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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHM818
Library VH
(Link to library)
Clone ID VHM818
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16379-1
Original site URL
Representative seq. ID VHM818P
(Link to Original site)
Representative DNA sequence 
>VHM818 (VHM818Q) /CSM/VH/VHM8-A/VHM818Q.Seq.d/
ATTTTAATTTTATACATATAAATAATAATATAGTTGAAAAAATGTGTGATCATAAACATT
TAGTTGACAAAGTAGATAGATTAGTATTACCAGATAATATCGTACCAAGTAAATACGATT
TACATCTTANACCAAATTTAAAGGATTTTGTATTCANCGGCAAAGTTGACATTACAATCA
ATATTGTTAAACCAACCAAAAAAATCATTATCCATTCAATTGACATTGAAATTCAATCAG
TAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTACTATGAACCAGAANAAGTTGCAA
TTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAATACAATTCTCTCCATTGATTTCA
CTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAATATGTTGTCAATGGTG
AANATCGTTATATTGGTACCACTCAAXXXXXXXXXXTAAGAGATAAAAGTAAACACTAAA
TTGGGTATGTTGGGTGATGCTGATATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTC
AAAGCAGACTCTTCAAGTTTACCATCAGATATTCGTTCTACAGTACTTGCTACAATCGTA
AAGAATGGTGGTGAAGCTGATCAACAAATCATCATTGATCAATATCTTAAATCTTCTTTA
GTCGCTGAAAAGAATTCTTACCTTTTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTT
GAAAAAGCCCTCAATTTCGCTTTATCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTT
TTCTTTACCCTCCCAAATCGTGTTCGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTT
AATCAAATCAACGAAACATTTAAAAACTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGT
CTCACCTCTAAAATGGATGATTCTCAATACAATGAAGTCGTCAACTTTTTCAAAGATCAT
CCAGTTCCAATT
sequence update 2002.10.25
Translated Amino Acid sequence 
FNFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLHLXPNLKDFVFXGKVDITIN
IVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEXVAILEFQDELPVTENTILSIDFT
GILNDKLKGFYRSKYVVNGEXRYIGTTQ---

---RDKSKH*igyvg*c*yrc*m*ekirsfqsrlfkftirysfystcynrkeww*s*stn
hh*sis*iffsr*keflpfgtcfgskrgig*kspqfrfisir*ksr*lygflyppkscss
irlglphqkl*snqrni*klsfvwsyhw*lshl*ng*fsiq*srqlfqrssssn
Translated Amino Acid sequence (All Frames) 
Frame A:
ililyi*iii*lkkcviini*ltk*id*yyqiisyqvntiyilxqi*rilysxakltlqs
illnqpkkslsiqltlkfnq*rs*inkllplptmnqxklqf*nskmnyqlqkiqfsplis
lvf*mtn*kvsivqnmlsmvxivilvpl---

---*eikvntklgmlgdadivaeckkrfeafkadssslpsdirstvlativknggeadqq
iiidqylksslvaeknsyllvlalapkeelvekalnfalspsvrsqdsymvfftlpnrvr
qfawayltknfnqinetfknsplfgriigscltskmddsqynevvnffkdhpvpi

Frame B:
f*fytyk**ys*knv*s*tfs*qsr*isitr*yrtk*irftsxtkfkgfcixrqs*hynq
yc*tnqknhypfn*h*nsiskdlkstsyfryll*trxscnfripr*itsyrkynslh*fh
wyfk*qikrflsfkiccqw*xslywyhs---

---kr*k*tlnwvcwvmlisllnvrkdsklskqtlqvyhqifvlqyllqs*rmvvklink
sslinilnll*slkriltfwyllwlqkrnwlkkpsislylhplevkiviwfslpsqivfv
nslgltspktlikstkhlktllclvvslvvvsplkwmilntmksstfskiiqfq

Frame C:
FNFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLHLXPNLKDFVFXGKVDITIN
IVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEXVAILEFQDELPVTENTILSIDFT
GILNDKLKGFYRSKYVVNGEXRYIGTTQ---

