CSM/AF/AFM1-A/AFM118Q.Seq.d/                       1257   0.0
VFL754 (VFL754Q) /CSM/VF/VFL7-C/VFL754Q.Seq.d/                       1251   0.0
CHD303 (CHD303Q) /CSM/CH/CHD3-A/CHD303Q.Seq.d/                       1239   0.0
AFJ344 (AFJ344Q) /CSM/AF/AFJ3-B/AFJ344Q.Seq.d/                       1239   0.0
AFJ330 (AFJ330Q) /CSM/AF/AFJ3-B/AFJ330Q.Seq.d/                       1193   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AQ449880|AQ449880.1 500005E02.x1 CpIOWAM13mp18gDNA1 Cryptosporidium parvum genomic similar to cysteinyl-tRNA synthetase, DNA sequence.    66  1e-06  1
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    60  7e-06  9
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    36  0.001  10
BM400907|BM400907.1 5009-0-80-A04.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    44  0.058  2
BQ547227|BQ547227.1 EST630854 TpMugugaSh01 Theileria parva cDNA clone TPFDB67, mRNA sequence.    38  0.097  3
BX538350|BX538350.1 Cryptosporidium parvum chromosome 6, complete sequence; segment 1/4.    58  0.11  5
AC113261|AC113261.1 Trypanosoma cruzi chromosome 3 clone cosmid Tcc1f17 strain CL Brener, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    50  0.20  2
AC104495|AC104495.1 Trypanosoma cruzi chromosome 3 clone cosmid Tcc1k6 strain CL Brener, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    50  0.21  2
AE002113|AE002113.1 Ureaplasma urealyticum section 14 of 59 of the complete genome.    44  0.22  3
AC132305|AC132305.1 Mus musculus chromosome UNK clone RP24-286A19, WORKING DRAFT SEQUENCE, 10 unordered pieces.    48  0.29  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014185_147(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...   191   4e-47
BX538350_42(BX538350|pid:none) Cryptosporidium parvum chromosome...   188   3e-46
AL590448_49(AL590448|pid:none) chromosome VIII of strain GB-M1 o...   172   2e-41
CR940352_62(CR940352|pid:none) Theileria annulata strain Ankara ...   163   1e-38
BC166536_1(BC166536|pid:none) Rattus norvegicus similar to hypot...   162   2e-38
(Q8BYM8) RecName: Full=Probable cysteinyl-tRNA synthetase, mitoc...   160   9e-38
AK021302_1(AK021302|pid:none) Mus musculus 13 days embryo stomac...   160   9e-38
AK009937_1(AK009937|pid:none) Mus musculus adult male tongue cDN...   160   9e-38
AK041962_1(AK041962|pid:none) Mus musculus 3 days neonate thymus...   160   9e-38
BC007220_1(BC007220|pid:none) Homo sapiens cysteinyl-tRNA synthe...   159   2e-37

 psg: 0.58  gvh: 0.38  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.02
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: peroxisomal

>> prediction for AFO629 is nuc

>AFO629F.Seq
AACCAAATNAAGAAAAACTAATAATATATTTAAGATGTCTGAAAATTCATCACCAAAATT
AGAATCAACATCAGCAGCAGCAGCAAGTACAAAAAAACCATTCCCAGAATGGATTAAACC
TAAAGGCAAAGAAACTGAATTATTAATTAATAATAGTTTAACAGGTGGTAAAGTACCATT
CGTTTTCAATGAAAGTGGTAAAGGTAGATCATTAACATGGTATGCTTGTGGTCCAACAGT
TTATGATGCATCACATATGGGTCATGCTAGAACTTATATTAGTTTTGATATCATTAGACG
TATTATGAAAAATTATCTTGGTTTCAATATCCAATATGTTATGAACATTACCGATATTGA
TGATAAAATCATTATTCGTGCAAATGAAAATGGTATTTCACATAGTGATCTTTCAAAAAA
ATGGGAGACTGCTTTCTTTGAAGATATGAAATTATTAAATGTATTACCACCAGATGCATT
AACAAGAGTTACAGAATATGTACCACAAATTGTTGAATATGTTGAAAAGATTATTTCAAA
TGGATTTGCATATGAATCAAATGGATCAGTTTATTTTGATACAGTAGCATTTTCAAAAGC
ACATGATTATGGTA----------

>AFO629Z.Seq
----------TGGAAAAGTATACTTCCACGTCAAATGAGAATGTTTTTCATTCTTCATAA
ATATGATAAAGCCATGAACTATTCACCAGAGTCCATGGGTTACGCCATTGAAATGGAGAA
AACTTTTGTAGAGTTCTTCCATACCGCCAAACAAATCCTTAGAGATTCTCCATTATCTTT
ACCACAATTTTGGACTCAAGCTGAAAAGGATTTAAATAAACATCTTCAAAATGCAAATGA
CCAAGTTCATCAATTCATTCTTGATAACTTTAACACCTCTGACGCTTTGAAAACTTTATC
AGATCTCGTCAATAAAACAAATGTTTACATTAGATCATGTGCTGAACAAAAGACAAATCC
AAGATTAAATTTAATTAGTGCAATCGCAGAGTATATCACTTACATTTTCTCTGTTTTCGG
TTTAACCGAATCTTCAACCGCCTCTTCAATGATTGGTTTCGGTTCCGCTGGTAAAGGTAA
TATCGAAGAGGAGATGACTCCAATCTTAAATGCTCTCACTCAATTCCGTTCAGAGGTACG
TGCTTCTGCAATCGCAAAAGATACTACCTCAATCCTTAAAACTTGTGATAACCTTCGTGA
TGAGGTTTTACCATTATTGGGCGTAAAGATTGATGATAAATCCGCAACAACTGCAATGTG
GAAATTTGAAGATAAAGAAACCCTCAAAAAAGAAATNAACAAAAGAAAGAAATNAAAAGA
AGAAACAAG

>AFO629P.Seq
AACCAAATNAAGAAAAACTAATAATATATTTAAGATGTCTGAAAATTCATCACCAAAATT
AGAATCAACATCAGCAGCAGCAGCAAGTACAAAAAAACCATTCCCAGAATGGATTAAACC
TAAAGGCAAAGAAACTGAATTATTAATTAATAATAGTTTAACAGGTGGTAAAGTACCATT
CGTTTTCAATGAAAGTGGTAAAGGTAGATCATTAACATGGTATGCTTGTGGTCCAACAGT
TTATGATGCATCACATATGGGTCATGCTAGAACTTATATTAGTTTTGATATCATTAGACG
TATTATGAAAAATTATCTTGGTTTCAATATCCAATATGTTATGAACATTACCGATATTGA
TGATAAAATCATTATTCGTGCAAATGAAAATGGTATTTCACATAGTGATCTTTCAAAAAA
ATGGGAGACTGCTTTCTTTGAAGATATGAAATTATTAAATGTATTACCACCAGATGCATT
AACAAGAGTTACAGAATATGTACCACAAATTGTTGAATATGTTGAAAAGATTATTTCAAA
TGGATTTGCATATGAATCAAATGGATCAGTTTATTTTGATACAGTAGCATTTTCAAAAGC
ACATGATTATGGTA----------TGGAAAAGTATACTTCCACGTCAAATGAGAATGTTT
TTCATTCTTCATAAATATGATAAAGCCATGAACTATTCACCAGAGTCCATGGGTTACGCC
ATTGAAATGGAGAAAACTTTTGTAGAGTTCTTCCATACCGCCAAACAAATCCTTAGAGAT
TCTCCATTATCTTTACCACAATTTTGGACTCAAGCTGAAAAGGATTTAAATAAACATCTT
CAAAATGCAAATGACCAAGTTCATCAATTCATTCTTGATAACTTTAACACCTCTGACGCT
TTGAAAACTTTATCAGATCTCGTCAATAAAACAAATGTTTACATTAGATCATGTGCTGAA
CAAAAGACAAATCCAAGATTAAATTTAATTAGTGCAATCGCAGAGTATATCACTTACATT
TTCTCTGTTTTCGGTTTAACCGAATCTTCAACCGCCTCTTCAATGATTGGTTTCGGTTCC
GCTGGTAAAGGTAATATCGAAGAGGAGATGACTCCAATCTTAAATGCTCTCACTCAATTC
CGTTCAGAGGTACGTGCTTCTGCAATCGCAAAAGATACTACCTCAATCCTTAAAACTTGT
GATAACCTTCGTGATGAGGTTTTACCATTATTGGGCGTAAAGATTGATGATAAATCCGCA
ACAACTGCAATGTGGAAATTTGAAGATAAAGAAACCCTCAAAAAAGAAATNAACAAAAGA
AAGAAATNAAAAGAAGAAACAAG