---RDKSKH*igyvg*c*yrc*m*ekirsfqsrlfkftirysfystcynrkeww*s*stn
hh*sis*iffsr*keflpfgtcfgskrgig*kspqfrfisir*ksr*lygflyppkscss
irlglphqkl*snqrni*klsfvwsyhw*lshl*ng*fsiq*srqlfqrssssn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHM818 (VHM818Q) /CSM/VH/VHM8-A/VHM818Q.Seq.d/                       1802   0.0
VHQ478 (VHQ478Q) /CSM/VH/VHQ4-D/VHQ478Q.Seq.d/                       1007   0.0
VHQ457 (VHQ457Q) /CSM/VH/VHQ4-C/VHQ457Q.Seq.d/                       1007   0.0
VHQ308 (VHQ308Q) /CSM/VH/VHQ3-A/VHQ308Q.Seq.d/                       1007   0.0
VHQ305 (VHQ305Q) /CSM/VH/VHQ3-A/VHQ305Q.Seq.d/                       1007   0.0
VHQ164 (VHQ164Q) /CSM/VH/VHQ1-C/VHQ164Q.Seq.d/                       1007   0.0
VHP820 (VHP820Q) /CSM/VH/VHP8-A/VHP820Q.Seq.d/                       1007   0.0
VHP808 (VHP808Q) /CSM/VH/VHP8-A/VHP808Q.Seq.d/                       1007   0.0
VHP754 (VHP754Q) /CSM/VH/VHP7-C/VHP754Q.Seq.d/                       1007   0.0
VHP622 (VHP622Q) /CSM/VH/VHP6-A/VHP622Q.Seq.d/                       1007   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ444334) Dictyostelium discoideum cDNA clone:ddv56d06, 3' ...  1023   0.0    1
(BJ446808) Dictyostelium discoideum cDNA clone:ddv63l20, 3' ...  1005   0.0    1
(BJ446740) Dictyostelium discoideum cDNA clone:ddv63o15, 3' ...  1005   0.0    1
(BJ446678) Dictyostelium discoideum cDNA clone:ddv63b16, 3' ...  1005   0.0    1
(BJ446593) Dictyostelium discoideum cDNA clone:ddv63p01, 3' ...  1005   0.0    1
(BJ446563) Dictyostelium discoideum cDNA clone:ddv63j01, 3' ...  1005   0.0    1
(BJ446415) Dictyostelium discoideum cDNA clone:ddv62l13, 3' ...  1005   0.0    1
(BJ446279) Dictyostelium discoideum cDNA clone:ddv62a11, 3' ...  1005   0.0    1
(BJ446274) Dictyostelium discoideum cDNA clone:ddv62p02, 3' ...  1005   0.0    1
(BJ446256) Dictyostelium discoideum cDNA clone:ddv62k06, 3' ...  1005   0.0    1
dna update 2008.12. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY631393_1(AY631393|pid:none) Dictyostelium discoideum puromycin...   166   1e-39
AE014296_282(AE014296|pid:none) Drosophila melanogaster chromoso...    95   3e-18
AE014296_281(AE014296|pid:none) Drosophila melanogaster chromoso...    95   3e-18
AF327435_1(AF327435|pid:none) Drosophila melanogaster puromycin-...    95   3e-18
EU686614_22(EU686614|pid:none) Uncultured marine crenarchaeote K...    88   5e-16
EF678434_1(EF678434|pid:none) Picea sitchensis clone WS02921_A14...    85   3e-15
EF676179_1(EF676179|pid:none) Picea sitchensis clone WS02717_G19...    84   6e-15
(Q11011) RecName: Full=Puromycin-sensitive aminopeptidase;      ...    83   1e-14
BC098978_1(BC098978|pid:none) Xenopus laevis hypothetical protei...    82   2e-14
FM992688_411(FM992688|pid:none) Candida dubliniensis CD36 chromo...    79   2e-13
protein update 2009. 7.17
PSORT 

 psg: 0.72  gvh: 0.39  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for VHM818 is nuc
5' end seq. ID VHM818F
5' end seq. 
>VHM818F.Seq
ATTTTAATTTTATACATATAAATAATAATATAGTTGAAAAAATGTGTGATCATAAACATT
TAGTTGACAAAGTAGATAGATTAGTATTACCAGATAATATCGTACCAAGTAAATACGATT
TACATCTTANACCAAATTTAAAGGATTTTGTATTCANCGGCAAAGTTGACATTACAATCA
ATATTGTTAAACCAACCAAAAAAATCATTATCCATTCAATTGACATTGAAATTCAATCAG
TAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTACTATGAACCAGAANAAGTTGCAA
TTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAATACAATTCTCTCCATTGATTTCA
CTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAATATGTTGTCAATGGTG
AANATCGTTATATTGGTACCACTCAANNNNNNNNNN
Length of 5' end seq. 456
3' end seq. ID VHM818Z
3' end seq. 
>VHM818Z.Seq
NNNNNNNNNNTAAGAGATAAAAGTAAACACTAAATTGGGTATGTTGGGTGATGCTGATAT
CGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTTCAAGTTTACCATC
AGATATTCGTTCTACAGTACTTGCTACAATCGTAAAGAATGGTGGTGAAGCTGATCAACA
AATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGAATTCTTACCTTTT
GGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCAATTTCGCTTTATC
TCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCCCAAATCGTGTTCG
TCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAAATCAACGAAACATTTAAAAA
CTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAAATGGATGATTCTCA
ATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATT
Length of 3' end seq. 526
Connected seq. ID VHM818P
Connected seq. 
>VHM818P.Seq
ATTTTAATTTTATACATATAAATAATAATATAGTTGAAAAAATGTGTGATCATAAACATT
TAGTTGACAAAGTAGATAGATTAGTATTACCAGATAATATCGTACCAAGTAAATACGATT
TACATCTTANACCAAATTTAAAGGATTTTGTATTCANCGGCAAAGTTGACATTACAATCA
ATATTGTTAAACCAACCAAAAAAATCATTATCCATTCAATTGACATTGAAATTCAATCAG
TAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTACTATGAACCAGAANAAGTTGCAA
TTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAATACAATTCTCTCCATTGATTTCA
CTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAATATGTTGTCAATGGTG
AANATCGTTATATTGGTACCACTCAA----------TAAGAGATAAAAGTAAACACTAAA
TTGGGTATGTTGGGTGATGCTGATATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTC
AAAGCAGACTCTTCAAGTTTACCATCAGATATTCGTTCTACAGTACTTGCTACAATCGTA
AAGAATGGTGGTGAAGCTGATCAACAAATCATCATTGATCAATATCTTAAATCTTCTTTA
GTCGCTGAAAAGAATTCTTACCTTTTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTT
GAAAAAGCCCTCAATTTCGCTTTATCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTT
TTCTTTACCCTCCCAAATCGTGTTCGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTT
AATCAAATCAACGAAACATTTAAAAACTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGT
CTCACCTCTAAAATGGATGATTCTCAATACAATGAAGTCGTCAACTTTTTCAAAGATCAT
CCAGTTCCAATT
Length of connected seq. 962
Full length Seq ID -
Full length Seq. -
Length of full length seq. -